mRNA_9525 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352028
Unique NamemRNA_9525
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A836CQT4_9STRA (ZT_dimer domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQT4_9STRA)

HSP 1 Score: 472 bits (1215), Expect = 5.040e-166
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 2
Query:   98 MSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVMLGGVEGVRGFDSIRSRRMGPQTLVDLTIQIAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVETYMAVEARAGTGGSSDSFYGSSKLRANLLSNLLDRASSGRKGGAGGAGDWEQSSWADDKHT 841
            MSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVMLGGVEGVRGFDSIRSRRMGPQTLVDLTIQIAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVETYMAVEARAGTGGSSDSFYGSSKLRANLLSNLLDRASSGRKGGAGGAGDWEQSSWADDKHT
Sbjct:    1 MSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVMLGGVEGVRGFDSIRSRRMGPQTLVDLTIQIAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVETYMAVEARAGTGGSSDSFYGSSKLRANLLSNLLDRASSGRKGGAGGAGDWEQSSWADDKHT 248          
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: D7G7A9_ECTSI (Cation efflux protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A9_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 3.190e-62
Identity = 129/264 (48.86%), Postives = 168/264 (63.64%), Query Frame = 2
Query:    2 LAGLAALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVM----LGGVE-----------------------------GVRGFDSIRSRRMGPQTLVDLTIQ------------IAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVE 658
            L  +AA VSI+AKEAL+RAT A+ +R NS VL++NA HHRTDAVSSVVAL+A+ G+M GAP+LDP+AGL V     L GV+                             GV  FD +R+RRMGPQTLVDLTIQ            I QR R+ IL +LP V+DV+V  AV+ KPCP  + LRP  +IE D+R VV  +L E+  VPK+ VHY  + T+A+VF+RVDP L++ +A  IA + +R L + + DLCS +VHLDL+E
Sbjct:  330 LTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMSGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRKVAEIATQVPGVLSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVEPKPCPAMSSLRPQEDIEQDIRDVVLSKLPEIESVPKIMVHYINMVTTAEVFIRVDPNLKIRDAADIARRTKRALSSSVHDLCSSEVHLDLLE 593          
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S2V756_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V756_9STRA)

HSP 1 Score: 163 bits (413), Expect = 9.970e-43
Identity = 111/259 (42.86%), Postives = 143/259 (55.21%), Query Frame = 2
Query:   14 AALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV---------------------------------MLGGVEGVRGFDSIRSRRMGPQTLVDLTI------------QIAQRARFAILKKLPMVSDVIVTTAVD-EKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
            AALVSIV+KE LYR TA V ++ NS VL++NA HHR+DA+SS VA+  +VGA  G P+LDPLAGL V                                 +L  VEGV+G   +R+R MG  TLVD+ I            Q+A+RAR+ +L+ +PMVSDV+VT     +K CPV+  LRPH EIE DVRR V         V ++  HY  +    DVFV VDP +RV EA  I  +V    +  I D+   D+HLDL
Sbjct:  169 AALVSIVSKELLYRVTARVGKKLNSQVLIANAWHHRSDALSSFVAVGGIVGATMGLPVLDPLAGLMVSAMLTLTGLQCGWDSVKALTDTADTAMVSKLGALLDQVEGVQGHSQLRARSMGSDTLVDVKIHTHPRISASAAHQVAERARWHLLRNVPMVSDVLVTLDTSGDKICPVTATLRPHSEIEKDVRRTVAPI--PGVQVTRMMAHYNDMMAEVDVFVTVDPNIRVSEASRIGKKVCAA-IEGITDIRKADIHLDL 424          
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S4DFL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFL3_HETAK)

HSP 1 Score: 162 bits (410), Expect = 9.130e-42
Identity = 104/258 (40.31%), Postives = 146/258 (56.59%), Query Frame = 2
Query:   14 AALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVM---------------------------------LGGVEGVRGFDSIRSRRMGPQTLVDLTIQ------------IAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
            AA++SIV+KE LYR TA V  R NS VL++NA HHR+DA+SSV+A V + GAM G P+LD LAGL V                                  +G VEGV GFD++R+RRMG Q LVD+ IQ            IA+R R+ +LK +P VSDV+VT + ++KPCPV + L    +I+ +V +    +  ++T V + TVHY  +  S DVF++VD +LRV +   +       L N + D+   ++HLDL
Sbjct:  247 AAVISIVSKELLYRVTAKVGERLNSQVLIANAWHHRSDALSSVIAFVGIGGAMMGVPVLDSLAGLMVAGMLSLTGLQLGWESVKQLTDTAENDCIDEIGAAVGKVEGVLGFDNLRARRMGSQMLVDVRIQCDPYISATAAHQIAERTRWHVLKIVPQVSDVLVTVSGEQKPCPVVSSLPTQEKIQ-EVVQTTLSDFPDITQVTRTTVHYKNMVPSVDVFIQVDEKLRVEQVKRVGELAAHALSN-LNDIGRAEIHLDL 502          
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: W7U980_9STRA (Cation efflux protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U980_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.840e-37
Identity = 103/269 (38.29%), Postives = 147/269 (54.65%), Query Frame = 2
Query:    2 LAGLAALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV--MLG-------------------------------GVEGVRGFDSIRSRRMGPQTLVDLTI------------QIAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELRE----VTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVET 661
            LA +AA  SIV KE LY+ TA+V  +HNS V+++NA HHR+DA+SS++AL  +V A  G   LDP+AG+ V  M+G                                VEGVR    +R+RRMGPQ LVDL I            Q+A + R+ + +  P VS+V+V T  +  PCP++  LR   +IE DVR  +  +  +    V  V KV VHY  ++ + DV +++DP L V EA  +A +V+++L   IKD+   +VHLDL  T
Sbjct:  424 LAVVAATASIVVKELLYQITASVGIKHNSQVVLANAWHHRSDAISSIMALGGIVAARAGLAALDPIAGILVTAMIGLTGMQIFLDSMNQLTDTVESDAIPGIRRVAASVEGVRDTSDVRARRMGPQLLVDLRILVDSQISASAAQQVADQVRWRVRRDFPNVSEVLVHTVTEPLPCPLAMELRQPSDIEADVRAALGPDWAQQEPLVLAVRKVMVHYVSMAPTVDVLLQIDPDLSVREAGEVARRVQKLLEG-IKDVTKAEVHLDLTST 691          
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S2RL19_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL19_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.130e-35
Identity = 106/265 (40.00%), Postives = 146/265 (55.09%), Query Frame = 2
Query:    2 LAGLAALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVM-LGGVEGVR-GFDS---------------------------------IRSRRMGPQTLVDLTIQI------------AQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELR-EVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
            LA  AA+VSI++KE LYRATA V +R NS VL++NA HHR+DA SSVVALV +VGA+ G P+LDPLAGL V  +  + G++ G+DS                                 +R+RRMG   LVDL +QI            A+  R+ IL+ +P VS+V+V      + CP+   LRP   IE +VR V+R  LR E++ V KVTVHY  +    +V V VD  LR+ +   +A + R   +  I+D+   +V L L
Sbjct:  123 LAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQVGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHVVSQPQSCPMMAQLRPAEAIEAEVRSVLRNSLRKELSTVHKVTVHYLNMQPCVEVLVDVDDDLRLADLRQLAHRARTA-IEAIEDVARAEVQLYL 386          
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S2RMB7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMB7_9STRA)

HSP 1 Score: 144 bits (364), Expect = 7.910e-35
Identity = 106/265 (40.00%), Postives = 146/265 (55.09%), Query Frame = 2
Query:    2 LAGLAALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVM-LGGVEGVR-GFDS---------------------------------IRSRRMGPQTLVDLTIQI------------AQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIEGDVRRVVRQELR-EVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
            LA  AA+VSI++KE LYRATA V +R NS VL++NA HHR+DA SSVVALV +VGA+ G P+LDPLAGL V  +  + G++ G+DS                                 +R+RRMG   LVDL +QI            A+  R+ IL+ +P VS+V+V      + CP+   LRP   IE +VR V+R  LR E++ V KVTVHY  +    +V V VD  LR+ +   +A + R   +  I+D+   +V L L
Sbjct:  284 LAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQVGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHVVSQPQSCPMMAQLRPAEAIEAEVRSVLRNSLRKELSTVHKVTVHYLNMQPCVEVLVDVDDDLRLADLRQLAHRARTA-IEAIEDVARAEVQLYL 547          
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A3D5HED6_9DELT (Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3D5HED6_9DELT)

HSP 1 Score: 139 bits (349), Expect = 5.530e-34
Identity = 95/266 (35.71%), Postives = 141/266 (53.01%), Query Frame = 2
Query:   23 VSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV----------------------------------MLGGVEGVRGFDSIRSRRMGPQTLVDLTIQI------------AQRARFAILKKLPMVSDVIVTTAVDEKPCPVSN----------VLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
            ++I+ KEAL+  T  V RR  S VLM+NA HHR+DA+SSV AL+ + GA  G PL+DP+AG+ V                                  ++ G+EGV  +  +R+RRMGP  LVDL IQ+            A+R R  IL+KLP V++V+V   VD +   V +          ++RP GEIE DV++V+  E+ E+  +  +  HY     +  V + +D  +R+ +A  IAS  RR  + +IKD+ S D+HL+L
Sbjct:  123 IAIIVKEALFHVTRMVGRRTGSRVLMANAWHHRSDAISSVAALLGIAGAQLGIPLMDPIAGMLVAGLIIKTGIDIGYESIRELTDETVEEDVISELGKIMSGIEGVDHYHEMRARRMGPHLLVDLHIQVDSMMSISAAHQVAERVRLEILEKLPAVNEVLVH--VDAEDDHVGDEGSELLQDIVLMRPQGEIENDVKKVLA-EIPEIQGITHIYCHYLNQKLTVQVNILLDAEMRIRDAQKIASAARRK-IEQIKDIDSADLHLEL 384          
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A7S4B4U6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B4U6_CHRCT)

HSP 1 Score: 134 bits (336), Expect = 2.470e-31
Identity = 99/264 (37.50%), Postives = 138/264 (52.27%), Query Frame = 2
Query:   14 AALVSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV---------------------------------MLGGVEGVRGFDSIRSRRMGPQTLVDLTIQI------------AQRARFAILKKLPMVSDVIV--TTAVDEKPCPVSNVL----RPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
            AA+ SI++KE L+RATA + RR NS +LM+NA HHR+DA+SSVVA++ + GAM G P+LDP+AGL V                                 +  G+ GV+    IRSR MG  +LVDL IQ+            A+  R  +L  +P VS+V+V   TA  +  CP+   +    R H E+E  VR+ + Q LRE+T V  V VHY     + DV   +   LRV E   +A+  RR L+    D+ +V V +DL
Sbjct:  246 AAVASILSKEILFRATARIGRRLNSQMLMANAWHHRSDALSSVVAVLGIAGAMLGLPVLDPIAGLLVAGMVSSMGLRIGIEAVMELTDTHDFEATQSVHRVATGIPGVQRAWQIRSRSMGGASLVDLAIQVEPKLTASSAHKVAEEVRMEVLNSVPRVSEVLVHVDTAPHDASCPLQTQVMQSARSHLEVEEQVRQELSQ-LRELTGVTSVLVHYLPAGLTVDVQATMADHLRVDELRGVAAVARRKLMQSAPDITAVRVSVDL 508          
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Match: A0A352RI22_9DELT (ZT_dimer domain-containing protein n=16 Tax=root TaxID=1 RepID=A0A352RI22_9DELT)

HSP 1 Score: 130 bits (327), Expect = 7.580e-31
Identity = 91/265 (34.34%), Postives = 137/265 (51.70%), Query Frame = 2
Query:   23 VSIVAKEALYRATAAVARRHNSSVLMSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAV----------------------------------MLGGVEGVRGFDSIRSRRMGPQTLVDLTI------------QIAQRARFAILKKLPMVSDVIVTTAVD---------EKPCPVSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVDPRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDL 652
            ++I  KE LY AT  VARR  S +L++NA HHR+DA+SSV ALV + GA  G PL+DP+AG+ V                                  +L G+EGV  +  +R+RRMGP  LVDL I            Q+A+R R  IL+KLP V++V+V    +         E P  +  ++RP  EIE DV++ +   + E+  +  +  HY     +  V + +D  +R+ +A  IAS  R + + +IKD+ + D+HL+L
Sbjct:  123 IAIAVKEVLYHATRMVARRTGSRILLANAWHHRSDAISSVAALVGIGGAQWGLPLMDPIAGVLVAGLIIKTGINIGYESIRELTDETAEEEVISELGQILSGIEGVDHYHEMRARRMGPHLLVDLHIEVDSMMSISAAHQVAERVRLGILEKLPAVNEVLVHVDAEDDFFEAEGTEDPQKIV-LMRPQSEIENDVKKAL-SVIPEIEGITHIYCHYLNQELTVQVNILLDVEMRISDAQKIASAAR-MKIEQIKDINAADLHLEL 384          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352028 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CQT4_9STRA5.040e-166100.00ZT_dimer domain-containing protein n=1 Tax=Tribone... [more]
D7G7A9_ECTSI3.190e-6248.86Cation efflux protein n=2 Tax=Ectocarpus siliculos... [more]
A0A7S2V756_9STRA9.970e-4342.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DFL3_HETAK9.130e-4240.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7U980_9STRA2.840e-3738.29Cation efflux protein n=1 Tax=Nannochloropsis gadi... [more]
A0A7S2RL19_9STRA1.130e-3540.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RMB7_9STRA7.910e-3540.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3D5HED6_9DELT5.530e-3435.71Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3... [more]
A0A7S4B4U6_CHRCT2.470e-3137.50Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A352RI22_9DELT7.580e-3134.34ZT_dimer domain-containing protein n=16 Tax=root T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:409955..413862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352028|estExt_Genemark1.C_Ctg_1060068
Descriptioncation transmembrane transporter activity
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0053@1|root,KOG1485@2759|Eukaryota
Evalue2.07e-52
Seed ortholog2880.D7G7A9
Hectar predicted targeting categorysignal peptide
TranscriptId352350
TrackFilteredModels1
ProteinId352028
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352028gene_9525Tribonema minus UTEX_B_3156 geneContig_106 409955..413862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352028Trimin1|352028|estExt_Genemark1.C_Ctg_1060068Tribonema minus UTEX_B_3156 polypeptideContig_106 410206..413765 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9525_6exon_9525_6Tribonema minus UTEX_B_3156 exonContig_106 409955..410559 -
exon_9525_5exon_9525_5Tribonema minus UTEX_B_3156 exonContig_106 410833..410973 -
exon_9525_4exon_9525_4Tribonema minus UTEX_B_3156 exonContig_106 411445..411489 -
exon_9525_3exon_9525_3Tribonema minus UTEX_B_3156 exonContig_106 412016..412108 -
exon_9525_2exon_9525_2Tribonema minus UTEX_B_3156 exonContig_106 413027..413117 -
exon_9525_1exon_9525_1Tribonema minus UTEX_B_3156 exonContig_106 413743..413862 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9525UTR3_9525Tribonema minus UTEX_B_3156 three_prime_UTRContig_106 409955..410205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9525CDS_9525Tribonema minus UTEX_B_3156 CDSContig_106 413743..413765 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9525UTR5_9525Tribonema minus UTEX_B_3156 five_prime_UTRContig_106 413766..413862 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9525 ID=mRNA_9525|Name=jgi.p|Trimin1|352028|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1095bp|location=Sequence derived from alignment at Contig_106:409955..413862- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTGGCCGGTCTGGCGGCGCTGGTGTCCATTGTGGCCAAGGAGGCCTTGT
ATAGGGCGACTGCCGCGGTGGCGCGGCGACACAACAGCAGCGTGCTCATG
TCCAATGCGCTGCACCACAGGACGGATGCGGTGTCCAGTGTGGTGGCCCT
GGTGGCTGTTGTGGGAGCCATGTGCGGGGCGCCGCTGCTTGACCCTTTAG
CTGGCCTGGCGGTGATGCTGGGAGGGGTGGAAGGCGTCCGTGGCTTTGAC
TCCATACGCTCCCGCCGCATGGGACCACAGACATTGGTGGACTTGACCAT
TCAGATTGCTCAGCGGGCCCGTTTTGCCATACTCAAGAAGCTGCCCATGG
TCAGCGATGTGATAGTGACAACAGCGGTGGATGAGAAGCCCTGTCCGGTG
TCCAATGTGCTCAGGCCACACGGCGAGATTGAGGGGGATGTGAGGCGGGT
TGTGAGGCAGGAGCTGAGGGAGGTCACGGACGTTCCCAAGGTGACGGTGC
ACTATACGGGCCTGAGCACATCCGCAGACGTATTTGTGCGCGTCGACCCA
CGCCTGCGCGTGCATGAAGCCATTGCCATAGCCTCACAAGTGCGCCGCGT
GCTGGTCAACCGCATCAAGGACCTGTGCTCCGTGGACGTCCATCTGGACC
TGGTGGAAACGTACATGGCAGTGGAGGCACGAGCGGGCACGGGGGGGTCT
TCTGACAGTTTTTACGGCAGCAGCAAGCTGCGGGCAAATCTGCTGAGCAA
CTTGCTGGACCGTGCATCGTCAGGAAGGAAGGGCGGCGCGGGTGGGGCAG
GGGACTGGGAGCAGTCGTCATGGGCAGACGACAAGCACACCTGATGCAAT
GATGACCCTCTTACGTTTTACTGGTTTTTTGTAGGGGGTATTGGTGCCGC
TGATGCTGGGTTTTACTGCAGGGGCACTCAGGGGGGTGTTTACGGCTTGG
CAGGGCTGCTGCTGGGTGTGTGGTCAAACAACAGAGTCAGCGGCTATAGG
TGTCATTGTGCGGGTTACATGGTGCTTGCGATGGCCATCAGCAAAACACA
AGTCATTGCATATTCACACCAGCCAAATAACAAATTTAATTTGTG
back to top

protein sequence of jgi.p|Trimin1|352028

>Trimin1|352028|estExt_Genemark1.C_Ctg_1060068 ID=Trimin1|352028|estExt_Genemark1.C_Ctg_1060068|Name=jgi.p|Trimin1|352028|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp
MSNALHHRTDAVSSVVALVAVVGAMCGAPLLDPLAGLAVMLGGVEGVRGF
DSIRSRRMGPQTLVDLTIQIAQRARFAILKKLPMVSDVIVTTAVDEKPCP
VSNVLRPHGEIEGDVRRVVRQELREVTDVPKVTVHYTGLSTSADVFVRVD
PRLRVHEAIAIASQVRRVLVNRIKDLCSVDVHLDLVETYMAVEARAGTGG
SSDSFYGSSKLRANLLSNLLDRASSGRKGGAGGAGDWEQSSWADDKHT*
back to top

mRNA from alignment at Contig_106:409955..413862-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9525 ID=mRNA_9525|Name=jgi.p|Trimin1|352028|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3908bp|location=Sequence derived from alignment at Contig_106:409955..413862- (Tribonema minus UTEX_B_3156 )
CTTGGCCGGTCTGGCGGCGCTGGTGTCCATTGTGGCCAAGGAGGCCTTGT ATAGGGCGACTGCCGCGGTGGCGCGGCGACACAACAGCAGCGTGCTCATG TCCAATGCGCTGCACCACAGGTATGTACATGCTACCAAGTACAGTATATG GCTTGCTTTGATTTGGCAGCCGTTACGTCATGTGACCCTCTTCCATATGT GTCTGGCCTTGTCTGAGTTGACAGCCGCTATGCTTGTGTTCCTCCTATAC TTTGAAGTATGCGTCAGGCCATGAAGTTGAAGTCTTGCATGTGGCGGCAA TTGCTTGCAGAAATGGTTAGCGTTGGCTGGAACTGTAGCTATGACCAGCA CGTCAGTTTGCCATGCTTGGACATCAGGCAGTGAGTCATATGGCTGAGGT GTGCTCCTTTGGAAAGGACATTGAAAAACACACACATGTTCCTTGCCAAG GTTTGCAGCACTGACTTGATCGCCTGCCCACCATGGGCCATGTGGCTTTC ACTGCTGCTAGGTTCATGTTCATGCCAACTGGAACCAGCAAGCAGATTTG TGTATCACTGGGGGAATGTGTATGCTACGCTGCTTCAATACGTGTGCGCC AGTCTGAGCTTTGACGCTTGTACTCTCAAAGCCTGCATGGACTCGTGCGC TCAGATGCGCAATCAACGACAGCAATGGCCATCTGCCCGTGCTGACCACT GTGACCACTGTGTGTTGATGCCACTGCCACCGATGCATCTCTCAGGACGG ATGCGGTGTCCAGTGTGGTGGCCCTGGTGGCTGTTGTGGGAGCCATGTGC GGGGCGCCGCTGCTTGACCCTTTAGCTGGCCTGGCGGTTGCTCTAATGAT ATTCTATACTGGACTTCAGGCAAGCGACTGCAACACTGCGTGGCCATGTT TGAGCATACCTGAGTTGCAGTGAAGGCGTTGTTGCATTCTTTGACACACC GTGCGTTGAATGCATGTTTGTGCTACTGGCAGATTGCTGCGCAAGGCATG GCTGTCTGCGAACAAGTATGTGTATCAGTGCACCGCTCCTAGATTCTTTG CGCTGCCGTGTCTTGCTGTGACACATATGTTGAGAGCCATTGCGTCATGT CAATGGCTTGACTACAGCACTGTTGTTGAAAGGTGTAATGCGTAGTTTTG ATGGTCCGGCTACAGCAGCCATACAGCTCTGCACCATTGCATACCATACT TGCTGACCATATGCTCTGCCTGCACACTATTGCAGGTTTGCCAAGATGCT GTCAAGCAGCTGACGGACACTGCTGATGAGGATGTCAGGTTTAGGGTAGC TGAGGTGAGCACATTCTGTTGAGCAACGAACTGGTTTTGCAATCAAGCAA CAATTGCACAGAAACATTTGTATTTTGGCATAATACTGCCTCATTGGCCA TAAGGTCGTGGCCCTCTGGAAACGCATGCACTGGTTTGCCGGTCATTCTT ATTACATAGTACAGTTCTGGCAGACATCTCCAGTATGCGTGCGCACGACC GTTCATGCAGTTATTTGATGCTGCAATTTGTCAACGGTCATCGCGGAAAC TGTCACCAATGCATTAGCTGTACCTGTAGGGCCTGTCAACATGAATATCA GTAATGTTGGCTCTGCACAAGACCTTCATGATGTGATCCGTGTGTGAGTC ACCACAAATTGTTATGGTTGTACTTCCTCACTGATGGGTGGCTGTTGATG CGCTACAAATGAGTTAATGATCCTGATCCTGTGTGGCCTCTTGCTGTGCA ACAGGTGATGCTGGGAGGGGTGGAAGGCGTCCGTGGCTTTGACTCCATAC GCTCCCGCCGCATGGGACCACAGACATTGGTGGACTTGACCATTCAGGTC GACAGTGACATCTCCGCCAGCGCAGCACAGCAGGCAAGGACTGAGCAGCT TACATTGGCTACAAGGTGGCGCGTGTGCTTGCTGATGAACATGCTGGGTC ATACCTGATGCTATCAAGTACTCGATTGAGCTGCAGGTGCCCTTTCTTTT GCATCTGACACGTGGCATATGAGACAATGCGAGCTGCCTACCTGAAAGCA GTTTGTGACACAGTCACTCATTTGGTAGGTACTGTGCATTGTGGCTGGCA TACAGTACAATACAGCGTCCCATGCACCTCTGTTGCCATGAGGGATACTG GGGCGAGAGACATGGCATTGTCATGACATGGCCACGACGGACACTGTTGA CCATGATGAGGTCAATAACTGGTCGCTGCCAGCACGTCACATAGAGCCTG AGAGGGCCTACTGCTACTGGTATGCCTGAAAAACAGGAATTTGTCTTTGG CGATACAAGGTCTTTCAGCAACTGACTGACGGCGACATGCTTGTGTGCGC ACTTCGTGTGTGTTGGTGCACAGATTGCTCAGCGGGCCCGTTTTGCCATA CTCAAGAAGCTGCCCATGGTGAGTGCACACTTGCACAGAATGAAACAACG CTATGGCTATGGATAATCGCAGGCTCTCCTGATGGGAGCAGTGCGGCTGC ACTTGCCAGGACAGATGAAGACACCCAGTTGTCAATGATCTTTGTTGGCT TCATTGTTTCTCTCCTTTCATAAATGCACACATCACCGCCCAACATGGTG CACTTCAAGCCATGCACGCATGACACCTTGAAGCTGTGAGCTAGAAGAGA TGCATGCCTTTGCGCATGCCTCGTTTGTATTGTTGCATACACATCAATGA AGGCAACAGTGCTGGTTGGCATTCGTCAGGCGGTCATCGCAGCACATGAC AGTACCACCGCAGTGCGGTGCAAGCACACCTCACAACCAGCGCTAGCCCC TTTGCTGCTGCTGCACGCATCGATTCAATTTTTTGAATGTGCCGTCTATC TCACGTGATCCATGCTGCTGCGTGTTGTTTGGCCATTAGGTCAGCGATGT GATAGTGACAACAGCGGTGGATGAGAAGCCCTGTCCGGTGTCCAATGTGC TCAGGCCACACGGCGAGATTGAGGGGGATGTGAGGCGGGTTGTGAGGCAG GAGCTGAGGGAGGTCACGGACGTTCCCAAGGTATAGAACACAGCACAGCT GCTGCCATTGCTGGTATTTGCAATCCACATTTTGTCGCGGCAACCGTTTC ATAGCAATTGCGTGCTATGGGCCAAATTGGCTCATGCCTGCCTAATGGCA TGTGCACTGAAAGAAAGAGTTTGTGAGATCGCATCACTCCGTATTGCATG CTCTTGGTCATGGTACAACGGTGCACTCAGCATCCCAGCATGCTGAAAAA ACTCTTTAGCATGCAGTTTACGACATGGCCGCCTTTTGCTGCTGCTGCTC CAGGTGACGGTGCACTATACGGGCCTGAGCACATCCGCAGACGTATTTGT GCGCGTCGACCCACGCCTGCGCGTGCATGAAGCCATTGCCATAGCCTCAC AAGTGCGCCGCGTGCTGGTCAACCGCATCAAGGACCTGTGCTCCGTGGAC GTCCATCTGGACCTGGTGGAAACGTACATGGCAGTGGAGGCACGAGCGGG CACGGGGGGGTCTTCTGACAGTTTTTACGGCAGCAGCAAGCTGCGGGCAA ATCTGCTGAGCAACTTGCTGGACCGTGCATCGTCAGGAAGGAAGGGCGGC GCGGGTGGGGCAGGGGACTGGGAGCAGTCGTCATGGGCAGACGACAAGCA CACCTGATGCAATGATGACCCTCTTACGTTTTACTGGTTTTTTGTAGGGG GTATTGGTGCCGCTGATGCTGGGTTTTACTGCAGGGGCACTCAGGGGGGT GTTTACGGCTTGGCAGGGCTGCTGCTGGGTGTGTGGTCAAACAACAGAGT CAGCGGCTATAGGTGTCATTGTGCGGGTTACATGGTGCTTGCGATGGCCA TCAGCAAAACACAAGTCATTGCATATTCACACCAGCCAAATAACAAATTT AATTTGTG
back to top

Coding sequence (CDS) from alignment at Contig_106:409955..413862-

>mRNA_9525 ID=mRNA_9525|Name=jgi.p|Trimin1|352028|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_106:409955..413862- (Tribonema minus UTEX_B_3156 )
ATGTCCAATGCGCTGCACCACAGGACGGATGCGGTGTCCAGTGTGGTGGC
CCTGGTGGCTGTTGTGGGAGCCATGTGCGGGGCGCCGCTGCTTGACCCTT
TAGCTGGCCTGGCGGTGATGCTGGGAGGGGTGGAAGGCGTCCGTGGCTTT
GACTCCATACGCTCCCGCCGCATGGGACCACAGACATTGGTGGACTTGAC
CATTCAGATTGCTCAGCGGGCCCGTTTTGCCATACTCAAGAAGCTGCCCA
TGGTCAGCGATGTGATAGTGACAACAGCGGTGGATGAGAAGCCCTGTCCG
GTGTCCAATGTGCTCAGGCCACACGGCGAGATTGAGGGGGATGTGAGGCG
GGTTGTGAGGCAGGAGCTGAGGGAGGTCACGGACGTTCCCAAGGTGACGG
TGCACTATACGGGCCTGAGCACATCCGCAGACGTATTTGTGCGCGTCGAC
CCACGCCTGCGCGTGCATGAAGCCATTGCCATAGCCTCACAAGTGCGCCG
CGTGCTGGTCAACCGCATCAAGGACCTGTGCTCCGTGGACGTCCATCTGG
ACCTGGTGGAAACGTACATGGCAGTGGAGGCACGAGCGGGCACGGGGGGG
TCTTCTGACAGTTTTTACGGCAGCAGCAAGCTGCGGGCAAATCTGCTGAG
CAACTTGCTGGACCGTGCATCGTCAGGAAGGAAGGGCGGCGCGGGTGGGG
CAGGGGACTGGGAGCAGTCGTCATGGGCAGACGACAAGCACACCTGA
back to top