mRNA_9467 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173768
Unique NamemRNA_9467
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: A0A835ZFY7_9STRA (Histone H4 (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFY7_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.520e-60
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 MPPRTGGHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            MPPRTGGHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG
Sbjct:    1 MPPRTGGHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 95
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: A0A669DB70_ORENI (Histone H4 n=5 Tax=Clupeocephala TaxID=186625 RepID=A0A669DB70_ORENI)

HSP 1 Score: 142 bits (359), Expect = 1.670e-42
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:   10 RTGGHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            ++GG   RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR GR LYGFG
Sbjct:    1 KSGGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 92
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: A0A836CBN9_9STRA (Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.880e-42
Identity = 74/97 (76.29%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 MPPRTGGHVI--RHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            MPPR     +  RH K LRDNI G+T  AIRRLCRRGGVKRIS L+YEE RGVLKVFLE +V DAVTYTEHA+RKTVTSLDVVLALKR GRP+YGFG
Sbjct:    1 MPPRRAPRTLPKRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 97
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: A0A836CMT6_9STRA (Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.190e-42
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:   19 GHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            G   RHRKVLRDNI G+T AAIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RD+VTYTEHARRKTVT++DVVLALKR GR LYGFG
Sbjct:   14 GGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: A0A7L2ACY7_9GRUI (Histone H4 (Fragment) n=2 Tax=Amniota TaxID=32524 RepID=A0A7L2ACY7_9GRUI)

HSP 1 Score: 142 bits (358), Expect = 3.200e-42
Identity = 71/89 (79.78%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:   19 GHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            G   RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR GRPLYGFG
Sbjct:   14 GGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRPLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: A0A673GAT9_9TELE (Histone H4 n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673GAT9_9TELE)

HSP 1 Score: 142 bits (357), Expect = 3.360e-42
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:   10 RTGGHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            RTG  + RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR GR LYGFG
Sbjct:    1 RTGLGLDRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 92
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: A0A3B4USK2_SERDU (Histone H4 n=8 Tax=Clupeocephala TaxID=186625 RepID=A0A3B4USK2_SERDU)

HSP 1 Score: 142 bits (357), Expect = 3.680e-42
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:   19 GHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            G + RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR GR LYGFG
Sbjct:    7 GEITRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 95
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: A0A3B5RBQ9_XIPMA (Histone H4 n=6 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A3B5RBQ9_XIPMA)

HSP 1 Score: 141 bits (356), Expect = 4.500e-42
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:   16 GGHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            GG   RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR GR LYGFG
Sbjct:    1 GGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 90
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: A0A3P8W8U9_CYNSE (Histone H4 n=23 Tax=Clupeocephala TaxID=186625 RepID=A0A3P8W8U9_CYNSE)

HSP 1 Score: 141 bits (356), Expect = 4.770e-42
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:   10 RTGGHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            RTG    RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR GR LYGFG
Sbjct:    1 RTGIGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 92
[Close]
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Match: B4FNQ5_MAIZE (Histone H4 n=2 Tax=Eukaryota TaxID=2759 RepID=B4FNQ5_MAIZE)

HSP 1 Score: 141 bits (356), Expect = 6.460e-42
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:   19 GHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 285
            G   RHRKVLRDNI G+T  AIRRL RRGGVKRIS+L+YEETRGVLK+FLE ++RDAVTYTEHARRKTVT++DVV ALKR GR LYGFG
Sbjct:   14 GGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISRLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173768 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFY7_9STRA2.520e-60100.00Histone H4 (Fragment) n=2 Tax=Tribonema minus TaxI... [more]
A0A669DB70_ORENI1.670e-4277.17Histone H4 n=5 Tax=Clupeocephala TaxID=186625 RepI... [more]
A0A836CBN9_9STRA1.880e-4276.29Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
A0A836CMT6_9STRA2.190e-4280.90Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
A0A7L2ACY7_9GRUI3.200e-4279.78Histone H4 (Fragment) n=2 Tax=Amniota TaxID=32524 ... [more]
A0A673GAT9_9TELE3.360e-4278.26Histone H4 n=1 Tax=Sinocyclocheilus rhinocerous Ta... [more]
A0A3B4USK2_SERDU3.680e-4278.65Histone H4 n=8 Tax=Clupeocephala TaxID=186625 RepI... [more]
A0A3B5RBQ9_XIPMA4.500e-4278.89Histone H4 n=6 Tax=Osteoglossocephalai TaxID=14893... [more]
A0A3P8W8U9_CYNSE4.770e-4278.26Histone H4 n=23 Tax=Clupeocephala TaxID=186625 Rep... [more]
B4FNQ5_MAIZE6.460e-4278.65Histone H4 n=2 Tax=Eukaryota TaxID=2759 RepID=B4FN... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:47634..47918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173768|e_gw1.106.64.1
BRITEko00000,ko00001,ko03036,ko04147
KEGG Pathwayko05034,ko05202,ko05203,ko05322,map05034,map05202,map05203,map05322
KEGG koko:K11253,ko:K11254
Preferred nameH3F3C
DescriptionHistone cluster 1
COG categoryB
Max annot lvl33208|Metazoa
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota,KOG3467@2759|Eukaryota,39ZTV@33154|Opisthokonta,3BPDH@33208|Metazoa,3D6BK@33213|Bilateria,48E1W@7711|Chordata,49B7M@7742|Vertebrata,3JEM2@40674|Mammalia,35T38@314146|Euarchontoglires,4MJEA@9443|Primates,36BI3@314294|Cercopithecoidea
Evalue4.77e-40
Seed ortholog61622.XP_010372995.1
Hectar predicted targeting categoryother localisation
TranscriptId174090
TrackFilteredModels1
ProteinId173768
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173768gene_9467Tribonema minus UTEX_B_3156 geneContig_106 47634..47918 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9467_1exon_9467_1Tribonema minus UTEX_B_3156 exonContig_106 47634..47918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9467CDS_9467Tribonema minus UTEX_B_3156 CDSContig_106 47634..47918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173768Trimin1|173768|e_gw1.106.64.1Tribonema minus UTEX_B_3156 polypeptideContig_106 47634..47918 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9467 ID=mRNA_9467|Name=jgi.p|Trimin1|173768|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_106:47634..47918- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGCGGACCGGGGGCCATGTCATTCGCCACCGAAAGGTGCTGCG
TGACAACATCCTCGGAGTCACGAATGCTGCCATCCGACGCCTCTGTCGCA
GGGGCGGCGTCAAGCGCATATCGAAACTCGTGTACGAGGAGACTCGCGGC
GTCCTCAAAGTGTTTCTGGAAGGCATCGTGCGCGACGCCGTCACTTACAC
AGAGCACGCGCGACGCAAGACCGTCACTTCGCTCGACGTGGTGCTCGCGC
TAAAACGGCTCGGTCGGCCGCTGTATGGGTTCGGC
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protein sequence of jgi.p|Trimin1|173768

>Trimin1|173768|e_gw1.106.64.1 ID=Trimin1|173768|e_gw1.106.64.1|Name=jgi.p|Trimin1|173768|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
MPPRTGGHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRG
VLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG
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mRNA from alignment at Contig_106:47634..47918-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9467 ID=mRNA_9467|Name=jgi.p|Trimin1|173768|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_106:47634..47918- (Tribonema minus UTEX_B_3156 )
ATGCCGCCGCGGACCGGGGGCCATGTCATTCGCCACCGAAAGGTGCTGCG
TGACAACATCCTCGGAGTCACGAATGCTGCCATCCGACGCCTCTGTCGCA
GGGGCGGCGTCAAGCGCATATCGAAACTCGTGTACGAGGAGACTCGCGGC
GTCCTCAAAGTGTTTCTGGAAGGCATCGTGCGCGACGCCGTCACTTACAC
AGAGCACGCGCGACGCAAGACCGTCACTTCGCTCGACGTGGTGCTCGCGC
TAAAACGGCTCGGTCGGCCGCTGTATGGGTTCGGC
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Coding sequence (CDS) from alignment at Contig_106:47634..47918-

>mRNA_9467 ID=mRNA_9467|Name=jgi.p|Trimin1|173768|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_106:47634..47918- (Tribonema minus UTEX_B_3156 )
ATGCCGCCGCGGACCGGGGGCCATGTCATTCGCCACCGAAAGGTGCTGCG
TGACAACATCCTCGGAGTCACGAATGCTGCCATCCGACGCCTCTGTCGCA
GGGGCGGCGTCAAGCGCATATCGAAACTCGTGTACGAGGAGACTCGCGGC
GTCCTCAAAGTGTTTCTGGAAGGCATCGTGCGCGACGCCGTCACTTACAC
AGAGCACGCGCGACGCAAGACCGTCACTTCGCTCGACGTGGTGCTCGCGC
TAAAACGGCTCGGTCGGCCGCTGTATGGGTTCGGC
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