mRNA_9561 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A835YXR1_9STRA (BZIP domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR1_9STRA) HSP 1 Score: 552 bits (1423), Expect = 1.870e-194 Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 3
Query: 303 MDEYADAASAXXXXXXXAVAYAGQKRPAHSNADQALSEKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFPPRLQQDPASSSALMAAAGMGAKLKQDTLWNTLVRVLQITPQQEELLASKVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQVHEQPEEGITSETTVARGASXXXXXXXXXXXXXXXXXXXYARSVADSNSGSEET 1349
MDEYADAASAXXXXXXXAVAYAGQKRPAHSNADQALSEKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFPPRLQQDPASSSALMAAAGMGAKLKQDTLWNTLVRVLQITPQQEELLASKVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQVHEQPEEGITSETTVARGASXXXXXXXXXXXXXXXXXXXYARSVADSNSGSEET
Sbjct: 1 MDEYADAASAXXXXXXXAVAYAGQKRPAHSNADQALSEKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFPPRLQQDPASSSALMAAAGMGAKLKQDTLWNTLVRVLQITPQQEELLASKVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQVHEQPEEGITSETTVARGASXXXXXXXXXXXXXXXXXXXYARSVADSNSGSEET 349
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A3S7YS51_9STRA (Fructose-bisphosphatase n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A3S7YS51_9STRA) HSP 1 Score: 184 bits (467), Expect = 3.830e-47 Identity = 124/302 (41.06%), Postives = 172/302 (56.95%), Query Frame = 3
Query: 414 EKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFPPRLQQ-----------------DPASSSALM------------------AAAGMGAKLKQDTLWNTLVRVLQITP-QQEELLASKVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQVHEQPEEG 1211
EK+LRRLEKNR SARECRRRKKEHV LQ+Q+A LEA+NL+L+L+LK+G+E++ +E E + ++L +MV GA E DI +D+LK +++DYG DR SA FH ++L+ + L P +L + P S+ L+ A GA+ LW+ L LQ+TP QQ LL + ++ AMD DL T ++ LR+L+ KN SLD E+ ++Q+IL+PT TAKFILW++RN ACMHMLNQLW V+E+ E G
Sbjct: 497 EKKLRRLEKNRESARECRRRKKEHVVELQKQVALLEAENLKLKLQLKVGEESQAQER-QEKGRITKKLDDMVKTGASESDIWQTIDMLKERYSDYGSDRRSAIEFHTNQLE---KLLLPTKLTKLCMWMLFNMGDENGQTLSPVSAPTLLPSPSAHGKPENTSPPSSATATDAGAQAAARHLWSILSEELQVTPDQQASLLEHRGSVV-----------AMDADLDVTAGMLRDLRALIDDKNSSLDQELQEVQKILTPTQ---------TAKFILWITRNPACMHMLNQLWRAVYERSEGG 774
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A4D9D2R2_9STRA (BZIP domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2R2_9STRA) HSP 1 Score: 174 bits (442), Expect = 5.940e-46 Identity = 118/287 (41.11%), Postives = 165/287 (57.49%), Query Frame = 3
Query: 414 EKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFPPRLQQ------------DPASSSALMAAAGMGAKL--KQDT-------LWNTLVRVLQITPQQEELLASKVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQVHEQPEEG 1211
EK+LRRLEKNR SARECRRRKKEHV LQ+Q+A LEA+NL+L+L+LK+G+E++ +E E A + ++L EMV GA E DI +D+ K +++DYG DR SA FH ++L+ + L P +L + D + + G+ L +D LW L L +T +Q+ L + AMD D+ T ++ LR+L+ KN SLD E+ ++Q+ILSPT TAKFILW++RN ACMHMLNQLW V+E+ G
Sbjct: 132 EKKLRRLEKNRESARECRRRKKEHVVELQKQVAHLEAENLKLKLQLKVGEESQAQER-QEKARITKKLDEMVKTGASESDIWQTIDMFKERYSDYGSDRRSAIEFHTNQLE---KLLLPTKLTKVCMWMLLNMKGTDIVGGLNVTESKGLVGSLCNVEDAASEPARQLWAVLSEELHVTREQQAALLQR----------RDNIVAMDADIGVTSAMLRELRALIEDKNSSLDQELLEVQKILSPTQ---------TAKFILWITRNPACMHMLNQLWRAVYERSGGG 395
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A6H5L390_9PHAE (BZIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L390_9PHAE) HSP 1 Score: 155 bits (393), Expect = 2.440e-39 Identity = 127/348 (36.49%), Postives = 169/348 (48.56%), Query Frame = 3
Query: 375 KRPAHSNADQALSEKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDEL------------------QDDDRGL--------------FPPRLQQDP--------------ASSS---------------------------ALMAAAGMGAKLKQDT-LWNTLVRVLQITPQQEELLASKV-AIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQVH 1193
KRP S A A+ KRL+RLEKNR SAR + L+ QLA LE +NL LRL+L++GDEA + E + EI +K+ L + VS+G GEG IL MD+L +FADYG TSAA FHL +L Q G PP D ASSS A +AAAG+G +W +LV +L+ TP+Q+ ++ ++ AIA + DL T ++V LR LL +N++LD EMA IQRIL+PT +AKF+LWVS+N AC+HMLNQLW ++H
Sbjct: 59 KRPLGSTAADAMESKRLKRLEKNRESARXXXXXXXXXXEKLEAQLAALEEENLNLRLQLRVGDEAEDAE-NAEILEIKKGLHDQVSRGVGEGQILQTMDLLTERFADYGSAHTSAADFHLAQLSRLLLPTLTTRVCMHAVLQAGGSGAGAKTERVAGVVTPGVPPAASADGRSENAQGGFAGGFLASSSSGYAPGGDSLLASVPGDVGGGARQKTEAAVAAAGLGGAASAAVDMWTSLVVLLEATPEQQAVMHNQAGAIAD-----------LVRDLEGTEEIVERLRLLLADRNQTLDGEMAAIQRILTPTQ---------SAKFVLWVSKNKACVHMLNQLWDKLH 385
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A448ZQ51_9STRA (BZIP domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQ51_9STRA) HSP 1 Score: 142 bits (357), Expect = 4.480e-34 Identity = 109/297 (36.70%), Postives = 154/297 (51.85%), Query Frame = 3
Query: 408 LSEKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKG-AGEGDILAAMDVLKTKFADYGRDRTSAAIFHL-----------------DELQD-------DDRGLFPPR--LQQDPA----------SSSALMAAAGMGAKLKQDTLWNTLVRVLQITPQQEELLASKVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQ 1187
LSEK+LRRLEKNR+SARECRRRK+E + +Q Q+ LE++NL LRL+L++G+EA + +I K L E++ G A E +I A ++ K KFADYGRDR SA FHL + L+D +D PP+ PA S + A A L+ LVR L++TP Q L +A+ MD+ L TL ++ LR L + L+ E I++IL+P+ +AKF++WV+RN ACMHMLN+LW++
Sbjct: 111 LSEKKLRRLEKNRLSARECRRRKREATENMQGQINQLESENLRLRLQLQVGEEAEQTNHQKQIDSTKV-LDELLKSGKASESEIYAKIEEYKEKFADYGRDRRSAMEFHLRNVERLLMPTQTTSFIMNTLKDSSGEAVTEDTHXAPPQQVXNHSPAVPGPAPVSGSGSPSPEAPPAQAAPKTSKELFTLLVRKLEVTPAQAAALKDSRFVAEE----------MDQTLRETLTVLKDLRKRLAQCGQDLETEFHCIRQILTPSQ---------SAKFLVWVARNKACMHMLNELWSK 387
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A7S4IY02_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IY02_9STRA) HSP 1 Score: 138 bits (347), Expect = 4.040e-33 Identity = 109/320 (34.06%), Postives = 155/320 (48.44%), Query Frame = 3
Query: 408 LSEKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFPPR--------LQQDPASSSALM--------------------------------------AAAGMGAKLKQD--------TLWNTLVRVLQITPQQEELLASKVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQVHEQPE 1205
LSEK+LRRLEKNR+SARECRR+K+E Q L+R++ LEA+NL LRL+L+IG+EA E+ + E + L ++ GA E +I ++ K KFADYGRDR +A FHL + R L P L P SS + AAA + LK + L+ LV L++TP+Q L ++A+ +D L L + L L E L+ EM ++ IL+PT AKF++WV+ N ACMHMLN+LW++V+ +P+
Sbjct: 56 LSEKKLRRLEKNRLSARECRRKKREAAQNLEREINVLEAENLRLRLQLQIGEEA-EKSSCKEQEKITTGLDSLLKSGASESEIYGQIEEFKEKFADYGRDRRTAIEFHLRNVA---RLLMPTTTTSVAMRALHGGPISSVSRTSIPSASXXXXXXXXXXXXXXXXXXXXKASPVVISPSNSAAAQSDSSLKSEQHPPLEPKALFQYLVNYLEVTPEQASALKDSRSVAKE----------LDSSLQQALAVHDELSKRLTQVGEDLEAEMNSVRAILTPTQ---------AAKFLVWVANNGACMHMLNELWSKVYPKPD 352
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A7S1YBV2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YBV2_9STRA) HSP 1 Score: 135 bits (341), Expect = 3.440e-32 Identity = 108/322 (33.54%), Postives = 154/322 (47.83%), Query Frame = 3
Query: 405 ALSEKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFP----------------------PRLQQDPASSS------------ALMAAAGMG-------------------------AKLKQDTLWNTLVRVLQITPQQEELLASKVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQVH 1193
ALS+K+LRRL +NR SAR+CR+RK+E + LQR++A LE +NL LRL+L+IG EA E DE + L ++ GA E DI + ++ K KFADYGRDR SA FHL ++ R L P P+L + SS+ AL AA +G A L+ +L+ LV L+++P+Q L +A+ +D+ L + L+ LR E L+ E ++ IL+PT AKF++WV+ N ACMHMLN+LW + H
Sbjct: 37 ALSDKKLRRLARNRESARQCRKRKREETENLQREIAILEGENLRLRLQLQIGQEA-EDSLQDEQGRVTTELDALLKSGASEADIFSTIEAFKEKFADYGRDRRSAIAFHLQNVE---RLLMPTQTTSVVMNAIEGASTADAQAPPQLPWESPSSTDTNGSVAAIPAAALPPAATVGETTTPSEPTSGGIATVVSSDNLSKQANLEPKSLFKYLVTHLKVSPEQAMALRDSRLVAKE----------LDDCLAQSTTLLGELRQRCAQVGEDLETEFDHVRAILTPTQ---------AAKFLVWVANNQACMHMLNELWHRDH 335
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A7R9YDX1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDX1_9STRA) HSP 1 Score: 135 bits (341), Expect = 9.550e-32 Identity = 102/284 (35.92%), Postives = 149/284 (52.46%), Query Frame = 3
Query: 414 EKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFPPRLQQDPASSSALMAAAGM---GAKLKQD-----------TLWNTLVRVLQITPQQEELLASKVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQVHEQPEEGITSE 1223
EKR RRLEKNR SARECRRRKKE + LQ ++ +EA+NL+LRLKLK+G +A +E +D + Q + +M+ +GA E I+ M ++ KF+DYGRDR SA FHL EL R L P + A L + ++ K+ L N L R L+I+ Q E + ++E L + L+ L + + KN +LD+ M ++Q +L+PT AKF++WV+ N ACMHMLN +W Q+ Q + + +
Sbjct: 166 EKRQRRLEKNRESARECRRRKKEQLLKLQSEVTMIEAENLQLRLKLKVGRDAELKEEEDSTQ-VTQSVAKMLEEGASEQQIILMMKEMQEKFSDYGRDRISAIEFHLREL----RRLLLPTMTTKVAVWVLLQKREDLLCDPSRWKEQGEVPPPNASRLELINDLRRSLEISDAQVEEICKH----------RKDGLELEEILSESDVLLEKLGTHVSEKNATLDEAMNEVQSVLTPTQ---------AAKFVVWVANNPACMHMLNVIWNQMSSQESKMVAEQ 425
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A6G0WIW3_9STRA (BZIP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIW3_9STRA) HSP 1 Score: 133 bits (335), Expect = 4.390e-31 Identity = 96/271 (35.42%), Postives = 154/271 (56.83%), Query Frame = 3
Query: 381 PAHSNADQALSEKRLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFPPRLQQDPASSSALMAAAGMGAKLKQDTLWNTLVRVLQITPQQEELLAS-KVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQV 1190
P ++N + ++ R RRLE+NR SARECRRRK++H+ ++ + LE +N+ELR +LK G EA ++E D++ + Q L++M+ GA E D+ A +D K +++DYG+ R SA +HL +L+ R L P ++ + + A + +L + L L +T +Q + + S + A+ + E+L L+L+ L+ + KN +LD EM Q+Q IL+PT AKFI+WV+ N ACMH+LN+LWT V
Sbjct: 157 PTYNNDE--MNPLRKRRLERNRESARECRRRKRDHILGVEERCKLLEKENMELRSQLKAGKEAMKQEEDEKYQ-ICQELEKMIRDGASENDLAAKIDNFKEQYSDYGQARRSALSYHLHQLE---RLLMPTQVTKMCIWALKQDDAFWEDGAEDETSLLSILTHDLGLTEEQRKTIQSHRGAVVKIC-----------ENLRLALKLLNELKRDVEAKNITLDTEMDQLQNILTPTQR---------AKFIVWVTNNPACMHLLNKLWTNV 401
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Match: A0A485LPU7_9STRA (Aste57867_23826 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPU7_9STRA) HSP 1 Score: 130 bits (326), Expect = 9.280e-30 Identity = 95/259 (36.68%), Postives = 147/259 (56.76%), Query Frame = 3
Query: 420 RLRRLEKNRMSARECRRRKKEHVQALQRQLAGLEADNLELRLKLKIGDEAREREADDEIAGLKQRLQEMVSKGAGEGDILAAMDVLKTKFADYGRDRTSAAIFHLDELQDDDRGLFPPRLQQDPASSSALMAAAGMGAKLKQDT-LWNTLVRVLQITPQQEELLAS-KVAIAQXXXXXXXXXXAMDEDLHNTLQLVAGLRSLLCTKNESLDDEMAQIQRILSPTXXXXXXXXXXTAKFILWVSRNAACMHMLNQLWTQV 1190
R RRLE+NR SARECRRRK++H+ ++ + LE +N+ELR +LK G EA ++E D++ + L+ M+ GA EGD+ + +D K +++DYG+ R SA +HL +L+ R L P ++ + AL + +T L + L L +T +Q + + S + A+ + E+L L+L+ L+ + KN +LD EM Q+Q IL+PT AKFI+WV+ N ACMH+LN+LWT V
Sbjct: 180 RKRRLERNRESARECRRRKRDHILGVEERCKALERENMELRSQLKAGKEAMKQEEDEKYQ-ICHELESMIRDGATEGDLASKIDNFKEQYSDYGQARRSALSYHLHQLE---RLLMPTQVTK--MCIWALKQDDAFWEDGEDETSLLSILTHDLGLTEEQRKNIQSHRGAVVKIC-----------ENLRLALKLLNELKRDVEAKNITLDTEMDQLQNILTPTQR---------AKFIVWVTNNPACMHLLNKLWTNV 412 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348652 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9561 ID=mRNA_9561|Name=jgi.p|Trimin1|348652|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1388bp|location=Sequence derived from alignment at Contig_29:250706..260122- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCAAGACGGTCCGACGAGACAAAAGCGTACTGTTGCGGCAGCGATTAGCCback to top protein sequence of jgi.p|Trimin1|348652 >Trimin1|348652|estExt_Genemark1.C_Ctg_290035 ID=Trimin1|348652|estExt_Genemark1.C_Ctg_290035|Name=jgi.p|Trimin1|348652|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=350bp MDEYADAASAAAAAAAGAVAYAGQKRPAHSNADQALSEKRLRRLEKNRMSback to top mRNA from alignment at Contig_29:250706..260122- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9561 ID=mRNA_9561|Name=jgi.p|Trimin1|348652|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9417bp|location=Sequence derived from alignment at Contig_29:250706..260122- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_29:250706..260122- >mRNA_9561 ID=mRNA_9561|Name=jgi.p|Trimin1|348652|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1050bp|location=Sequence derived from alignment at Contig_29:250706..260122- (Tribonema minus UTEX_B_3156 )back to top |