mRNA_9516 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135109
Unique NamemRNA_9516
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135109 vs. uniprot
Match: A0A835ZD53_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD53_9STRA)

HSP 1 Score: 307 bits (786), Expect = 2.040e-105
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 
Query:    1 RDPACGYDFIRGKNEEAGGNEGDFLSRMDAQTAHSRRKLEERRAEEAYNDRQDKKSCPQCGAVQSYDEYAKKKTKCAGCGATYSSATAWSRGTWNARNAAVAARSNQRMAQLQQRVDAETRGLSALGQQQQVRRFRQAELLKQRAARQPFIDRMEADVGKRER 489
            RDPACGYDFIRGKNEEAGGNEGDFLSRMDAQTAHSRRKLEERRAEEAYNDRQDKKSCPQCGAVQSYDEYAKKKTKCAGCGATYSSATAWSRGTWNARNAAVAARSNQRMAQLQQRVDAETRGLSALGQQQQVRRFRQAELLKQRAARQPFIDRMEADVGKRER
Sbjct:    1 RDPACGYDFIRGKNEEAGGNEGDFLSRMDAQTAHSRRKLEERRAEEAYNDRQDKKSCPQCGAVQSYDEYAKKKTKCAGCGATYSSATAWSRGTWNARNAAVAARSNQRMAQLQQRVDAETRGLSALGQQQQVRRFRQAELLKQRAARQPFIDRMEADVGKRER 163
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BLAST of jgi.p|Trimin1|135109 vs. uniprot
Match: A0A7S4A7J4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7J4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.360e-10
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   10 ACGYDFIRGKNEEAGGNEGDFLSRMDAQTAHSRRKLEERRAEEAYNDRQDKKSCPQCGAVQSYDEYAKKKTKCAGC 237
            ACGY+F R   ++A G+E  F+ R+     HSRR  EE   ++ Y+ R DKK CP+CGAVQSYDEY ++ +K   C
Sbjct:  276 ACGYEFARDSGKKADGDE--FVERLARSARHSRRAKEEAIGKQEYSYRLDKKQCPKCGAVQSYDEYVERFSKGRNC 349
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BLAST of jgi.p|Trimin1|135109 vs. uniprot
Match: G4YKZ3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YKZ3_PHYSP)

HSP 1 Score: 58.5 bits (140), Expect = 8.350e-8
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   82 MDAQTAHSRRKLEERRAEEAYNDRQDKKSCPQCGAVQSYDEYAKKKTKCAGCGATYSSATAW 267
            M+A   + ++KLE  R E  YN R DKKSCP+CGA QSY E+  KK KC  CG  +    AW
Sbjct:    1 MEAAERNRQKKLELSRGENDYNARLDKKSCPKCGAPQSYSEFRDKKKKCQMCGVEFRFVNAW 62
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BLAST of jgi.p|Trimin1|135109 vs. uniprot
Match: F0Y7E4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7E4_AURAN)

HSP 1 Score: 53.1 bits (126), Expect = 4.310e-5
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:   34 GKNEEAGGNEGDFLSRMDAQTAHSRRKLEERRAEEAYNDRQDKKSCPQCGAVQSYDEYAKKKTKCAGCGATY 249
            G+  +A     +F+ R DA T   RR+ E    +  Y+ + DKK CP CGAVQSYDE  +K+ +C  C   Y
Sbjct: 1340 GEGPDAEAKTDNFIQRQDAWTRKVRREKEAAIGKANYDVKLDKKVCPSCGAVQSYDEVEEKRDRCVECAVAY 1411
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135109 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZD53_9STRA2.040e-105100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4A7J4_9STRA2.360e-1047.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
G4YKZ3_PHYSP8.350e-850.00Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
F0Y7E4_AURAN4.310e-540.28Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:344900..345388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135109|gw1.106.7.1
Max annot lvl2759|Eukaryota
EggNOG OGs2AZKF@1|root,2S063@2759|Eukaryota
Evalue8.53e-16
Seed ortholog157072.XP_008868060.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_004800.1
TranscriptId135431
TrackFilteredModels1
ProteinId135109
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135109gene_9516Tribonema minus UTEX_B_3156 geneContig_106 344900..345388 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9516_1exon_9516_1Tribonema minus UTEX_B_3156 exonContig_106 344900..345388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9516CDS_9516Tribonema minus UTEX_B_3156 CDSContig_106 344900..345388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135109Trimin1|135109|gw1.106.7.1Tribonema minus UTEX_B_3156 polypeptideContig_106 344900..345388 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9516 ID=mRNA_9516|Name=jgi.p|Trimin1|135109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_106:344900..345388+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAGACCCAGCATGCGGATATGATTTCATTCGCGGCAAGAATGAGGAAGC
TGGAGGAAATGAGGGCGACTTCTTGTCGCGCATGGACGCACAGACAGCCC
ACAGCCGGCGTAAGCTGGAGGAGAGGCGAGCAGAAGAGGCTTACAACGAC
AGGCAAGACAAGAAGTCTTGCCCGCAGTGCGGTGCTGTCCAGAGCTATGA
TGAGTATGCAAAGAAGAAGACAAAGTGTGCCGGCTGTGGCGCTACGTACT
CATCAGCCACCGCGTGGAGTCGCGGTACGTGGAACGCCCGCAATGCGGCA
GTGGCGGCGCGCAGCAACCAGCGCATGGCGCAGTTGCAGCAGCGAGTCGA
TGCTGAGACAAGGGGCTTGTCGGCACTGGGACAGCAGCAGCAGGTAAGGC
GCTTCCGGCAGGCAGAGCTGCTGAAGCAGCGCGCTGCACGGCAACCGTTT
ATCGACCGCATGGAGGCAGATGTAGGCAAGAGGGAGAGG
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protein sequence of jgi.p|Trimin1|135109

>Trimin1|135109|gw1.106.7.1 ID=Trimin1|135109|gw1.106.7.1|Name=jgi.p|Trimin1|135109|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
RDPACGYDFIRGKNEEAGGNEGDFLSRMDAQTAHSRRKLEERRAEEAYND
RQDKKSCPQCGAVQSYDEYAKKKTKCAGCGATYSSATAWSRGTWNARNAA
VAARSNQRMAQLQQRVDAETRGLSALGQQQQVRRFRQAELLKQRAARQPF
IDRMEADVGKRER
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mRNA from alignment at Contig_106:344900..345388+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9516 ID=mRNA_9516|Name=jgi.p|Trimin1|135109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_106:344900..345388+ (Tribonema minus UTEX_B_3156 )
AGAGACCCAGCATGCGGATATGATTTCATTCGCGGCAAGAATGAGGAAGC
TGGAGGAAATGAGGGCGACTTCTTGTCGCGCATGGACGCACAGACAGCCC
ACAGCCGGCGTAAGCTGGAGGAGAGGCGAGCAGAAGAGGCTTACAACGAC
AGGCAAGACAAGAAGTCTTGCCCGCAGTGCGGTGCTGTCCAGAGCTATGA
TGAGTATGCAAAGAAGAAGACAAAGTGTGCCGGCTGTGGCGCTACGTACT
CATCAGCCACCGCGTGGAGTCGCGGTACGTGGAACGCCCGCAATGCGGCA
GTGGCGGCGCGCAGCAACCAGCGCATGGCGCAGTTGCAGCAGCGAGTCGA
TGCTGAGACAAGGGGCTTGTCGGCACTGGGACAGCAGCAGCAGGTAAGGC
GCTTCCGGCAGGCAGAGCTGCTGAAGCAGCGCGCTGCACGGCAACCGTTT
ATCGACCGCATGGAGGCAGATGTAGGCAAGAGGGAGAGG
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Coding sequence (CDS) from alignment at Contig_106:344900..345388+

>mRNA_9516 ID=mRNA_9516|Name=jgi.p|Trimin1|135109|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_106:344900..345388+ (Tribonema minus UTEX_B_3156 )
AGAGACCCAGCATGCGGATATGATTTCATTCGCGGCAAGAATGAGGAAGC
TGGAGGAAATGAGGGCGACTTCTTGTCGCGCATGGACGCACAGACAGCCC
ACAGCCGGCGTAAGCTGGAGGAGAGGCGAGCAGAAGAGGCTTACAACGAC
AGGCAAGACAAGAAGTCTTGCCCGCAGTGCGGTGCTGTCCAGAGCTATGA
TGAGTATGCAAAGAAGAAGACAAAGTGTGCCGGCTGTGGCGCTACGTACT
CATCAGCCACCGCGTGGAGTCGCGGTACGTGGAACGCCCGCAATGCGGCA
GTGGCGGCGCGCAGCAACCAGCGCATGGCGCAGTTGCAGCAGCGAGTCGA
TGCTGAGACAAGGGGCTTGTCGGCACTGGGACAGCAGCAGCAGGTAAGGC
GCTTCCGGCAGGCAGAGCTGCTGAAGCAGCGCGCTGCACGGCAACCGTTT
ATCGACCGCATGGAGGCAGATGTAGGCAAGAGGGAGAGG
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