mRNA_9552 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134721
Unique NamemRNA_9552
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: A0A835YXT1_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT1_9STRA)

HSP 1 Score: 470 bits (1210), Expect = 3.370e-167
Identity = 234/248 (94.35%), Postives = 238/248 (95.97%), Query Frame = 1 
Query:    1 CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPI-KVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            CTRWAVVTTIFAPT ATKAVDQWGPNW LLVIADKAGPDAAEYPLE GIYVSVEVQQSLAKASP IAALPWNHFG KNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPL+WVL+SESGI+PAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIE     KVAVLQALAGHDPDVDAIYRLT+PLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV
Sbjct:    2 CTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 249
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BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: A0A818LZ82_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818LZ82_9BILA)

HSP 1 Score: 189 bits (480), Expect = 1.250e-54
Identity = 102/247 (41.30%), Postives = 144/247 (58.30%), Query Frame = 1 
Query:    1 CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C  W VVTTIF P+ A +   +    WC++V+ADK    +  Y + + +Y+SVE Q+ L     F+  +PWNHFGRKN+GYL A L GA+ ++D DDDNVL  +  + P S +  + S               FN YP+MGA++ P WPRGFPL+ IK E      C  +    EV   +V + Q+LA +DPDVDAIYR+T PLPL+F       + +      PYNAQA++H++   + +LLP+TV
Sbjct:   39 CDSWVVVTTIFPPSEAVQKAARLD-GWCVVVVADKKS--SPSYYVSNIVYLSVEAQKKLVNHYKFVQLIPWNHFGRKNIGYLYAILQGAQYIFDLDDDNVLKQSHISPPKSVIEMTVSNCT-----------VFNVYPTMGASKHPSWPRGFPLEKIKQE------CYWTQERREVHKDEVVIFQSLADNDPDVDAIYRMTLPLPLHFKSHTS--VGIPPGVFVPYNAQASMHYRKSFWGLLLPITV 263
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BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: A0A812JXG3_SYMPI (STL1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812JXG3_SYMPI)

HSP 1 Score: 182 bits (461), Expect = 1.050e-52
Identity = 106/256 (41.41%), Postives = 150/256 (58.59%), Query Frame = 1 
Query:    4 TRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPL--EHGIY-VSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIV-----PAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEP--EKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            TRWAV+TTI  PTPA + + +    WC+ VI+D  GP   + P    HG++ ++  +Q+ LA  S F++++PWNHFGRKN+GYL+A   GA+V+WDFDDDN++ A        +    +SGI+     P      G G   N Y ++G    PCWPRGFPL   +S A +      S+  +     +VAVLQ+LA  DPDVDAI+RLT P      F+P  +++L +   T  P NAQA LH +   + +LLP+TV
Sbjct:   33 TRWAVLTTINGPTPAVQQLAE-ADGWCIAVISDLKGPARYDLPRASSHGLFFLNASLQKKLAADSTFVSSIPWNHFGRKNLGYLVAIARGAQVIWDFDDDNLVTAGDFP---DFPRGLDSGILQVLWTPGPGAHLGSGGVLNIYSALGCPVWPCWPRGFPLSLARSRAPNRSEWLQSS-ELSKPSKRVAVLQSLADKDPDVDAIFRLTSPSATEIYFQPPGKEVLALPAFTFCPANAQAALHRRDAFWGLLLPMTV 283
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BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: A0A0G4IGI5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IGI5_PLABS)

HSP 1 Score: 186 bits (472), Expect = 1.280e-52
Identity = 108/254 (42.52%), Postives = 147/254 (57.87%), Query Frame = 1 
Query:    1 CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHG---IYVSVEVQQSLAKASP-FIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKI---LLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C +W+VVTTIF P+ A K     GP+WC++++ D+  P    Y +E     +Y+    Q++  K  P F + L WNHFGRKNVG+L A  HGA+ +WDFDDDN+L   K    +    + E   V   +    P   +NPY  MGA  SP WPRG PL  IK   + +     S     V+   VA++Q+LA HDPD+DAIYRLT PLP  FNF+P      +++  +TL+P NAQA L  +A  + +LLPVTV
Sbjct:  117 CKQWSVVTTIFEPSDAVKKQANLGPDWCIVIVGDRKSPPV--YHVEGSSTIVYLDANDQETFGKEFPEFFSTLNWNHFGRKNVGFLYAIAHGAQAIWDFDDDNIL---KDHADIKVPGEDEDYSVDLPKDHDFP--TYNPYVKMGAPHSPSWPRGIPLTHIKDSGSWK----SSLQRARVKGRDVALIQSLADHDPDMDAIYRLTMPLP--FNFQPPSDAAPIVLPPKTLAPLNAQACLFRRAAFWMLLLPVTV 357
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BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: A0A8B7XWL1_ACAPL (probable glycosyltransferase STELLO2 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XWL1_ACAPL)

HSP 1 Score: 180 bits (457), Expect = 9.560e-51
Identity = 111/247 (44.94%), Postives = 140/247 (56.68%), Query Frame = 1 
Query:    1 CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C RW VVTTI+ PTP    +      WC++V+ADK GP +   P  +  Y+ V  Q+S          +PWNHFGRKN+GYL A  HGA++++D DDDN         PL   + +    V  AR     GA +NPYP+ G      WPRGFPL  IK ++        +A S +  P +V V+Q LA HDPDVDAIYRLT  LP  FN  P + L+V +R  SPYNAQATLH     + MLLPVTV
Sbjct:   96 CDRWIVVTTIYKPTPILPKISSLK-GWCMVVVADKKGPQSMNIP--NVDYLDVVQQESCGYK--LCRVVPWNHFGRKNIGYLYAIEHGAKLIYDTDDDNA--------PLFPEVPAFDN-VGYARYVTAGGAVWNPYPTFGQNTK-VWPRGFPLSRIKDQSTKI-----AAESGKALPQQVGVVQFLAQHDPDVDAIYRLTSELPFDFNPTPRR-LVVPKRMFSPYNAQATLHAHDAFWGMLLPVTV 321
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BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: UPI0014582C46 (probable glycosyltransferase STELLO2 isoform X2 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014582C46)

HSP 1 Score: 177 bits (449), Expect = 3.280e-49
Identity = 106/264 (40.15%), Postives = 147/264 (55.68%), Query Frame = 1 
Query:    1 CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHGI----------YVSVEVQQSLAKASPFIA-ALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNV----LNAAKAAGPLSWVLDSESGIVPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPE--KILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C  WAVVTT+F+P+ A + +     NWCL+++AD   P  ++Y  E G           Y+SV  Q   +K  P +A A+P N FGRKN+GY+ A  H A  +WDFDDDN     LN  K + PLS+V D ++                NPYP  G  ES  WPRGFPLQDIK++      C  S +      +K+ ++Q+LA   PD+DAIYRLTR +P  F   P+  + L++ R + +P+NAQATL F      +LLP++V
Sbjct:  130 CDNWAVVTTVFSPSKAVQHIASLT-NWCLVIVADMKTPPESKYLFEMGNVNHITRKRVKYLSVPEQ---SKLYPLLAEAIPLNTFGRKNIGYMYAIHHEANYIWDFDDDNFGLIELNDFKPSNPLSYVTDCKA----------AHNTLLNPYPYFGVAESYTWPRGFPLQDIKNKTTLPKLCTKSTS------VKLGIVQSLANKQPDIDAIYRLTRDIPFNFRATPKSHRPLVLPRNSYTPFNAQATLWFAPAFPYLLLPISV 373
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BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: D7FLI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLI5_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 4.060e-47
Identity = 118/267 (44.19%), Postives = 151/267 (56.55%), Query Frame = 1 
Query:    1 CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVPAARK--CRGPGA-AFNPYPSMGATESPCWPRGFPLQDIK---SEAASELA---CGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRP---LPLYFNFE-----PE---KILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C RWAV+T+IF PT   + +     +WC++V+ D+ GP  AEY +E  IY++ + Q+ L      +  LPWNHFGRKN+GYL A  HGA V++D DDDN L       P + V  + S + PA+      GP A   NPY   G   +  WPRGFPL  I    S    E+A    G SAA  E    ++ V+QALA HDPDVDA+YRLT P   LP  F+FE     PE    + +V     +PYNAQATLHF    + MLLPVTV
Sbjct:   28 CERWAVLTSIFEPTDTVRQLGA-AEDWCVVVVGDQNGP--AEYNVEGVIYLTPQDQEQLPYR--IVPLLPWNHFGRKNIGYLYAVHHGATVIYDVDDDNAL-----IHPEAGVPHALSPVTPASTTSFAVGPEAFVHNPYGCFGGPGN-VWPRGFPLDSINDADSNRCDEVAVDSAGESAAPEE--GWRLGVVQALANHDPDVDAVYRLTYPPGGLP--FDFEVPDPVPEGMSSLKIVPPAAFTPYNAQATLHFPPAFWGMLLPVTV 279
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BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: A0A0H5RCI1_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RCI1_9EUKA)

HSP 1 Score: 173 bits (439), Expect = 5.460e-46
Identity = 101/252 (40.08%), Postives = 139/252 (55.16%), Query Frame = 1 
Query:    1 CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHG---IYVSVEVQQSLAKASP-FIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEK-ILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C  W+VVTTIF P+ + +     GP+WC++V+ D+  P    YPL      +Y+ V  Q+S A   P FI AL WNHFGRKNVG+L A   GA+ +WDFDDDN+L        +  +   +  IV      +     +NPY   GA   P WPRG PL  IK   +       S    +VR   + ++Q+LA HDPD+DAIYRL +PLP  F       I+++   TL+P NAQA L  ++  + +LLP+TV
Sbjct:  125 CKYWSVVTTIFDPSDSVRRQANLGPDWCIVVVGDRKSPPV--YPLTGSSQLVYLDVPAQESYALRFPEFINALSWNHFGRKNVGFLYAIEQGAKSIWDFDDDNLLKDG-----IDIINPDDEVIVEVDVPEQDGFPTYNPYIHFGAPHFPSWPRGIPLTHIKEPGSYNATMTRS----KVRGADIGLIQSLADHDPDMDAIYRLVQPLPFTFQTSSSAPIVVLPPNTLAPLNAQACLFKRSAFWMLLLPITV 365
[Close]
BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: UPI0018D8F1E1 (probable glycosyltransferase STELLO1 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8F1E1)

HSP 1 Score: 168 bits (425), Expect = 7.780e-46
Identity = 105/247 (42.51%), Postives = 135/247 (54.66%), Query Frame = 1 
Query:    1 CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C RW VVTTI   TP  + +      WC++V+ADK GP   + P  +  Y+ V  Q+S          LPWNHFGRKN+GYL A  HGAE+++D DDDN         PL   L +    V  +++    G  +NPYP  GA     WPRGFPL  I   A   +    + +S  V   +  V+Q LA HDPD+DAIYRLT  LP  F+  P + L V  R +SPYNAQATLH     + +LLPV+V
Sbjct:   98 CGRWIVVTTIHPSTPILRKISSLS-GWCMVVVADKKGPVTMDIP--NVDYLDVVQQESCGYQ--ICRLLPWNHFGRKNIGYLYAIEHGAEMIYDTDDDNQ--------PLFDELPAFDN-VGYSKQLHVAGHLWNPYPQFGANTK-MWPRGFPLSRIMDPATKRV----NVSSGTVAARRAGVVQFLAQHDPDIDAIYRLTNELPYEFDPAPRR-LFVPERVMSPYNAQATLHAHQAFWGLLLPVSV 324
[Close]
BLAST of jgi.p|Trimin1|134721 vs. uniprot
Match: A0A1S3JBQ2_LINUN (probable glycosyltransferase STELLO2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JBQ2_LINUN)

HSP 1 Score: 167 bits (423), Expect = 1.100e-45
Identity = 99/247 (40.08%), Postives = 141/247 (57.09%), Query Frame = 1 
Query:    1 CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C +W V+TTIF P+   K + +   +WC++V+ADK GP+  +Y + +  Y+SV  Q+S          L WNHFGRKN+GY+ A  HGAE ++D DDDNVL  AK   P           +   +     G  +NPYP M       WPRGFPL+ IKS+ A        + + E+   K+ ++Q+LA ++PDVDAIYR T+PLP  F+ + E  + V +  ++PYNAQAT+      F+  LPVTV
Sbjct:  102 CKKWVVITTIFEPSELVKQLSEIT-SWCVVVVADKKGPE--KYVVPNVKYLSVLEQESCQ--FHICKLLIWNHFGRKNIGYMYAIHHGAEYIYDTDDDNVLRRAKIPDPAK---------IKGVKNINMKGTVWNPYPMMSKYPD-SWPRGFPLEKIKSKEAKT-----QSFTDELPLGKIGIIQSLADNEPDVDAIYRFTQPLPFDFHHK-ELYVAVPQGVMTPYNAQATMTMYDAFFSTYLPVTV 327
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134721 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXT1_9STRA3.370e-16794.35Uncharacterized protein (Fragment) n=3 Tax=Tribone... [more]
A0A818LZ82_9BILA1.250e-5441.30Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A812JXG3_SYMPI1.050e-5241.41STL1 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A0G4IGI5_PLABS1.280e-5242.52Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A8B7XWL1_ACAPL9.560e-5144.94probable glycosyltransferase STELLO2 n=1 Tax=Acant... [more]
UPI0014582C463.280e-4940.15probable glycosyltransferase STELLO2 isoform X2 n=... [more]
D7FLI5_ECTSI4.060e-4744.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0H5RCI1_9EUKA5.460e-4640.08Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
UPI0018D8F1E17.780e-4642.51probable glycosyltransferase STELLO1 n=1 Tax=Patir... [more]
A0A1S3JBQ2_LINUN1.100e-4540.08probable glycosyltransferase STELLO2 n=1 Tax=Lingu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:128553..133980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134721|gw1.29.26.1
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
Descriptionplant-type cell wall cellulose biosynthetic process
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28KU8@1|root,2QTAG@2759|Eukaryota
Evalue6.65e-48
Seed ortholog2880.D7FLI5
Hectar predicted targeting categoryother localisation
TranscriptId135043
TrackFilteredModels1
ProteinId134721
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134721gene_9552Tribonema minus UTEX_B_3156 geneContig_29 128553..133980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134721Trimin1|134721|gw1.29.26.1Tribonema minus UTEX_B_3156 polypeptideContig_29 128553..133980 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9552_2exon_9552_2Tribonema minus UTEX_B_3156 exonContig_29 128553..128757 -
exon_9552_1exon_9552_1Tribonema minus UTEX_B_3156 exonContig_29 133445..133980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9552CDS_9552Tribonema minus UTEX_B_3156 CDSContig_29 133445..133980 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9552 ID=mRNA_9552|Name=jgi.p|Trimin1|134721|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=741bp|location=Sequence derived from alignment at Contig_29:128553..133980- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCACCCGCTGGGCAGTTGTCACCACAATATTTGCGCCCACCCCTGCCAC
CAAGGCGGTGGATCAATGGGGGCCCAACTGGTGTCTGCTAGTCATTGCTG
ATAAAGCGGGCCCTGATGCGGCAGAGTACCCACTTGAGCACGGCATATAC
GTGTCCGTAGAGGTGCAGCAGAGCCTTGCTAAGGCTTCCCCTTTTATTGC
GGCGCTCCCATGGAACCATTTTGGGAGGAAGAATGTGGGCTACCTGATTG
CTGCGTTGCATGGAGCGGAAGTTGTGTGGGATTTCGATGACGACAACGTC
CTCAATGCGGCAAAGGCAGCTGGCCCTCTGTCGTGGGTGCTGGATAGCGA
GAGCGGTATTGTCCCTGCAGCACGGAAGTGCAGAGGGCCAGGGGCGGCTT
TTAACCCTTATCCCAGCATGGGTGCGACGGAGTCGCCATGCTGGCCTCGC
GGGTTCCCACTCCAGGACATCAAGTCAGAAGCAGCAAGTGAGCTGGCATG
TGGGCACAGCGCGGCAAGCATTGAGGTGAGGCCAATTAAGGTGGCTGTGC
TGCAGGCGCTGGCTGGCCATGATCCGGATGTGGACGCTATCTATCGCCTC
ACCCGGCCTCTGCCGCTGTACTTCAACTTTGAACCGGAGAAGATCTTGCT
GGTCTCGCGGCGCACCCTTTCCCCATACAACGCTCAAGCCACACTGCACT
TCAAGGCAGGGCTATTCGCGATGCTTCTCCCGGTAACTGTC
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protein sequence of jgi.p|Trimin1|134721

>Trimin1|134721|gw1.29.26.1 ID=Trimin1|134721|gw1.29.26.1|Name=jgi.p|Trimin1|134721|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=247bp
CTRWAVVTTIFAPTPATKAVDQWGPNWCLLVIADKAGPDAAEYPLEHGIY
VSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNV
LNAAKAAGPLSWVLDSESGIVPAARKCRGPGAAFNPYPSMGATESPCWPR
GFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRL
TRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV
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mRNA from alignment at Contig_29:128553..133980-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9552 ID=mRNA_9552|Name=jgi.p|Trimin1|134721|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5428bp|location=Sequence derived from alignment at Contig_29:128553..133980- (Tribonema minus UTEX_B_3156 )
TGCACCCGCTGGGCAGTTGTCACCACAATATTTGCGCCCACCCCTGCCAC
CAAGGCGGTGGATCAATGGGGGCCCAACTGGTGTCTGCTAGTCATTGCTG
ATAAAGCGGGCCCTGATGCGGCAGAGTACCCACTTGAGCACGGCATATAC
GTGTCCGTAGAGGTGCAGCAGAGCCTTGCTAAGGCTTCCCCTTTTATTGC
GGCGCTCCCATGGAACCATTTTGGGAGGAAGAATGTGGGCTACCTGATTG
CTGCGTTGCATGGAGCGGAAGTTGTGTGGGATTTCGATGACGACAACGTC
CTCAATGCGGCAAAGGCAGCTGGCCCTCTGTCGTGGGTGCTGGATAGCGA
GAGCGGTATTGTCCCTGCAGCACGGAAGTGCAGAGGGCCAGGGGCGGCTT
TTAACCCTTATCCCAGCATGGGTGCGACGGAGTCGCCATGCTGGCCTCGC
GGGTTCCCACTCCAGGACATCAAGTCAGAAGCAGCAAGTGAGCTGGCATG
TGGGCACAGCGCGGCAAGCATTGAGGTGAGGCCAATGTGATGCATAATTC
ACCTACACTGCCTCCTCGCCGTTGCATGAGTGTTGGTTCAAGTGGTGAGA
TGATACTGTGACCACTGCATGTTCCAGGACATCTTTTAGTCGAGTGTGTT
TTGCCACAGTTGGGGTCTTTGAAATGGAGAACATGACAAAGATAGCAGCG
CGTGTATCGATACACATACGCACTGACTCACAATGTCATGCAAAAATGTG
CAGAGCAGGAGCCTGACATTAGATCTAGTTTGGATGCACTCAATGGCTAG
AGTTGTTTGATCACACCAATGCAAACTTTTGCAGCAAAACTTCTTTAATA
TCATGGATACGTTTGTAATAGCTTGAGCGAGCAAACTTGTTCAACACCTT
GTTGCAGTAGGGCCCAGCGGCACCGTGGTACGGCCAGCTCCGAAACACCA
TACATGCAGGGTGCACCATTTAGCGCTATGCATAATGATCCTAATGACAC
ACACAAGAATCAATTTACACTACATAAGCATATCGTATACCTCAGAAGAA
CAGGAATATTGAAAGTTTCGCGTCCAATGCAGCGTGCAGAGCACAATGCT
GGACACACTGCAGACGCGGGCAGTTGGCCAGGTTCATGCAGAGATAGCGA
CTTTTTGCCACAACCAATGTTCTTGATGTCATGATTGTTGCGCCGTGCAC
GTGTCACTCTGTCCCCGGACAGGCCCTCATGCTGATTGAGGAAGGCCATA
AACTTGGCCATCTACCCATATTGTAAACAAGTAACAGCATACCTCTGCCT
CCATCACGAATAGACTTCTTTTGCCTGCATTATTACTGCTGCTGTGCTCT
CTCAATGCTCACACCACCCACACAAGTATAAGTTCAACAATGTGGTGATT
TGGCCAGTTCAAGCAGGGAGGGCAGCACTGTGTGACAGTCATCGCAACCG
GTAAGTATCCTGGCCGTGACGCTGTGCGAGGAAGCAAATCATCTCTAAGG
CTTGCATGAGGCAATTGCCAACATGCATGCACTTGACCTCTGCTTCCACC
CTGTCTGCCCATAATCCGACAGTACCGTATTAACATATAATTAAGCCCAT
GGGGCGAGTTTTTATGAGTTTCCGAGCCCTCATAAAATGACCCCCCACCC
TAAATTTTTCGCTCATATAAATGTGCCACCCCCCCCTTTATAGTCACATG
CATCCGCAGCATGTACCCTCTGCGTACGTGTACTATGCACACTCAGTGAC
TCATGCTACTAGTAGTACATCACCACATTATGTGTGCGCGTGTATGCGCT
GTCAGCAACGTGCAGAGCAGACAGAAAGGCAGCCAACAATGTAGCCAAAC
CCACACAAAGGCTCCGAAAGGCAGCAGCTGACTTTCTGGAAGTTGAACTG
GTTTGGGAGCGGCGTAGAAGCATGCTGGCACCTCATGATGGTGTTAGATA
CTGGTTTGGGAGCGGCGTAGAAGCATGCTGGCACCTCATGATGGTGTTAG
ATGAGCTAAAATGGCTCAAACATTAATGCGCCCCACCCTTTTTTCCTCCA
AATATTGATGGCGTCCCCCCCCCCTTTTTCCGCTCTCATACATAAACTCG
CCCCATGGGGGCTTCATTATAGATAATACGGTACCCCCTGCCTGGACCTT
TTAGAGCATGTCCACCGCTGGCAACTTAATCGCCGTCTATGGCGACCCCT
TGGAGGCCAAGAATTGACGTGTGCACCGAGAATCAGTAAATAGTCGTCGA
GCTTGCACTGGCGGTCACCATAACACGCTTCCCCGCAAAACTCTGCATCA
GCTGCGCTTACTGATGCCCAGCAATTTTGCTCGCAGGACCGCCGCCGCAA
CATATTTTGCCAGCTGTAGCACTTCGTGCGCTGCTGGTGCAATTTGCAGC
ATAGACAACCATGGATCTTGCGACGTAGCGGCTACGATAGAGCGCAGCGA
AAGCAGGCGCCTGTATTACGCTGCTGCAACACTGCTGAACGATATGCTGA
AGGTGGACGACTGTGCGCGCACGCGGTAGTTAGGTGCTGCAGCTTACTAG
CGCTGTTGAAGCGGAGGGTCATTTGAGCTCGCTGCAATTGCCGCAGCCCT
ATACATGGCAACAATGGGGGCGTCCAACTTGGATGGCAAGAAAGATAATC
GACGCATGACATCAGCCATAGTCGGCGGTAAGTTCGTGCCGGTGCAGCAG
CGTGCCGTGTAACAGCGTCTCTTCATGGCCAACAGGTGCCGCGAGCCGAT
TAAGTTTGGTGCCGGTGGACACGCTCTTAGTATCATAATGGTAGCTGCGC
CGCTGCATCCCCTCCTCCGCTGAACAGTAGCAGGAGTGCGGCACATTCAA
CACCTGCACAACTCCAGCCGCTCCTGCTGCTTGCTGCAGCGTAGCGGCGC
TGCTGCAGCCAACACTGCTGGTGCAGCAGCTGCTACTGCTGCTACTGCCG
CTTCTGCCCCCTCAGCAGCAGGGACAGGCGAAGTGGACGAATTTTCTGTA
GGCGGCGACACAGTGGAGGATGAGCAAGAGGTATACTATGCATGTATGTA
GTACATCCAGTGCAAGTTTTGCGACAAGCACATGTCTGCAAGCAACCCCG
CACGCACAACTGCTGAGCACATCCACAGCAGTGAATACAACTTGAAGCTG
CAACGGGTGTAGACGAGTCGGGCAGCACTAAGCACTGCAAGGTCGGCGTC
ACTTGCAGCATCATTTGCAGACATCTGTGCCTCTGATGTCATGTGCAATG
GCAGAGTTACTCAAGGGCAGAATTTTTTGTTGGGCAACCCGAGTTTTGAG
TAGGGCAACCCGGTATTATGCCTGTCGTGCACGAGGCCCGTAATCCCTAG
GGGGCAGTTCGGGGGTCAACCATTGCCAAGTACCCTATATGCCCCAGTAA
ACGCCCCCCCCCCTCGTAAACTCCCATGTGCGTGCTTGCCAGGGCAAAGT
GGGCAACAACGCCCACCCCCCCCTTGTAAACGCCCCCTAGCAACCAAAAT
GGTTGCAGGTTGGCACGCGGCCTCGCGAAAACACCCCCGGAAGCCGAATT
AAGCCGCACTTCCAGCCGAACTTGAACTCATCATCGTTCTGAGTGCTTCT
CTACTGCCGATGCATGGTCACACAGGCAACAATGCTCGCTTGACAAGAGC
TGACGTAGCTGCAGCAGCTTTGCCAGCACCGCCATTGCCGTTATCAGAGA
TGTCCGCTATCGCCACCACAACTTTGTGCTCGCACCTTGTAAACGCCCCC
CGAGCCCTAGTAACCCCCCCCCCCCCCCTTGTAAACGCCCCCCCTGCTAG
CTGGCAATTCCAAATGGAGCAGCTAAGCCCGCCCCCCCTTGTACAGCCCC
CCCCCCCCCCTGTATGCGCCCATGGGCGTGCTGTGCAAAGTCCCAGATCC
GCACGCCCGGGGGGGCGTTTACTGGGGCATATACGGTAACTTCATGTTAA
TGAAACTTCTCAAGAACGGTTATGACACAAGTCTGGGAAATGGGCATACT
TTAACTTCAGGTTGATGTTGGACTAGGCTTAGCATACATACATCATTTAC
GATGATTTCGGCACACACGATATACGGCTGAAGGTACGGGTTCACGATTA
TGGTTATAGAGCGAGAACGGTTGTGCGATCACAAGAACAGCTACCATTAC
AGTAACCGTATGGTATGTGTATGGCCTAAGGAGTATATCTTGAACAACCT
GCAATTCGGTAATCCTAACTATTTAACATATCTCATTTTCAGCCCCTCGT
CACCTGCTTGCTGCTGCTGCGGGCGGCATTGCAGCTGCAGTGCACGTTTG
ACACCGCTGCTGCTGCTGCTGCTGCTGCTGCATCTGCTGCGTGGTCCCAC
TGCTACAGCTGCTGCTGCAGTTGCTGCCTGTGCCATGGCACCAGCATCAC
CTACTGAAGGCCCTGTTATTCCCGCATAAACTCTACATTATGCAGTCATC
CTTTTTCTGCTAACCCCCTTATTTGATGTACCGTTTTGGTGATAATCAAG
CCCACGGAGGCGAGGTGTCTGTGAGTTCCTGCTTTCACAAATCGCAGCCC
CACCTGTTTTGGTGCTCACAAAACGCCCCTTCCTCTTCCGTTTCAGCCAG
CATGCACTGCATTTTCCATTGCAACAACACACTGACACTGTTCAAATCCC
ATATTCAACACCAGCTGCTGGTGTTTGCTGGAGATGCTGAGCTGGCCTTT
CAGTGCACTACCGTACAGCATACTGCGTCATTTGACTTCTGCACCTCACA
CAATGATCAGATGGCCTACCGGCAGCGCTACTACGCCATCGCACACCGTC
GTGCCTCTTGCACCAGTACTTGGAGTGTCTTGAACAATTTCTAGGTTTTC
ACGAAATTCTTGTACACCACACACTCAATACCACGCCTGGTTGTGAAGTC
TGGTGAGGCATGCCAATCAGCCCACAACATTACTGCACCCCATTATTTGT
GCAAGCTCACAGAAAGGGCACACCAGGCTCTTGTTTTGCGTCAACAAAAC
AATTTCAACTTGCCCCATGGGCTTATCATCGATAGTACGGTACTTGATTC
TTAGGATTGAAGATGTCACTGGCAGGCTCATGCCTGCAGACCGTGCCAGC
CTAGCCAGAGTCACTTTCTTATTCTCCCTGGATTCATTGTCCTGCACCAT
TTGCAATCAGTCTGCGTGCATCAGCCTGCCGTGCTTTTGTCTTGCTGCGT
GCTACACAGGTGAATGTCACAAGTAAGGTGGCTGTGCTGCAGGCGCTGGC
TGGCCATGATCCGGATGTGGACGCTATCTATCGCCTCACCCGGCCTCTGC
CGCTGTACTTCAACTTTGAACCGGAGAAGATCTTGCTGGTCTCGCGGCGC
ACCCTTTCCCCATACAACGCTCAAGCCACACTGCACTTCAAGGCAGGGCT
ATTCGCGATGCTTCTCCCGGTAACTGTC
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Coding sequence (CDS) from alignment at Contig_29:128553..133980-

>mRNA_9552 ID=mRNA_9552|Name=jgi.p|Trimin1|134721|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=741bp|location=Sequence derived from alignment at Contig_29:128553..133980- (Tribonema minus UTEX_B_3156 )
TGCACCCGCTGGGCAGTTGTCACCACAATATTTGCGCCCACCCCTGCCAC
CAAGGCGGTGGATCAATGGGGGCCCAACTGGTGTCTGCTAGTCATTGCTG
ATAAAGCGGGCCCTGATGCGGCAGAGTACCCACTTGAGCACGGCATATAC
GTGTCCGTAGAGGTGCAGCAGAGCCTTGCTAAGGCTTCCCCTTTTATTGC
GGCGCTCCCATGGAACCATTTTGGGAGGAAGAATGTGGGCTACCTGATTG
CTGCGTTGCATGGAGCGGAAGTTGTGTGGGATTTCGATGACGACAACGTC
CTCAATGCGGCAAAGGCAGCTGGCCCTCTGTCGTGGGTGCTGGATAGCGA
GAGCGGTATTGTCCCTGCAGCACGGAAGTGCAGAGGGCCAGGGGCGGCTT
TTAACCCTTATCCCAGCATGGGTGCGACGGAGTCGCCATGCTGGCCTCGC
GGGTTCCCACTCCAGGACATCAAGTCAGAAGCAGCAAGTGAGCTGGCATG
TGGGCACAGCGCGGCAAGCATTGAGGTGAGGCCAATTAAGGTGGCTGTGC
TGCAGGCGCTGGCTGGCCATGATCCGGATGTGGACGCTATCTATCGCCTC
ACCCGGCCTCTGCCGCTGTACTTCAACTTTGAACCGGAGAAGATCTTGCT
GGTCTCGCGGCGCACCCTTTCCCCATACAACGCTCAAGCCACACTGCACT
TCAAGGCAGGGCTATTCGCGATGCTTCTCCCGGTAACTGTC
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