mRNA_9550 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131842
Unique NamemRNA_9550
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|131842 vs. uniprot
Match: A0A835YXJ0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ0_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.090e-64
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 LLNSPGDLRAAVTHGVLHDLDVVNCHPAIALQLLDLSAPVLVHFNANREQWYADIGAKYAVDRKTAKAIMHKLTFGGGLAFTTDDGRQLVLDSAPLV 291
            LLNSPGDLRAAVTHGVLHDLDVVNCHPAIALQLLDLSAPVLVHFNANREQWYADIGAKYAVDRKTAKAIMHKLTFGGGLAFTTDDGRQLVLDSAPLV
Sbjct:    1 LLNSPGDLRAAVTHGVLHDLDVVNCHPAIALQLLDLSAPVLVHFNANREQWYADIGAKYAVDRKTAKAIMHKLTFGGGLAFTTDDGRQLVLDSAPLV 97
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BLAST of jgi.p|Trimin1|131842 vs. uniprot
Match: A0A835YZN7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.240e-6
Identity = 29/82 (35.37%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:   13 PGDLRAAVTHGVLHDLDVVNCHPAIALQLL---DLSAPVLVHFNANREQWYADIGAKYAVDRKTAKAIMHKLTFGGGLAFTT 249
            P D RAA+T G+LHDLD+VNCH  I         +  P+L  + A RE   + I     + R   K+++ K+T+GG   + +
Sbjct:   72 PRDFRAALTCGLLHDLDMVNCHMHIIAHCCRSHGIDCPLLTEYIACREAVLSRIAMANGLMRDDVKSVILKVTYGGRATYNS 153
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BLAST of jgi.p|Trimin1|131842 vs. uniprot
Match: A0A836CFM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.590e-6
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:    1 LLNSPGDLRAAVTHGVLHDLDVVNCHPAIALQLL---DLSAPVLVHFNANREQWYADIG-AKYAVDRKTAKAIMHKLTFGGGLAFTTDD 255
            L N P D+RA +T+G+LHDLD+ N H  I   L     ++ P L ++  +RE+  A IG A   +DR   K ++ K+  GG   +   D
Sbjct:   85 LQNFPRDIRAILTYGLLHDLDMANAHMHIIQYLCREYGITCPQLDYYIEHREEILARIGNANDDMDRDACKTVVLKVACGGQATYDNKD 173
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BLAST of jgi.p|Trimin1|131842 vs. uniprot
Match: A0A835Z9N3_9STRA (Herpes_ori_bp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.850e-5
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:   13 PGDLRAAVTHGVLHDLDVVNCHPAIALQLL---DLSAPVLVHFNANREQWYADIGAKYAVDRKTAKAIMHKLTFG 228
            P D+RAA+T G+LHDLD+VNCH  I         +  P+L  + A RE   + I     + R   K ++ K+T+G
Sbjct:  108 PRDIRAALTCGLLHDLDMVNCHMHIIAHCCRSHGIDCPLLTEYIACREAVLSRIAMANGLMRDDVKCVILKVTYG 182
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BLAST of jgi.p|Trimin1|131842 vs. uniprot
Match: A0A836C9D4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9D4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.950e-5
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:    1 LLNSPGDLRAAVTHGVLHDLDVVNCHPAIALQLL---DLSAPVLVHFNANREQWYADIGAKYAVDRKTAKAIMHKLTFGGGLAFTTDD 255
            L N P D+RA +T+G+LHDLD+ N H  I   L     ++ P L ++  +R++  A I     +DR   K ++ K++ GG   +   D
Sbjct:   85 LQNFPRDIRAILTYGLLHDLDMENAHMHIIQYLCREYGITCPQLDYYIEHRDEILARIMDANELDRDACKTVVLKVSCGGSATYDKKD 172
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131842 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YXJ0_9STRA1.090e-64100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YZN7_9STRA2.240e-635.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFM6_9STRA3.590e-635.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9N3_9STRA1.850e-537.33Herpes_ori_bp domain-containing protein n=1 Tax=Tr... [more]
A0A836C9D4_9STRA1.950e-532.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:118963..119253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131842|gw1.29.12.1
Hectar predicted targeting categoryother localisation
TranscriptId132164
TrackFilteredModels1
ProteinId131842
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131842gene_9550Tribonema minus UTEX_B_3156 geneContig_29 118963..119253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9550_1exon_9550_1Tribonema minus UTEX_B_3156 exonContig_29 118963..119253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9550CDS_9550Tribonema minus UTEX_B_3156 CDSContig_29 118963..119253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131842Trimin1|131842|gw1.29.12.1Tribonema minus UTEX_B_3156 polypeptideContig_29 118963..119253 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9550 ID=mRNA_9550|Name=jgi.p|Trimin1|131842|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=291bp|location=Sequence derived from alignment at Contig_29:118963..119253- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGAACTCCCCCGGCGACCTCCGCGCGGCGGTGACGCACGGCGTGCT
GCACGACCTGGACGTCGTCAACTGCCACCCCGCCATCGCGCTCCAGCTGC
TGGACTTGAGCGCGCCCGTGCTCGTGCACTTCAACGCCAACCGCGAGCAG
TGGTACGCCGACATCGGCGCCAAGTACGCCGTCGACCGCAAGACGGCGAA
GGCCATCATGCACAAGCTGACGTTCGGCGGCGGCCTCGCCTTCACCACGG
ACGACGGCAGGCAGCTGGTGCTGGACTCGGCGCCGCTCGTC
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protein sequence of jgi.p|Trimin1|131842

>Trimin1|131842|gw1.29.12.1 ID=Trimin1|131842|gw1.29.12.1|Name=jgi.p|Trimin1|131842|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=97bp
LLNSPGDLRAAVTHGVLHDLDVVNCHPAIALQLLDLSAPVLVHFNANREQ
WYADIGAKYAVDRKTAKAIMHKLTFGGGLAFTTDDGRQLVLDSAPLV
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mRNA from alignment at Contig_29:118963..119253-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9550 ID=mRNA_9550|Name=jgi.p|Trimin1|131842|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=291bp|location=Sequence derived from alignment at Contig_29:118963..119253- (Tribonema minus UTEX_B_3156 )
CTGCTGAACTCCCCCGGCGACCTCCGCGCGGCGGTGACGCACGGCGTGCT
GCACGACCTGGACGTCGTCAACTGCCACCCCGCCATCGCGCTCCAGCTGC
TGGACTTGAGCGCGCCCGTGCTCGTGCACTTCAACGCCAACCGCGAGCAG
TGGTACGCCGACATCGGCGCCAAGTACGCCGTCGACCGCAAGACGGCGAA
GGCCATCATGCACAAGCTGACGTTCGGCGGCGGCCTCGCCTTCACCACGG
ACGACGGCAGGCAGCTGGTGCTGGACTCGGCGCCGCTCGTC
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Coding sequence (CDS) from alignment at Contig_29:118963..119253-

>mRNA_9550 ID=mRNA_9550|Name=jgi.p|Trimin1|131842|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=291bp|location=Sequence derived from alignment at Contig_29:118963..119253- (Tribonema minus UTEX_B_3156 )
CTGCTGAACTCCCCCGGCGACCTCCGCGCGGCGGTGACGCACGGCGTGCT
GCACGACCTGGACGTCGTCAACTGCCACCCCGCCATCGCGCTCCAGCTGC
TGGACTTGAGCGCGCCCGTGCTCGTGCACTTCAACGCCAACCGCGAGCAG
TGGTACGCCGACATCGGCGCCAAGTACGCCGTCGACCGCAAGACGGCGAA
GGCCATCATGCACAAGCTGACGTTCGGCGGCGGCCTCGCCTTCACCACGG
ACGACGGCAGGCAGCTGGTGCTGGACTCGGCGCCGCTCGTC
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