mRNA_9533 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352031
Unique NamemRNA_9533
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352031 vs. uniprot
Match: A0A835ZJY6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJY6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.090e-16
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 
Query:  108 RSTEQCCAERCGCAGVSNNTATQGLAKTAGWQC 206
            RSTEQCCAERCGCAGVSNNTATQGLAKTAGWQC
Sbjct:   36 RSTEQCCAERCGCAGVSNNTATQGLAKTAGWQC 68
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352031 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZJY6_9STRA9.090e-16100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:487210..488751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352031|estExt_Genemark1.C_Ctg_1060074
Hectar predicted targeting categorysignal peptide
TranscriptId352353
TrackFilteredModels1
ProteinId352031
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352031gene_9533Tribonema minus UTEX_B_3156 geneContig_106 487210..488751 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9533_2exon_9533_2Tribonema minus UTEX_B_3156 exonContig_106 487210..487437 -
exon_9533_1exon_9533_1Tribonema minus UTEX_B_3156 exonContig_106 488584..488751 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9533UTR3_9533Tribonema minus UTEX_B_3156 three_prime_UTRContig_106 487210..487396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9533CDS_9533Tribonema minus UTEX_B_3156 CDSContig_106 488584..488749 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9533UTR5_9533Tribonema minus UTEX_B_3156 five_prime_UTRContig_106 488750..488751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352031Trimin1|352031|estExt_Genemark1.C_Ctg_1060074Tribonema minus UTEX_B_3156 polypeptideContig_106 487397..488749 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9533 ID=mRNA_9533|Name=jgi.p|Trimin1|352031|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_106:487210..488751- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGCGGCGGCGGCGGCGGCGGCGGGCGCGGCGGCGGCCACAGGGGCGGCG
GCAGCGGCCGCAGACGCGGCGGCGGCAGCGGCAGCGGCGGCGGCGACCAC
CACGGCGAGGAGCACTGAGCAATGCTGTGCTGAGCGTTGTGGTTGTGCGG
GCGTCTCTAATAACACAGCGACGCAGGGGCTAGCAAAGACAGCTGGGTGG
CAGTGTTAGTGAGAGTTGGTGTGTGTGTGTTGGGGGCGAGTGACAGAGCG
GCGATAGGGCTGGTGCTGGCGTGAATCAGTGATGAAAACAAGTGACAAAG
CGTTGTGCGCTGGTCATTTGGGGAGGCCGGCGGGACGGCGGTGCGGCACG
GAACAAATAGACGATATTTTTGCTCCATTTGGAAGGGAGGCATGCA
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protein sequence of jgi.p|Trimin1|352031

>Trimin1|352031|estExt_Genemark1.C_Ctg_1060074 ID=Trimin1|352031|estExt_Genemark1.C_Ctg_1060074|Name=jgi.p|Trimin1|352031|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=69bp
AAAAAAAGAAAATGAAAAAADAAAAAAAAAATTTARSTEQCCAERCGCAG
VSNNTATQGLAKTAGWQC*
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mRNA from alignment at Contig_106:487210..488751-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9533 ID=mRNA_9533|Name=jgi.p|Trimin1|352031|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1542bp|location=Sequence derived from alignment at Contig_106:487210..488751- (Tribonema minus UTEX_B_3156 )
GGGCGGCGGCGGCGGCGGCGGCGGGCGCGGCGGCGGCCACAGGGGCGGCG
GCAGCGGCCGCAGACGCGGCGGCGGCAGCGGCAGCGGCGGCGGCGACCAC
CACGGCGAGGAGCACTGAGCAATGCTGTGCTGAGCGTTGTGGTTGTGCGG
GCGTCTCTAATAACACAGGTGGGTGTGGCGATTGCAGATGCTGCTGCGAG
AGGCTGCACGTGCGAATGACTGCTCGGTGGCGGCGCGCCGTCGTGCGCAT
TTCATGTTATTAGATGTGTTGTGGAATCACGAAGCGCGCTGAGCGTTGAG
CATCCACATGCGTGGGTTGGCGCCTTCAAGGCCGCAGATGTGGCGGTCTA
CCGCTGAAGTGTCAGAGTGGCGCCCAGGCAACGCAGTACGCCGTTATCAT
TTGCGCAAATGCTGTCTTACACCAGGGGCAAACCGCTGAGTAGGTACTGA
GCATGCTGCCGGTGTATACTACTTCAAAATGTTAGTGTAATTTAGTCGCG
ACAAAAGTCGCTGCATCAAATCAACAGCACGGGCTTTTGGAAACAGCCTC
GCGTGGCCGCTGTGACGGAGGGTTAATGCTCAGACTCAGCACGTTGAGGG
AGGAACAGGATATGTGCTGCATGTCCTACGATGGAGGATGTTGACTTGTG
TGAGTGAGGCATGTCATAAGTGGATTCTGCTGCTGGTGACACTCACACAC
GACACGAGCAGTTTGTGCCCTGAAAGGGTACCGGCCTCTCAGTCTTGGTC
ATGCTGTATTGCTGACACCCGATGGCGGTGATGCTCGTTTGCATGCAGCA
AGAAGCTTGCAGATTCAGTCATTCAGACATTGATACAGCAGTGCTAGGAA
GTTTGACCCAAACTTCAAGTACAGTTGGAACGTGGTTGCGGCTCTCAGCG
TGTTGCATTAGTAGCAGAACACAGTCACCGTGCAATTGACATTCATAGCT
GGCACAAACACATGAGACCGACCAGTTCACGTGCGCTGCAATCGTCAGGA
TGGACAGTGCCTGCCCGCTTGTCTCTGCAGTCGCATCGGCATCTGCATGT
CACAGTGGGAGGTGTTGGCTGACGAGAAGGCCTGCGCGCTTACGTTGAGC
TGTGCCACATGTTCAGTAGCAGTTACGCATGAGAATTGCAATTTGGAGAG
CATGAGCTTGCATCCAATTACCCTTGTAGCGCCCCCCCCCCCCCCCTTGT
TCACTGTCATCTCACAGATCTCTCTGGGTCACAGTCTCAGATTAGCACCA
AGTGACTGACTCATTGCACACGCTGATTTGCTCATTTCCCCCATTGCTCT
TGACGCCCGTGCAGCGACGCAGGGGCTAGCAAAGACAGCTGGGTGGCAGT
GTTAGTGAGAGTTGGTGTGTGTGTGTTGGGGGCGAGTGACAGAGCGGCGA
TAGGGCTGGTGCTGGCGTGAATCAGTGATGAAAACAAGTGACAAAGCGTT
GTGCGCTGGTCATTTGGGGAGGCCGGCGGGACGGCGGTGCGGCACGGAAC
AAATAGACGATATTTTTGCTCCATTTGGAAGGGAGGCATGCA
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Coding sequence (CDS) from alignment at Contig_106:487210..488751-

>mRNA_9533 ID=mRNA_9533|Name=jgi.p|Trimin1|352031|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=207bp|location=Sequence derived from alignment at Contig_106:487210..488751- (Tribonema minus UTEX_B_3156 )
GCGGCGGCGGCGGCGGCGGCGGGCGCGGCGGCGGCCACAGGGGCGGCGGC
AGCGGCCGCAGACGCGGCGGCGGCAGCGGCAGCGGCGGCGGCGACCACCA
CGGCGAGGAGCACTGAGCAATGCTGTGCTGAGCGTTGTGGTTGTGCGGGC
GTCTCTAATAACACAGCGACGCAGGGGCTAGCAAAGACAGCTGGGTGGCA
GTGTTAG
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