mRNA_9554 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A836CED5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED5_9STRA) HSP 1 Score: 116 bits (290), Expect = 5.210e-33 Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query: 1 MPCNADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTGMTSSA 156
MPCNADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTGMTSSA
Sbjct: 1 MPCNADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTGMTSSA 52
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A835YYD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYD2_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 3.730e-14 Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 13 ADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTG 141
AD++G + FAS+GPAGIEKFWTIINGYFNELLSYI GTG
Sbjct: 1 ADVSGFTACMERFASHGPAGIEKFWTIINGYFNELLSYIRGTG 43
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A835ZDK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK8_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.030e-7 Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 1
Query: 40 LHGFASNGPAGIEKFWTIINGYFNELLSYICGTG 141
+ FASN PAGIEKF TIINGY NELLSYI GTG
Sbjct: 1 MERFASNRPAGIEKFRTIINGYLNELLSYIRGTG 34
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A835Z1K3_9STRA (SAYSvFN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K3_9STRA) HSP 1 Score: 488 bits (1256), Expect = 4.160e-172 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1
Query: 1 MPTPSSWWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRGGXXXXXXXXXXXXXXGDEDGFVMVDMPGQRRGEGESLERSASRGAFVAGRAETRNPCAPCRLACCGAPQRLQAALARRLFGIKAALRVRRSDANGARPRRRGKKARRNYEQRRQLRADAEVAAALGDELSDED 828
MPTPSSWWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRGGXXXXXXXXXXXXXXGDEDGFVMVDMPGQRRGEGESLERSASRGAFVAGRAETRNPCAPCRLACCGAPQRLQAALARRLFGIKAALRVRRSDANGARPRRRGKKARRNYEQRRQLRADAEVAAALGDELSDED
Sbjct: 1 MPTPSSWWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRGGXXXXXXXXXXXXXXGDEDGFVMVDMPGQRRGEGESLERSASRGAFVAGRAETRNPCAPCRLACCGAPQRLQAALARRLFGIKAALRVRRSDANGARPRRRGKKARRNYEQRRQLRADAEVAAALGDELSDED 276
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A6H5L1U7_9PHAE (SAYSvFN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U7_9PHAE) HSP 1 Score: 116 bits (291), Expect = 6.980e-27 Identity = 66/135 (48.89%), Postives = 87/135 (64.44%), Query Frame = 1
Query: 19 WWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDV 423
WW +VKA+AFEL+PF +P DV A + + +N L L A V+ S L L AWL W L EFG V+ I+S++A +F+NLGE GE E+SAYSVFNAGCRA+LGT++A+Q ERE+M Q+V
Sbjct: 16 WWSLVKAIAFELKPFSLPGVEDVKAAAVAVRTNVRQLTDELVRVTPEALGAVKAVNPSRALGLMAWLCGWALFIWLEFGAVYFIISSMAMIFMNLGERGE-SEWSAYSVFNAGCRALLGTINAEQFEREIMRQNV 149
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: D7FWA2_ECTSI (SAYSvFN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA2_ECTSI) HSP 1 Score: 114 bits (284), Expect = 5.930e-26 Identity = 64/135 (47.41%), Postives = 87/135 (64.44%), Query Frame = 1
Query: 19 WWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDV 423
WW VVKA+AFEL+PF +P+ DV A + + +N + + A V+ L L AWL W L EFG V+ I+S++A +F+NLGE GE E+SAYSVFNAGCRA+LGT++A+Q ERE+M Q+V
Sbjct: 16 WWSVVKAIAFELKPFSLPSVEDVKAAAVAVRTNVRQVVDELVRVTPEAVGAVKAVNPLRALGLLAWLCGWALFIWLEFGAVYFIISSMAMIFMNLGERGE-SEWSAYSVFNAGCRALLGTINAEQFEREIMRQNV 149
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI0012D47383 (uncharacterized protein LOC116347611 n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D47383) HSP 1 Score: 68.9 bits (167), Expect = 2.760e-10 Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 214 WLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGER-GEFSAYSVFNAGCRAILGTLDAQQLERELMH 414
W W + +FG+V+L+ SA+ ++ N E +R GE SAYSVFNA C +I GTL A+QLERE+++
Sbjct: 102 WATCWMIAIELKFGIVYLLFSALFGIYFNTRTEPKRKGEISAYSVFNANCESIKGTLKAEQLEREMIY 169
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A8I6RNH3_CIMLE (SAYSvFN domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RNH3_CIMLE) HSP 1 Score: 66.6 bits (161), Expect = 2.220e-9 Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 199 LRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGE-EGERGEFSAYSVFNAGCRAILGTLDAQQLERELM 411
LRL W ++L + EFG VFL +SA+ ++ N + +RGE SAYS+FN C+ I GTL A+QL+RE++
Sbjct: 89 LRLSLWGSLYYLAIKVEFGTVFLAISALIFIYYNTRTGQKKRGEVSAYSIFNKNCQPIDGTLQAEQLQREML 160
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI0010F69E25 (SAYSvFN domain-containing protein 1 n=2 Tax=Osmia TaxID=124287 RepID=UPI0010F69E25) HSP 1 Score: 64.7 bits (156), Expect = 7.070e-9 Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 172 STLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGER-GEFSAYSVFNAGCRAILGTLDAQQLERELMH 414
S L +V+ L W + + EFG V+ +LS + +++N G + ++ GE SAYSVFN C+AI GTLDA Q ERE+ +
Sbjct: 80 SVLTTVTYLLYFLLWATLYIIAIEFEFGAVYFVLSTLVFIWLNTGSKPKKPGELSAYSVFNPDCKAIEGTLDASQFEREIRY 161
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI0008F9BB31 (uncharacterized protein LOC109042707 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BB31) HSP 1 Score: 64.7 bits (156), Expect = 7.210e-9 Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 214 WLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGER-GEFSAYSVFNAGCRAILGTLDAQQLERELMH 414
W + L AEFG VF+ILS ++ N ++ GE SAYSVFN C AI G+LDA+QLERE+++
Sbjct: 98 WCSLFGLAVFAEFGAVFVILSGFVIIWANTRTSPKKPGEISAYSVFNPNCEAIQGSLDAKQLEREMLY 165
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A091QL28_9GRUI (SAYSvFN domain-containing protein 1 (Fragment) n=1 Tax=Mesitornis unicolor TaxID=54374 RepID=A0A091QL28_9GRUI) HSP 1 Score: 62.0 bits (149), Expect = 1.090e-8 Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 232 LCARAEFGVVFLILSAIAAMFVNLG--EEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRGG 432
L A E G+ + +LS + M+ E +RGE SAYSVFN GC I GTL A+QLEREL+++ GG
Sbjct: 21 LFAELELGLPYFVLSLLYWMYAGTRGPAERQRGELSAYSVFNPGCGPIPGTLTAEQLERELLYRPAAGG 89
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI00071980C3 (SAYSvFN domain-containing protein 1 n=2 Tax=Laurasiatheria TaxID=314145 RepID=UPI00071980C3) HSP 1 Score: 63.9 bits (154), Expect = 2.300e-8 Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 199 LRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLG--EEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRG 429
L++ WL L EFG+ + +LS M+V EE + GE SAYSVFN GC+AI GTL A+Q EREL + + G
Sbjct: 119 LKVLLWLVLLGLFVELEFGLAYFVLSLFYWMYVGTRGPEEKKEGEKSAYSVFNPGCKAIQGTLTAEQFERELQFRPLEG 197
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI0009A3E511 (SAYSvFN domain-containing protein 1 n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A3E511) HSP 1 Score: 61.6 bits (148), Expect = 3.060e-8 Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 214 WLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGE--RGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRG 429
WL L EFG+ F +LS ++V + + RGE SAYSVFN GC+AI G+L A+Q EREL ++ + G
Sbjct: 45 WLVLLGLFIELEFGLAFFVLSMFYWIYVGTRDPSKKKRGEVSAYSVFNPGCKAIEGSLTAEQFERELQYRPLAG 118 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9554 ID=mRNA_9554|Name=jgi.p|Trimin1|348649|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=197bp|location=Sequence derived from alignment at Contig_29:150098..151126- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCGTGCAATGCAGATCTGGCTGGCTGTCGTGAGCGGCTTCATGGCTTback to top protein sequence of jgi.p|Trimin1|348649 >Trimin1|348649|estExt_Genemark1.C_Ctg_290024 ID=Trimin1|348649|estExt_Genemark1.C_Ctg_290024|Name=jgi.p|Trimin1|348649|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=53bp MPCNADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTGMTSback to top mRNA from alignment at Contig_29:150098..151126- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9554 ID=mRNA_9554|Name=jgi.p|Trimin1|348649|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_29:150098..151126- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_29:150098..151126- >mRNA_9554 ID=mRNA_9554|Name=jgi.p|Trimin1|348649|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=159bp|location=Sequence derived from alignment at Contig_29:150098..151126- (Tribonema minus UTEX_B_3156 )back to top |