mRNA_9554 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348649
Unique NamemRNA_9554
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A836CED5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.210e-33
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query:    1 MPCNADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTGMTSSA 156
            MPCNADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTGMTSSA
Sbjct:    1 MPCNADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTGMTSSA 52          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A835YYD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYD2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.730e-14
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   13 ADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTG 141
            AD++G    +  FAS+GPAGIEKFWTIINGYFNELLSYI GTG
Sbjct:    1 ADVSGFTACMERFASHGPAGIEKFWTIINGYFNELLSYIRGTG 43          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A835ZDK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.030e-7
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   40 LHGFASNGPAGIEKFWTIINGYFNELLSYICGTG 141
            +  FASN PAGIEKF TIINGY NELLSYI GTG
Sbjct:    1 MERFASNRPAGIEKFRTIINGYLNELLSYIRGTG 34          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A835Z1K3_9STRA (SAYSvFN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K3_9STRA)

HSP 1 Score: 488 bits (1256), Expect = 4.160e-172
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1
Query:    1 MPTPSSWWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRGGXXXXXXXXXXXXXXGDEDGFVMVDMPGQRRGEGESLERSASRGAFVAGRAETRNPCAPCRLACCGAPQRLQAALARRLFGIKAALRVRRSDANGARPRRRGKKARRNYEQRRQLRADAEVAAALGDELSDED 828
            MPTPSSWWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRGGXXXXXXXXXXXXXXGDEDGFVMVDMPGQRRGEGESLERSASRGAFVAGRAETRNPCAPCRLACCGAPQRLQAALARRLFGIKAALRVRRSDANGARPRRRGKKARRNYEQRRQLRADAEVAAALGDELSDED
Sbjct:    1 MPTPSSWWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRGGXXXXXXXXXXXXXXGDEDGFVMVDMPGQRRGEGESLERSASRGAFVAGRAETRNPCAPCRLACCGAPQRLQAALARRLFGIKAALRVRRSDANGARPRRRGKKARRNYEQRRQLRADAEVAAALGDELSDED 276          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A6H5L1U7_9PHAE (SAYSvFN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U7_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 6.980e-27
Identity = 66/135 (48.89%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   19 WWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDV 423
            WW +VKA+AFEL+PF +P   DV A + +  +N   L           L A   V+ S  L L AWL  W L    EFG V+ I+S++A +F+NLGE GE  E+SAYSVFNAGCRA+LGT++A+Q ERE+M Q+V
Sbjct:   16 WWSLVKAIAFELKPFSLPGVEDVKAAAVAVRTNVRQLTDELVRVTPEALGAVKAVNPSRALGLMAWLCGWALFIWLEFGAVYFIISSMAMIFMNLGERGE-SEWSAYSVFNAGCRALLGTINAEQFEREIMRQNV 149          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: D7FWA2_ECTSI (SAYSvFN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA2_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.930e-26
Identity = 64/135 (47.41%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   19 WWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDV 423
            WW VVKA+AFEL+PF +P+  DV A + +  +N   +           + A   V+    L L AWL  W L    EFG V+ I+S++A +F+NLGE GE  E+SAYSVFNAGCRA+LGT++A+Q ERE+M Q+V
Sbjct:   16 WWSVVKAIAFELKPFSLPSVEDVKAAAVAVRTNVRQVVDELVRVTPEAVGAVKAVNPLRALGLLAWLCGWALFIWLEFGAVYFIISSMAMIFMNLGERGE-SEWSAYSVFNAGCRALLGTINAEQFEREIMRQNV 149          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI0012D47383 (uncharacterized protein LOC116347611 n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D47383)

HSP 1 Score: 68.9 bits (167), Expect = 2.760e-10
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  214 WLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGER-GEFSAYSVFNAGCRAILGTLDAQQLERELMH 414
            W   W +    +FG+V+L+ SA+  ++ N   E +R GE SAYSVFNA C +I GTL A+QLERE+++
Sbjct:  102 WATCWMIAIELKFGIVYLLFSALFGIYFNTRTEPKRKGEISAYSVFNANCESIKGTLKAEQLEREMIY 169          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A8I6RNH3_CIMLE (SAYSvFN domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RNH3_CIMLE)

HSP 1 Score: 66.6 bits (161), Expect = 2.220e-9
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  199 LRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGE-EGERGEFSAYSVFNAGCRAILGTLDAQQLERELM 411
            LRL  W   ++L  + EFG VFL +SA+  ++ N    + +RGE SAYS+FN  C+ I GTL A+QL+RE++
Sbjct:   89 LRLSLWGSLYYLAIKVEFGTVFLAISALIFIYYNTRTGQKKRGEVSAYSIFNKNCQPIDGTLQAEQLQREML 160          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI0010F69E25 (SAYSvFN domain-containing protein 1 n=2 Tax=Osmia TaxID=124287 RepID=UPI0010F69E25)

HSP 1 Score: 64.7 bits (156), Expect = 7.070e-9
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  172 STLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGER-GEFSAYSVFNAGCRAILGTLDAQQLERELMH 414
            S L +V+  L    W   + +    EFG V+ +LS +  +++N G + ++ GE SAYSVFN  C+AI GTLDA Q ERE+ +
Sbjct:   80 SVLTTVTYLLYFLLWATLYIIAIEFEFGAVYFVLSTLVFIWLNTGSKPKKPGELSAYSVFNPDCKAIEGTLDASQFEREIRY 161          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI0008F9BB31 (uncharacterized protein LOC109042707 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BB31)

HSP 1 Score: 64.7 bits (156), Expect = 7.210e-9
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  214 WLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGER-GEFSAYSVFNAGCRAILGTLDAQQLERELMH 414
            W   + L   AEFG VF+ILS    ++ N     ++ GE SAYSVFN  C AI G+LDA+QLERE+++
Sbjct:   98 WCSLFGLAVFAEFGAVFVILSGFVIIWANTRTSPKKPGEISAYSVFNPNCEAIQGSLDAKQLEREMLY 165          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: A0A091QL28_9GRUI (SAYSvFN domain-containing protein 1 (Fragment) n=1 Tax=Mesitornis unicolor TaxID=54374 RepID=A0A091QL28_9GRUI)

HSP 1 Score: 62.0 bits (149), Expect = 1.090e-8
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  232 LCARAEFGVVFLILSAIAAMFVNLG--EEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRGG 432
            L A  E G+ + +LS +  M+       E +RGE SAYSVFN GC  I GTL A+QLEREL+++   GG
Sbjct:   21 LFAELELGLPYFVLSLLYWMYAGTRGPAERQRGELSAYSVFNPGCGPIPGTLTAEQLERELLYRPAAGG 89          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI00071980C3 (SAYSvFN domain-containing protein 1 n=2 Tax=Laurasiatheria TaxID=314145 RepID=UPI00071980C3)

HSP 1 Score: 63.9 bits (154), Expect = 2.300e-8
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  199 LRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLG--EEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRG 429
            L++  WL    L    EFG+ + +LS    M+V     EE + GE SAYSVFN GC+AI GTL A+Q EREL  + + G
Sbjct:  119 LKVLLWLVLLGLFVELEFGLAYFVLSLFYWMYVGTRGPEEKKEGEKSAYSVFNPGCKAIQGTLTAEQFERELQFRPLEG 197          
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Match: UPI0009A3E511 (SAYSvFN domain-containing protein 1 n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A3E511)

HSP 1 Score: 61.6 bits (148), Expect = 3.060e-8
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  214 WLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGE--RGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDVRG 429
            WL    L    EFG+ F +LS    ++V   +  +  RGE SAYSVFN GC+AI G+L A+Q EREL ++ + G
Sbjct:   45 WLVLLGLFIELEFGLAFFVLSMFYWIYVGTRDPSKKKRGEVSAYSVFNPGCKAIEGSLTAEQFERELQYRPLAG 118          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348649 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CED5_9STRA5.210e-33100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYD2_9STRA3.730e-1474.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZDK8_9STRA1.030e-779.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|348649 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1K3_9STRA4.160e-172100.00SAYSvFN domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5L1U7_9PHAE6.980e-2748.89SAYSvFN domain-containing protein n=1 Tax=Ectocarp... [more]
D7FWA2_ECTSI5.930e-2647.41SAYSvFN domain-containing protein n=1 Tax=Ectocarp... [more]
UPI0012D473832.760e-1047.06uncharacterized protein LOC116347611 n=1 Tax=Conta... [more]
A0A8I6RNH3_CIMLE2.220e-945.83SAYSvFN domain-containing protein n=1 Tax=Cimex le... [more]
UPI0010F69E257.070e-941.46SAYSvFN domain-containing protein 1 n=2 Tax=Osmia ... [more]
UPI0008F9BB317.210e-948.53uncharacterized protein LOC109042707 n=1 Tax=Bemis... [more]
A0A091QL28_9GRUI1.090e-847.83SAYSvFN domain-containing protein 1 (Fragment) n=1... [more]
UPI00071980C32.300e-845.57SAYSvFN domain-containing protein 1 n=2 Tax=Lauras... [more]
UPI0009A3E5113.060e-844.59SAYSvFN domain-containing protein 1 n=1 Tax=Rhinco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:150098..151126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348649|estExt_Genemark1.C_Ctg_290024
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId348971
TrackFilteredModels1
ProteinId348649
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348649gene_9554Tribonema minus UTEX_B_3156 geneContig_29 150098..151126 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9554_2exon_9554_2Tribonema minus UTEX_B_3156 exonContig_29 150098..150265 -
exon_9554_1exon_9554_1Tribonema minus UTEX_B_3156 exonContig_29 151098..151126 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9554UTR3_9554Tribonema minus UTEX_B_3156 three_prime_UTRContig_29 150098..150135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9554CDS_9554Tribonema minus UTEX_B_3156 CDSContig_29 151098..151126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348649Trimin1|348649|estExt_Genemark1.C_Ctg_290024Tribonema minus UTEX_B_3156 polypeptideContig_29 150136..151126 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9554 ID=mRNA_9554|Name=jgi.p|Trimin1|348649|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=197bp|location=Sequence derived from alignment at Contig_29:150098..151126- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTGCAATGCAGATCTGGCTGGCTGTCGTGAGCGGCTTCATGGCTT
CGCGTCCAACGGGCCCGCGGGCATCGAGAAGTTCTGGACGATCATCAACG
GCTACTTCAACGAGCTGCTGTCGTACATCTGCGGCACGGGCATGACGTCA
AGTGCTTAGGGGGCGATGCGCTCATGGTCGTGTACGATGCCGAGCGG
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protein sequence of jgi.p|Trimin1|348649

>Trimin1|348649|estExt_Genemark1.C_Ctg_290024 ID=Trimin1|348649|estExt_Genemark1.C_Ctg_290024|Name=jgi.p|Trimin1|348649|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=53bp
MPCNADLAGCRERLHGFASNGPAGIEKFWTIINGYFNELLSYICGTGMTS
SA*
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mRNA from alignment at Contig_29:150098..151126-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9554 ID=mRNA_9554|Name=jgi.p|Trimin1|348649|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_29:150098..151126- (Tribonema minus UTEX_B_3156 )
ATGCCGTGCAATGCAGATCTGGCTGGCTGGTGGGTTTGTACAGTTACTGT GACCGGGTATTACCATAATCATCTGATGCGTCTGTGTATGGCAAACATAC TATCATGGGCAGTAGATAAAGCAGGACTTGAACGTACGCGTAGTGCAGCA CCGGGCATTCTGTCAGTGAGAGTCTACGGGGCACCAGCTGGACTGTTGCG TTATCTCAACAGTGGAAATCGAACACTAAAATTATCCGTCAAGACTCTGT CAAACTATTGTGTACTAGTACCTGTAGTTGGTTGCTGTATCACTTATCAT TCAATGAAGTACTAAATCAAATACAATCCACCAACACTTCATTCTGTAAC ACACCAGCTTTAACATCAGAGCAGGATTGACCGGAGGTTATGGGCCGGCA CTGATCACGTCAGCTTCGTTCGCAGGCCCATAGGCTTTGCCTACAAGTAT TATTGTTATGGTGCGCTTTCAGGTGCGGCACTGTTTTGGTTGTGACCAAA ACTCTGTTGTGCAAGCTCATGTAGTGTCTCTGTAAGTGTTCTTTCTTCGT ATGTTGAATCCGCTAGCATATATGCATTCAAATCACCAGTTCACAAACAT CCGGCAATGTTTGTGCATCTACATGCAACACGTTTTGTGAAGAAATGGTA CCAATACCCCGATGATTTTGCAGGCAGCGCATACGACACAGGCGCACATG ACGCTGCAACTAATGTGCGCTGAATAGCACCTGCATGCCAGCGCACGGTG GTAAGCTTACCAGAAGCGCACCAGTTCCTTAATAATTGATGGCTTCTTGA AGTAGACGGCTGCGGTCATCTTCAACATCTGAGCGCTGCCGCCGCTGCCG TTGCCGCGCAGTCGTGAGCGGCTTCATGGCTTCGCGTCCAACGGGCCCGC GGGCATCGAGAAGTTCTGGACGATCATCAACGGCTACTTCAACGAGCTGC TGTCGTACATCTGCGGCACGGGCATGACGTCAAGTGCTTAGGGGGCGATG CGCTCATGGTCGTGTACGATGCCGAGCGG
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Coding sequence (CDS) from alignment at Contig_29:150098..151126-

>mRNA_9554 ID=mRNA_9554|Name=jgi.p|Trimin1|348649|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=159bp|location=Sequence derived from alignment at Contig_29:150098..151126- (Tribonema minus UTEX_B_3156 )
ATGCCGTGCAATGCAGATCTGGCTGGCTGTCGTGAGCGGCTTCATGGCTT
CGCGTCCAACGGGCCCGCGGGCATCGAGAAGTTCTGGACGATCATCAACG
GCTACTTCAACGAGCTGCTGTCGTACATCTGCGGCACGGGCATGACGTCA
AGTGCTTAG
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