mRNA_9447 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173773
Unique NamemRNA_9447
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: A0A835YWY0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY0_9STRA)

HSP 1 Score: 573 bits (1477), Expect = 8.630e-207
Identity = 278/282 (98.58%), Postives = 281/282 (99.65%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVYESASEKYQRLQRTQQDSRPMSEATKSRKGGNTIIVRRQG 846
            MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIV HYRADANLNFKYGAPALWRYH+EVYESAS+KYQRLQRTQQDSRPMSEAT+SRKGGNTIIVRRQG
Sbjct:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVRRQG 282          
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: A0A835Z4P3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P3_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 7.710e-138
Identity = 187/286 (65.38%), Postives = 236/286 (82.52%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVYESASEKYQRLQRTQQ------DSRPMSEATKSRKGGNTIIVRR 840
            M FN  KFD  E++RSPACVAI GKRG+GKS+LIKD+LYHL++A VPRC+CFSATE+AN +F  F+P VFVH L+ DTL  +W+AQKEL +QK VGQL P TDTRL +++DDCA+ K +MKSA L+EIFMNGRHHG++FIVTLQYLIDLNV+MRSNVD +F+LKEL+ KNQERIY+ESCGFLP F  FQDLFMAST+NYEAFVVN RCKS+D Q+I+ +Y+AD  LNF++G  ++WR+H  VYESA+++Y R+QR QQ      DSRP ++  +  +GG+TI+VRR
Sbjct:    1 MAFNLTKFDMSEVSRSPACVAICGKRGSGKSVLIKDILYHLHVARVPRCVCFSATEDANQFFSGFVPDVFVHALNHDTLSNMWQAQKELAMQKAVGQLPPGTDTRLAIILDDCAFDKTVMKSAVLKEIFMNGRHHGVFFIVTLQYLIDLNVSMRSNVDVFFFLKELNLKNQERIYHESCGFLPCFGAFQDLFMASTSNYEAFVVNGRCKSSDAQQIIHYYKADPTLNFRFGPASIWRFHSTVYESATDRYVRMQREQQEPRAVVDSRPSNKGRRGARGGSTIVVRR 286          
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: A0A836CRE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRE2_9STRA)

HSP 1 Score: 303 bits (775), Expect = 3.010e-100
Identity = 149/282 (52.84%), Postives = 193/282 (68.44%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVYESASEKYQR----LQRTQQDSRPMSEATKSRKGGNTIIV 834
            M+FNF++FDP+E+++ P C+AIVG RGTGKS+L+KD+LYH+N AG PRC+ FS TE ANSYF  F+P VFVHP+D DTL  VW+ QKELVL+K  G L   T+T LVLV+DDCA++++                          YLIDLNVAMRSNVD +F+LKEL+  N+E+IY E+CGFLP++  F+ LF  +TA+YE FVVNSRC S++P+ IV HY+ADA L ++YG P LWRYH  VYES  ++YQR    L+R     +       SR GG T  V
Sbjct:    1 MSFNFSRFDPREISKRPVCIAIVGMRGTGKSVLLKDILYHINEAGAPRCVVFSGTEGANSYFSEFVPGVFVHPMDQDTLHSVWERQKELVLKKAAGGLPASTNTSLVLVLDDCAFNRK--------------------------YLIDLNVAMRSNVDIYFFLKELNRMNREKIYKETCGFLPNYHVFEQLFNDATADYETFVVNSRCTSSNPEDIVHHYKADAGLQYRYGPPCLWRYHHSVYESPQQRYQRQQEALRRDGGGKKSSGTGGLSRAGGKTETV 256          
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: A0A835Z4N1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N1_9STRA)

HSP 1 Score: 240 bits (613), Expect = 2.360e-75
Identity = 117/273 (42.86%), Postives = 176/273 (64.47%), Query Frame = 1
Query:   19 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVYESASEKYQRLQRTQQDSRPMSEATKSRKGGNTIIV 834
            KFDP ++ +      +  KRG+GKS L KD+LY L+  G PRC  FS TE AN +F  F+P VFVH PLD +TL  +W  QKE++L++R G L+ + DTR+++V+DDC++ K+   S  +RE+  NGRH+ +  I+TLQYL+DL  AMRSNVD  F+ ++    N+ER+Y +  GF P + TF+ +F A TANYE   V++   S D   IV +Y+A+A ++FK+G P+LW++H++++ S  ++Y   Q+    S   +  TK    GN+ I 
Sbjct:   12 KFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEA-VDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKV--SGNSSIT 281          
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: A0A836CN20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN20_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.850e-72
Identity = 114/274 (41.61%), Postives = 172/274 (62.77%), Query Frame = 1
Query:   19 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVYESASEKYQRLQRTQQDSRPMSEATKSRKGGNTIIVR 837
            +FD   + R    + + GKRGTGKS L KD++YHL+ AG PRC  FS TE AN +F TF+P VF+H P D + L  + K QK+L++++++GQ+  D DTRL++V+DDCAY K+++ S  +REI MNGRH+ I  +VTLQYL+D   ++R+NVD   +LK+    N+ERI+   CG    +  F+ +F + TAN+E   V++   S D + IV +Y+A  +  FK+G  +LWR+H++VY S  +++   Q+           TK    G   +VR
Sbjct:   15 RFDISMLARKNFTMTLTGKRGTGKSYLTKDIMYHLHKAGFPRCCVFSQTESANGFFSTFVPGVFIHSPFDLNVLANILKQQKDLIMKQKLGQIPADQDTRLLIVLDDCAYDKKILSSPIIREIMMNGRHYFISLVVTLQYLVDFAPSLRANVDVALFLKDNIKGNRERIWKHFCGMFSDYKVFEAVFESCTANFECLCVDNTISSTDNEDIVSYYKAGEH-EFKFGNRSLWRFHDKVYLSEEDEFVMRQQMAVQQAVQQSVTKVTSSGLITVVR 287          
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: A0A835Z5I5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I5_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.130e-70
Identity = 110/274 (40.15%), Postives = 176/274 (64.23%), Query Frame = 1
Query:   19 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVYESASEKYQRLQRTQQDSRPMSEATKSRKGGNTIIVR 837
            +FD  ++T+    + + GKRG+GKS L KD+++HL+ A  PRC  FS TE AN +F  F+P +F+H P D + L  + K QK+L++++++GQ+  D DTRL+LV+DDCAY ++++ S  +REI MNGRH+ I  IVTLQYL+DL  ++R+NVD   +LK+    N+ER++    GF  +F  F+ +F + TAN+E F V++   S   + IV +Y+A ++ +F++G P+LW++H+ VY S  +++   Q+           TK    G   +VR
Sbjct:   13 RFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKA-SDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVR 285          
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: C7U0C4_9PHYC (Uncharacterized protein n=9 Tax=root TaxID=1 RepID=C7U0C4_9PHYC)

HSP 1 Score: 180 bits (457), Expect = 3.620e-52
Identity = 93/244 (38.11%), Postives = 142/244 (58.20%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVY 729
            M     KF P+ M+    CV  +GKR TGKS L+KD++YH     +P  I  S TEE N ++G F+P +FV+   D D ++RV   Q+++V  K     N        +++DDC Y  + +K   +R+ FMNGRH+ I+F++T+QY++DL  A+R+NVD  F L+E   +N+E++Y    G  PSF  F  +  A T NYE  V+++  KSN     V  Y+A     F+ G+P LW+ H+++Y
Sbjct:    1 MNLQLRKFKPEAMSDDRVCV-FIGKRNTGKSTLVKDIMYHKK--HIPAGIVLSGTEEGNHFYGEFIPDLFVYGEYDRDAIERVISRQRKIVGTKGKNPYNG-----AFMLLDDCMYDSKFLKDTCIRQCFMNGRHYNIFFMLTMQYVMDLPPALRANVDYVFILRENIIQNREKLYKSFFGIFPSFDMFSKVMDACTENYECLVLDNTVKSNKITDCVFWYKATVRKGFRVGSPNLWQLHKKMY 236          
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: A0A2N9QVV5_9PHYC (Uncharacterized protein n=1 Tax=Dishui lake phycodnavirus 1 TaxID=2079134 RepID=A0A2N9QVV5_9PHYC)

HSP 1 Score: 177 bits (450), Expect = 3.720e-51
Identity = 92/244 (37.70%), Postives = 140/244 (57.38%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVY 729
            M     +F+PK M     CV  VGKR TGKS L+KD++YH     +P  +  S TEE NS+FG F+P +FV+   D + L+RV   QK ++ + +             +V+DDC Y+   +K   +R+ FMNGRH  ++F +TLQY +DL  ++R+N D  F L+E    N+ER++    G +PSF  F  +  A+T NYE  V+++  KSN     + +Y+AD   NF+ G+P  W  H+++Y
Sbjct:    3 MNLQLKRFNPKTMPDDAVCV-FVGKRRTGKSQLLKDMMYHKR--HIPAGVVLSGTEEGNSFFGAFVPDLFVYGDYDKEALERVVARQKAMIAKNKCQPA--------FVVLDDCMYNPSFLKDKIIRQCFMNGRHWKLWFALTLQYSMDLPPSLRANCDYVFVLRENVLSNRERLWKNFFGIVPSFDMFCKILDATTENYECLVLDNTSKSNKLTDCIFYYKADLRKNFRVGSPKFWNIHKKMY 235          
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: A0A0P0YND4_9PHYC (Putative VV A32 virion packaging ATPase n=1 Tax=Yellowstone lake phycodnavirus 2 TaxID=1586714 RepID=A0A0P0YND4_9PHYC)

HSP 1 Score: 177 bits (450), Expect = 4.170e-51
Identity = 87/244 (35.66%), Postives = 141/244 (57.79%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVY 729
            M+    +FDP +M     CV  +GKRGTGKS L+ D+L+H     +P  I  S TE+ N ++  F+P +FV+   + D ++++ + Q+++  +     L P     + ++MDDC Y +  M+   +R +FMNGRH  I+F++T QY++D+   +RSN D  F L++   +N+E +Y    G  P+F  F  +  A T NYE  V+++ CK+N  Q +V  Y+A    NFK G P+ W+YH+  Y
Sbjct:    1 MSVQLKRFDPTKMRNDRVCV-FIGKRGTGKSTLVTDILWHKR--AIPAGIAMSGTEDGNGHYKQFIPDLFVYGDYNKDAIEKIMERQRKIAARVGKEALPP-----VFILMDDCMYDRAFMRDTVMRSLFMNGRHWNIFFMMTTQYVMDMTPMIRSNTDYVFVLRDNVKQNRENLYKCFFGMFPNFDVFCQVMDACTENYECLVLDTTCKTNKIQDMVFWYKAPIRKNFKVGGPSFWQYHQRHY 236          
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Match: Q6XM75_9PHYC (FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM75_9PHYC)

HSP 1 Score: 178 bits (451), Expect = 8.590e-51
Identity = 90/257 (35.02%), Postives = 147/257 (57.20%), Query Frame = 1
Query:    4 TFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHP--LDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVYESASEKYQRLQRT 768
            T   + F+ K          ++GK+ TGKS LIKD+LY+++   VPR   FS TEE+N ++  F+P +F+    +  + L ++ ++QK++ +QK++G+   D D+R+V+V+DD  Y K  +K   LR+IFMNGRHH I  IV  QY +DL + +R+N D  F LK+ +  + + ++    G       FQ +  A TA+Y+  V+++   S +   +   Y+A     +K+G P LW YH   Y S  ++YQ  Q+T
Sbjct:    5 TIKLSAFNAKAACSKHFNAVVIGKKHTGKSTLIKDILYNVHKQKVPRICVFSGTEESNGFYREFIPDLFIFDDSMVEEKLTQIVESQKKIGMQKQLGECGDDVDSRIVVVLDDVGYKKNTLKCEILRQIFMNGRHHQISLIVACQYCMDLAIDLRTNADYVFVLKQNNMNSIKNLHETYFGSFEKKKDFQTVLEACTADYQCLVLDNTKPSTNTTDVCFWYKAKYGKEYKFGCPLLWEYHGRWYMSEKQRYQSQQKT 261          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173773 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWY0_9STRA8.630e-20798.58Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z4P3_9STRA7.710e-13865.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CRE2_9STRA3.010e-10052.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4N1_9STRA2.360e-7542.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CN20_9STRA1.850e-7241.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5I5_9STRA1.130e-7040.15Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
C7U0C4_9PHYC3.620e-5238.11Uncharacterized protein n=9 Tax=root TaxID=1 RepID... [more]
A0A2N9QVV5_9PHYC3.720e-5137.70Uncharacterized protein n=1 Tax=Dishui lake phycod... [more]
A0A0P0YND4_9PHYC4.170e-5135.66Putative VV A32 virion packaging ATPase n=1 Tax=Ye... [more]
Q6XM75_9PHYC8.590e-5135.02FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:6305..7153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173773|e_gw1.106.92.1
Max annot lvl2759|Eukaryota
EggNOG OGs2E819@1|root,2SEJ0@2759|Eukaryota
Evalue6.98e-49
Seed ortholog2880.D8LP63
Hectar predicted targeting categoryother localisation
TranscriptId174095
TrackFilteredModels1
ProteinId173773
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173773gene_9447Tribonema minus UTEX_B_3156 geneContig_106 6305..7153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9447_1exon_9447_1Tribonema minus UTEX_B_3156 exonContig_106 6305..7153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9447CDS_9447Tribonema minus UTEX_B_3156 CDSContig_106 6305..7153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173773Trimin1|173773|e_gw1.106.92.1Tribonema minus UTEX_B_3156 polypeptideContig_106 6305..7153 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9447 ID=mRNA_9447|Name=jgi.p|Trimin1|173773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_106:6305..7153- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCAACTTCGCCAAGTTTGACCCTAAGGAGATGACGCGGTCGCC
TGCATGCGTCGCGATCGTCGGGAAAAGGGGCACTGGTAAGTCTATGCTGA
TCAAAGACCTGCTGTACCATCTCAACCTCGCCGGCGTTCCGCGGTGCATC
TGTTTCTCCGCCACCGAGGAGGCCAACTCGTACTTTGGCACTTTTCTGCC
AAGCGTTTTTGTGCACCCACTGGACCCCGACACCTTGGACAGAGTGTGGA
AGGCTCAGAAGGAGCTGGTGTTACAAAAAAGAGTGGGTCAGCTCAACCCG
GACACAGACACGCGTCTCGTGCTCGTCATGGACGACTGCGCATACCACAA
ACAAATGATGAAGTCGGCAACTCTGCGTGAGATATTCATGAACGGCCGTC
ACCACGGCATCTACTTCATAGTCACGTTGCAGTACCTCATCGACCTCAAC
GTCGCAATGCGAAGTAACGTCGACTGCTGGTTCTATCTCAAGGAGCTCTC
CCACAAGAACCAGGAGAGGATCTACAATGAGTCGTGTGGATTTCTGCCGT
CTTTCTTGACCTTCCAAGACCTCTTCATGGCCAGCACAGCGAACTACGAG
GCGTTCGTGGTCAACTCGAGGTGCAAAAGCAACGACCCACAGAAGATCGT
CGGCCACTATCGAGCTGATGCAAACTTAAATTTTAAGTACGGCGCTCCTG
CTCTCTGGAGGTACCATGAAGAGGTCTATGAAAGTGCCAGCGAAAAGTAC
CAGCGCTTGCAGAGGACGCAGCAGGACAGCAGACCCATGTCGGAAGCGAC
GAAGAGCAGGAAAGGCGGAAACACGATCATCGTGCGTCGACAGGGCTGA
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protein sequence of jgi.p|Trimin1|173773

>Trimin1|173773|e_gw1.106.92.1 ID=Trimin1|173773|e_gw1.106.92.1|Name=jgi.p|Trimin1|173773|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=283bp
MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCI
CFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNP
DTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLN
VAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYE
AFVVNSRCKSNDPQKIVGHYRADANLNFKYGAPALWRYHEEVYESASEKY
QRLQRTQQDSRPMSEATKSRKGGNTIIVRRQG*
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mRNA from alignment at Contig_106:6305..7153-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9447 ID=mRNA_9447|Name=jgi.p|Trimin1|173773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_106:6305..7153- (Tribonema minus UTEX_B_3156 )
ATGACTTTCAACTTCGCCAAGTTTGACCCTAAGGAGATGACGCGGTCGCC TGCATGCGTCGCGATCGTCGGGAAAAGGGGCACTGGTAAGTCTATGCTGA TCAAAGACCTGCTGTACCATCTCAACCTCGCCGGCGTTCCGCGGTGCATC TGTTTCTCCGCCACCGAGGAGGCCAACTCGTACTTTGGCACTTTTCTGCC AAGCGTTTTTGTGCACCCACTGGACCCCGACACCTTGGACAGAGTGTGGA AGGCTCAGAAGGAGCTGGTGTTACAAAAAAGAGTGGGTCAGCTCAACCCG GACACAGACACGCGTCTCGTGCTCGTCATGGACGACTGCGCATACCACAA ACAAATGATGAAGTCGGCAACTCTGCGTGAGATATTCATGAACGGCCGTC ACCACGGCATCTACTTCATAGTCACGTTGCAGTACCTCATCGACCTCAAC GTCGCAATGCGAAGTAACGTCGACTGCTGGTTCTATCTCAAGGAGCTCTC CCACAAGAACCAGGAGAGGATCTACAATGAGTCGTGTGGATTTCTGCCGT CTTTCTTGACCTTCCAAGACCTCTTCATGGCCAGCACAGCGAACTACGAG GCGTTCGTGGTCAACTCGAGGTGCAAAAGCAACGACCCACAGAAGATCGT CGGCCACTATCGAGCTGATGCAAACTTAAATTTTAAGTACGGCGCTCCTG CTCTCTGGAGGTACCATGAAGAGGTCTATGAAAGTGCCAGCGAAAAGTAC CAGCGCTTGCAGAGGACGCAGCAGGACAGCAGACCCATGTCGGAAGCGAC GAAGAGCAGGAAAGGCGGAAACACGATCATCGTGCGTCGACAGGGCTGA
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Coding sequence (CDS) from alignment at Contig_106:6305..7153-

>mRNA_9447 ID=mRNA_9447|Name=jgi.p|Trimin1|173773|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=849bp|location=Sequence derived from alignment at Contig_106:6305..7153- (Tribonema minus UTEX_B_3156 )
ATGACTTTCAACTTCGCCAAGTTTGACCCTAAGGAGATGACGCGGTCGCC
TGCATGCGTCGCGATCGTCGGGAAAAGGGGCACTGGTAAGTCTATGCTGA
TCAAAGACCTGCTGTACCATCTCAACCTCGCCGGCGTTCCGCGGTGCATC
TGTTTCTCCGCCACCGAGGAGGCCAACTCGTACTTTGGCACTTTTCTGCC
AAGCGTTTTTGTGCACCCACTGGACCCCGACACCTTGGACAGAGTGTGGA
AGGCTCAGAAGGAGCTGGTGTTACAAAAAAGAGTGGGTCAGCTCAACCCG
GACACAGACACGCGTCTCGTGCTCGTCATGGACGACTGCGCATACCACAA
ACAAATGATGAAGTCGGCAACTCTGCGTGAGATATTCATGAACGGCCGTC
ACCACGGCATCTACTTCATAGTCACGTTGCAGTACCTCATCGACCTCAAC
GTCGCAATGCGAAGTAACGTCGACTGCTGGTTCTATCTCAAGGAGCTCTC
CCACAAGAACCAGGAGAGGATCTACAATGAGTCGTGTGGATTTCTGCCGT
CTTTCTTGACCTTCCAAGACCTCTTCATGGCCAGCACAGCGAACTACGAG
GCGTTCGTGGTCAACTCGAGGTGCAAAAGCAACGACCCACAGAAGATCGT
CGGCCACTATCGAGCTGATGCAAACTTAAATTTTAAGTACGGCGCTCCTG
CTCTCTGGAGGTACCATGAAGAGGTCTATGAAAGTGCCAGCGAAAAGTAC
CAGCGCTTGCAGAGGACGCAGCAGGACAGCAGACCCATGTCGGAAGCGAC
GAAGAGCAGGAAAGGCGGAAACACGATCATCGTGCGTCGACAGGGCTGA
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