mRNA_9525 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A836CQT4_9STRA (ZT_dimer domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQT4_9STRA) HSP 1 Score: 472 bits (1215), Expect = 5.040e-166 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 2
Query: 98 MSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVMLGGVEGVRGFDSIRSRRMGPQTLVDLTIQIAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVETYMAVEARAGTGGSSDSFYGSSKLRANLLSNLLDRASSGRKGGAGGAGDWEQSSWADDKHT 841
MSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVMLGGVEGVRGFDSIRSRRMGPQTLVDLTIQIAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVETYMAVEARAGTGGSSDSFYGSSKLRANLLSNLLDRASSGRKGGAGGAGDWEQSSWADDKHT
Sbjct: 1 MSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVMLGGVEGVRGFDSIRSRRMGPQTLVDLTIQIAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVETYMAVEARAGTGGSSDSFYGSSKLRANLLSNLLDRASSGRKGGAGGAGDWEQSSWADDKHT 248
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: D7G7A9_ECTSI (Cation efflux protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A9_ECTSI) HSP 1 Score: 218 bits (556), Expect = 3.190e-62 Identity = 129/264 (48.86%), Postives = 168/264 (63.64%), Query Frame = 2
Query: 2 LAGLAALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVM----LGGVE-----------------------------GVRGFDSIRSRRMGPQTLVDLTIQ------------IAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVE 658
L +AA VSI+AKEAL+RAT A+ +R NS VL++NA HHRTDAVSSVVAL+A+ G+M GAP+LDP+AGL V L GV+ GV FD +R+RRMGPQTLVDLTIQ I QR R+ IL +LP V+DV+V AV+ KPCP + LRP +IE D+R VV +L E+ VPK+ VHY + T+A+VF+RVDP L++ +A IA + +R L + + DLCS +VHLDL+E
Sbjct: 330 LTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMSGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRKVAEIATQVPGVLSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVEPKPCPAMSSLRPQEDIEQDIRDVVLSKLPEIESVPKIMVHYINMVTTAEVFIRVDPNLKIRDAADIARRTKRALSSSVHDLCSSEVHLDLLE 593
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S2V756_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V756_9STRA) HSP 1 Score: 163 bits (413), Expect = 9.970e-43 Identity = 111/259 (42.86%), Postives = 143/259 (55.21%), Query Frame = 2
Query: 14 AALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV---------------------------------MLGGVEGVRGFDSIRSRRMGPQTLVDLTI------------QIAQRARFAILKKLPMVSDVIVTTAVD-EKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
AALVSIV+KE LYR TA V ++ NS VL++NA HHR+DA+SS VA+ +VGA G P+LDPLAGL V +L VEGV+G +R+R MG TLVD+ I Q+A+RAR+ +L+ +PMVSDV+VT +K CPV+ LRPH EIE DVRR V V ++ HY + DVFV VDP +RV EA I +V + I D+ D+HLDL
Sbjct: 169 AALVSIVSKELLYRVTARVGKKLNSQVLIANAWHHRSDALSSFVAVGGIVGATMGLPVLDPLAGLMVSAMLTLTGLQCGWDSVKALTDTADTAMVSKLGALLDQVEGVQGHSQLRARSMGSDTLVDVKIHTHPRISASAAHQVAERARWHLLRNVPMVSDVLVTLDTSGDKICPVTATLRPHSEIEKDVRRTVAPI--PGVQVTRMMAHYNDMMAEVDVFVTVDPNIRVSEASRIGKKVCAA-IEGITDIRKADIHLDL 424
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S4DFL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFL3_HETAK) HSP 1 Score: 162 bits (410), Expect = 9.130e-42 Identity = 104/258 (40.31%), Postives = 146/258 (56.59%), Query Frame = 2
Query: 14 AALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVM---------------------------------LGGVEGVRGFDSIRSRRMGPQTLVDLTIQ------------IAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
AA++SIV+KE LYR TA V R NS VL++NA HHR+DA+SSV+A V + GAM G P+LD LAGL V +G VEGV GFD++R+RRMG Q LVD+ IQ IA+R R+ +LK +P VSDV+VT + ++KPCPV + L +I+ +V + + ++T V + TVHY + S DVF++VD +LRV + + L N + D+ ++HLDL
Sbjct: 247 AAVISIVSKELLYRVTAKVGERLNSQVLIANAWHHRSDALSSVIAFVGIGGAMMGVPVLDSLAGLMVAGMLSLTGLQLGWESVKQLTDTAENDCIDEIGAAVGKVEGVLGFDNLRARRMGSQMLVDVRIQCDPYISATAAHQIAERTRWHVLKIVPQVSDVLVTVSGEQKPCPVVSSLPTQEKIQ-EVVQTTLSDFPDITQVTRTTVHYKNMVPSVDVFIQVDEKLRVEQVKRVGELAAHALSN-LNDIGRAEIHLDL 502
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: W7U980_9STRA (Cation efflux protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U980_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.840e-37 Identity = 103/269 (38.29%), Postives = 147/269 (54.65%), Query Frame = 2
Query: 2 LAGLAALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV--MLG-------------------------------GVEGVRGFDSIRSRRMGPQTLVDLTI------------QIAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELRE----VTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVET 661
LA +AA SIV KE LY+ TA+V +HNS V+++NA HHR+DA+SS++AL +V A G LDP+AG+ V M+G VEGVR +R+RRMGPQ LVDL I Q+A + R+ + + P VS+V+V T + PCP++ LR +IE DVR + + + V V KV VHY ++ + DV +++DP L V EA +A +V+++L IKD+ +VHLDL T
Sbjct: 424 LAVVAATASIVVKELLYQITASVGIKHNSQVVLANAWHHRSDAISSIMALGGIVAARAGLAALDPIAGILVTAMIGLTGMQIFLDSMNQLTDTVESDAIPGIRRVAASVEGVRDTSDVRARRMGPQLLVDLRILVDSQISASAAQQVADQVRWRVRRDFPNVSEVLVHTVTEPLPCPLAMELRQPSDIEADVRAALGPDWAQQEPLVLAVRKVMVHYVSMAPTVDVLLQIDPDLSVREAGEVARRVQKLLEG-IKDVTKAEVHLDLTST 691
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S2RL19_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL19_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.130e-35 Identity = 106/265 (40.00%), Postives = 146/265 (55.09%), Query Frame = 2
Query: 2 LAGLAALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVM-LGGVEGVR-GFDS---------------------------------IRSRRMGPQTLVDLTIQI------------AQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELR-EVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
LA AA+VSI++KE LYRATA V +R NS VL++NA HHR+DA SSVVALV +VGA+ G P+LDPLAGL V + + G++ G+DS +R+RRMG LVDL +QI A+ R+ IL+ +P VS+V+V + CP+ LRP IE +VR V+R LR E++ V KVTVHY + +V V VD LR+ + +A + R + I+D+ +V L L
Sbjct: 123 LAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQVGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHVVSQPQSCPMMAQLRPAEAIEAEVRSVLRNSLRKELSTVHKVTVHYLNMQPCVEVLVDVDDDLRLADLRQLAHRARTA-IEAIEDVARAEVQLYL 386
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S2RMB7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMB7_9STRA) HSP 1 Score: 144 bits (364), Expect = 7.910e-35 Identity = 106/265 (40.00%), Postives = 146/265 (55.09%), Query Frame = 2
Query: 2 LAGLAALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVM-LGGVEGVR-GFDS---------------------------------IRSRRMGPQTLVDLTIQI------------AQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELR-EVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
LA AA+VSI++KE LYRATA V +R NS VL++NA HHR+DA SSVVALV +VGA+ G P+LDPLAGL V + + G++ G+DS +R+RRMG LVDL +QI A+ R+ IL+ +P VS+V+V + CP+ LRP IE +VR V+R LR E++ V KVTVHY + +V V VD LR+ + +A + R + I+D+ +V L L
Sbjct: 284 LAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQVGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHVVSQPQSCPMMAQLRPAEAIEAEVRSVLRNSLRKELSTVHKVTVHYLNMQPCVEVLVDVDDDLRLADLRQLAHRARTA-IEAIEDVARAEVQLYL 547
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A3D5HED6_9DELT (Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3D5HED6_9DELT) HSP 1 Score: 139 bits (349), Expect = 5.530e-34 Identity = 95/266 (35.71%), Postives = 141/266 (53.01%), Query Frame = 2
Query: 23 VSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV----------------------------------MLGGVEGVRGFDSIRSRRMGPQTLVDLTIQI------------AQRARFAILKKLPMVSDVIVTTAVDEKPCPVSN----------VLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
++I+ KEAL+ T V RR S VLM+NA HHR+DA+SSV AL+ + GA G PL+DP+AG+ V ++ G+EGV + +R+RRMGP LVDL IQ+ A+R R IL+KLP V++V+V VD + V + ++RP GEIE DV++V+ E+ E+ + + HY + V + +D +R+ +A IAS RR + +IKD+ S D+HL+L
Sbjct: 123 IAIIVKEALFHVTRMVGRRTGSRVLMANAWHHRSDAISSVAALLGIAGAQLGIPLMDPIAGMLVAGLIIKTGIDIGYESIRELTDETVEEDVISELGKIMSGIEGVDHYHEMRARRMGPHLLVDLHIQVDSMMSISAAHQVAERVRLEILEKLPAVNEVLVH--VDAEDDHVGDEGSELLQDIVLMRPQGEIENDVKKVLA-EIPEIQGITHIYCHYLNQKLTVQVNILLDAEMRIRDAQKIASAARRK-IEQIKDIDSADLHLEL 384
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S4B4U6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B4U6_CHRCT) HSP 1 Score: 134 bits (336), Expect = 2.470e-31 Identity = 99/264 (37.50%), Postives = 138/264 (52.27%), Query Frame = 2
Query: 14 AALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV---------------------------------MLGGVEGVRGFDSIRSRRMGPQTLVDLTIQI------------AQRARFAILKKLPMVSDVIV--TTAVDEKPCPVSNVL----RPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
AA+ SI++KE L+RATA + RR NS +LM+NA HHR+DA+SSVVA++ + GAM G P+LDP+AGL V + G+ GV+ IRSR MG +LVDL IQ+ A+ R +L +P VS+V+V TA + CP+ + R H E+E VR+ + Q LRE+T V V VHY + DV + LRV E +A+ RR L+ D+ +V V +DL
Sbjct: 246 AAVASILSKEILFRATARIGRRLNSQMLMANAWHHRSDALSSVVAVLGIAGAMLGLPVLDPIAGLLVAGMVSSMGLRIGIEAVMELTDTHDFEATQSVHRVATGIPGVQRAWQIRSRSMGGASLVDLAIQVEPKLTASSAHKVAEEVRMEVLNSVPRVSEVLVHVDTAPHDASCPLQTQVMQSARSHLEVEEQVRQELSQ-LRELTGVTSVLVHYLPAGLTVDVQATMADHLRVDELRGVAAVARRKLMQSAPDITAVRVSVDL 508
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A352RI22_9DELT (ZT_dimer domain-containing protein n=16 Tax=root TaxID=1 RepID=A0A352RI22_9DELT) HSP 1 Score: 130 bits (327), Expect = 7.580e-31 Identity = 91/265 (34.34%), Postives = 137/265 (51.70%), Query Frame = 2
Query: 23 VSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV----------------------------------MLGGVEGVRGFDSIRSRRMGPQTLVDLTI------------QIAQRARFAILKKLPMVSDVIVTTAVD---------EKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
++I KE LY AT VARR S +L++NA HHR+DA+SSV ALV + GA G PL+DP+AG+ V +L G+EGV + +R+RRMGP LVDL I Q+A+R R IL+KLP V++V+V + E P + ++RP EIE DV++ + + E+ + + HY + V + +D +R+ +A IAS R + + +IKD+ + D+HL+L
Sbjct: 123 IAIAVKEVLYHATRMVARRTGSRILLANAWHHRSDAISSVAALVGIGGAQWGLPLMDPIAGVLVAGLIIKTGINIGYESIRELTDETAEEEVISELGQILSGIEGVDHYHEMRARRMGPHLLVDLHIEVDSMMSISAAHQVAERVRLGILEKLPAVNEVLVHVDAEDDFFEAEGTEDPQKIV-LMRPQSEIENDVKKAL-SVIPEIEGITHIYCHYLNQELTVQVNILLDVEMRISDAQKIASAAR-MKIEQIKDINAADLHLEL 384 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9525 ID=mRNA_9525|Name=jgi.p|Trimin1|352028|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1095bp|location=Sequence derived from alignment at Contig_106:409955..413862- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTTGGCCGGTCTGGCGGCGCTGGTGTCCATTGTGGCCAAGGAGGCCTTGTback to top protein sequence of jgi.p|Trimin1|352028 >Trimin1|352028|estExt_Genemark1.C_Ctg_1060068 ID=Trimin1|352028|estExt_Genemark1.C_Ctg_1060068|Name=jgi.p|Trimin1|352028|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp MSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVMLGGVEGVRGFback to top mRNA from alignment at Contig_106:409955..413862- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9525 ID=mRNA_9525|Name=jgi.p|Trimin1|352028|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3908bp|location=Sequence derived from alignment at Contig_106:409955..413862- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_106:409955..413862- >mRNA_9525 ID=mRNA_9525|Name=jgi.p|Trimin1|352028|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_106:409955..413862- (Tribonema minus UTEX_B_3156 )back to top |