mRNA_9445 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155907
Unique NamemRNA_9445
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: A0A836CMT1_9STRA (HNHc domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT1_9STRA)

HSP 1 Score: 204 bits (520), Expect = 6.040e-67
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 RWRQVPGHPHYNISSIGTVMNHTTGRLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHNR 294
            RWRQVPGHPHYNISSIGTVMNHTTGRLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHNR
Sbjct:    1 RWRQVPGHPHYNISSIGTVMNHTTGRLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHNR 98          
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: A0A835YWT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.990e-26
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 RWRQVPGHPHYNISSIGTVMNHTTGRLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHNR 294
            RWR V   P+Y +SS+GT+ NHT+G+LLS   + GY  VAL + GK +    H LVAKA+L  P++G YTVDH++R  V+N L NL+WAT SEQA N+
Sbjct:   23 RWRSVTEFPNYRVSSVGTIKNHTSGKLLSTHNLTGYTGVALSLGGKQKTLRMHILVAKAYLWRPDDGDYTVDHMNRNMVDNTLENLRWATKSEQARNQ 120          
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: A0A835Z2M0_9STRA (HNH endonuclease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2M0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.880e-20
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 RWRQVPGHPHYNISSIGTVMNHTTGRLLSMSL------------VGGYAVVALIVAGKPRVQTTHRLVAKAFL-HCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAH 288
            RWRQVPGHPHYNISSIGTVMNHTTG ++++                 Y ++   + GK R  + HRLVA A++   P++  + VDH+D V  NND+SNL+  T SE  +
Sbjct:  112 RWRQVPGHPHYNISSIGTVMNHTTGSVVAVQRHRARISNTEAISTAKYRILLASIKGKRR--SAHRLVASAWIGEIPDK--HVVDHIDEVPSNNDVSNLRIVTRSENGN 216          
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: A0A6C0IR59_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IR59_9ZZZZ)

HSP 1 Score: 79.3 bits (194), Expect = 2.040e-15
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    4 WRQVPGHPHYNISSIGTVMNHTTGRLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHNR 294
            WR V G  +Y++S++G V N+ TGRLL   + GGY+ V L      +    HRLV+ AF+  PE     V+HLD+ + NN++SNL+W TA E   +R
Sbjct:    7 WRNVSGWENYSVSNLGKVKNNKTGRLLKQYIRGGYSFVGLCQNHNSKTIPVHRLVSLAFIDNPENKKQ-VNHLDKNRSNNNISNLEWTTAFENCSHR 102          
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: UPI0016885FE7 (HNH endonuclease n=1 Tax=Hymenobacter armeniacus TaxID=2771358 RepID=UPI0016885FE7)

HSP 1 Score: 74.3 bits (181), Expect = 1.330e-14
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   13 VPGHPHYNISSIGTVMNHTTGRLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHN 291
            + GH HY+I+S G V+   TGR+L  S + GY  V L   GK +    H+L+AKAF+  P      VDH+DR + NN+L+NL+W +  + + N
Sbjct:   10 IDGHEHYSITSDGEVIRTKTGRILKQSNMNGYRQVTLSCDGKRKEVLVHQLLAKAFIPNPHRYP-KVDHIDRNRSNNNLTNLRWVSNKQNSRN 101          
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: UPI0009003C81 (HNH endonuclease n=1 Tax=Enterococcus hermanniensis TaxID=249189 RepID=UPI0009003C81)

HSP 1 Score: 68.9 bits (167), Expect = 4.610e-13
Identity = 43/101 (42.57%), Postives = 54/101 (53.47%), Query Frame = 1
Query:    1 RWRQVPGHPHYNISSIGTVMNHTTG---RLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHNR 294
            RW+ + G P Y +SS G V   +T    ++       GY  V L   G    +  H LVA+AFL  P  G  TVDH DR + NN +SNLK+AT SEQ  NR
Sbjct:    4 RWKNIQGFPSYKVSSNGRVAAESTSGTKQIKPYEKDNGYLYVDLYKNGSRSGKRVHILVAEAFLTKPS-GNVTVDHKDRNRHNNKVSNLKYATVSEQNKNR 103          
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: U2P010_ENTFC (Uncharacterized protein n=4 Tax=Enterococcus TaxID=1350 RepID=U2P010_ENTFC)

HSP 1 Score: 68.2 bits (165), Expect = 9.240e-13
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    1 RWRQVPGHPHYNISSIGTVMNHTTG---RLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHNR 294
            +W+++ G+P+Y +SS G V   +T    ++       GY  V L   G+   +  H LVA+AFL  P  G  TVDH DR + NN LSNL+++T SEQ  NR
Sbjct:    4 QWKKIHGYPNYKVSSNGRVSAESTSGTKQVKPYEKDNGYLYVDLYKNGQRTGKRVHVLVAEAFLQKPS-GNVTVDHKDRNRHNNRLSNLRYSTISEQNKNR 103          
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: F0YNE8_AURAN (AP2/ERF domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNE8_AURAN)

HSP 1 Score: 69.3 bits (168), Expect = 1.130e-12
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    1 RWRQVPGHPHYNISSIGTVMNHTTGRLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHNR 294
            +W+ +  +P+Y ISS G +   T  R +      GY  V L  +G  +    HRLVA AF+   +   + VDH+DR + NN++SNL+WAT SE   N+
Sbjct:    3 QWKTIEEYPNYKISSFGNIKTKTQNRSMCFDK-DGYLQVNLSKSGVRKTVRVHRLVALAFIENTDNKPF-VDHIDRDRTNNNISNLRWATKSENQANQ 98          
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: UPI00064324AB (HNH endonuclease n=1 Tax=Enterococcus cecorum TaxID=44008 RepID=UPI00064324AB)

HSP 1 Score: 68.9 bits (167), Expect = 2.380e-12
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    4 WRQVPGHPHYNISSIGTVMNHTTGRLLS--MSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASE 279
            W+++  +P+Y+I+  G V N  T  + S  ++    Y +V L    +P+    HRL+A+AF+  PE    TVDH+D  + NND+SNL+WAT SE
Sbjct:    2 WKKIGRNPNYSINENGEVRNDKTNHIKSCFVNPKNNYLMVDLYENNQPKKVPIHRLIAEAFIPNPENKA-TVDHIDGNRQNNDISNLRWATYSE 94          
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Match: A0A0R1K4I1_9LACO (HNHc domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A0R1K4I1_9LACO)

HSP 1 Score: 68.6 bits (166), Expect = 3.220e-12
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    4 WRQVPGHPHYNISSIGTVMNHTTGRLLSMSLVGGYAVVALIVAGKPRVQTTHRLVAKAFLHCPE-EGGYTVDHLDRVKVNNDLSNLKWATASE 279
            W+++   P Y+IS  G VM   TG+++ +    GY  V ++VA     +  HRLVAKAFL  P+ E    VDH+D  + NND+SNL+W T SE
Sbjct:   18 WKEIDDLPGYSISDKGRVMKDDTGQIMVLGKNNGY--VRIVVA-----KHVHRLVAKAFLDKPKNEEQSWVDHIDGNRSNNDVSNLRWVTPSE 103          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155907 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMT1_9STRA6.040e-67100.00HNHc domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835YWT4_9STRA1.990e-2653.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2M0_9STRA6.880e-2045.87HNH endonuclease-domain-containing protein n=1 Tax... [more]
A0A6C0IR59_9ZZZZ2.040e-1542.27Uncharacterized protein n=1 Tax=viral metagenome T... [more]
UPI0016885FE71.330e-1440.86HNH endonuclease n=1 Tax=Hymenobacter armeniacus T... [more]
UPI0009003C814.610e-1342.57HNH endonuclease n=1 Tax=Enterococcus hermanniensi... [more]
U2P010_ENTFC9.240e-1340.59Uncharacterized protein n=4 Tax=Enterococcus TaxID... [more]
F0YNE8_AURAN1.130e-1237.76AP2/ERF domain-containing protein n=1 Tax=Aureococ... [more]
UPI00064324AB2.380e-1239.36HNH endonuclease n=1 Tax=Enterococcus cecorum TaxI... [more]
A0A0R1K4I1_9LACO3.220e-1243.01HNHc domain-containing protein n=3 Tax=root TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:1001..1294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155907|gw1.106.94.1
DescriptionHNH endonuclease
COG categoryL
Max annot lvl91061|Bacilli
EggNOG OGs2DR9Y@1|root,33AUY@2|Bacteria,1VP6K@1239|Firmicutes,4IRHH@91061|Bacilli
Evalue3.69e-15
Seed ortholog1462526.BN990_02293
Hectar predicted targeting categorysignal anchor
TranscriptId156229
TrackFilteredModels1
ProteinId155907
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155907gene_9445Tribonema minus UTEX_B_3156 geneContig_106 1001..1294 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9445_1exon_9445_1Tribonema minus UTEX_B_3156 exonContig_106 1001..1294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9445CDS_9445Tribonema minus UTEX_B_3156 CDSContig_106 1001..1294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155907Trimin1|155907|gw1.106.94.1Tribonema minus UTEX_B_3156 polypeptideContig_106 1001..1294 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9445 ID=mRNA_9445|Name=jgi.p|Trimin1|155907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_106:1001..1294+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGTGGCGCCAAGTTCCGGGCCACCCGCACTACAACATCTCAAGCATTGG
GACCGTCATGAACCACACCACCGGTAGGCTCTTGAGCATGAGTTTAGTTG
GAGGTTATGCTGTTGTCGCCCTGATAGTTGCTGGGAAGCCCAGAGTTCAG
ACAACTCACAGACTGGTTGCCAAGGCGTTTTTGCATTGCCCTGAAGAAGG
TGGCTACACTGTAGACCACCTTGATAGAGTAAAGGTGAACAACGACCTCT
CCAACTTAAAATGGGCAACTGCGTCTGAGCAGGCTCACAACAGA
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protein sequence of jgi.p|Trimin1|155907

>Trimin1|155907|gw1.106.94.1 ID=Trimin1|155907|gw1.106.94.1|Name=jgi.p|Trimin1|155907|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
RWRQVPGHPHYNISSIGTVMNHTTGRLLSMSLVGGYAVVALIVAGKPRVQ
TTHRLVAKAFLHCPEEGGYTVDHLDRVKVNNDLSNLKWATASEQAHNR
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mRNA from alignment at Contig_106:1001..1294+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9445 ID=mRNA_9445|Name=jgi.p|Trimin1|155907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_106:1001..1294+ (Tribonema minus UTEX_B_3156 )
CGGTGGCGCCAAGTTCCGGGCCACCCGCACTACAACATCTCAAGCATTGG GACCGTCATGAACCACACCACCGGTAGGCTCTTGAGCATGAGTTTAGTTG GAGGTTATGCTGTTGTCGCCCTGATAGTTGCTGGGAAGCCCAGAGTTCAG ACAACTCACAGACTGGTTGCCAAGGCGTTTTTGCATTGCCCTGAAGAAGG TGGCTACACTGTAGACCACCTTGATAGAGTAAAGGTGAACAACGACCTCT CCAACTTAAAATGGGCAACTGCGTCTGAGCAGGCTCACAACAGA
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Coding sequence (CDS) from alignment at Contig_106:1001..1294+

>mRNA_9445 ID=mRNA_9445|Name=jgi.p|Trimin1|155907|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_106:1001..1294+ (Tribonema minus UTEX_B_3156 )
CGGTGGCGCCAAGTTCCGGGCCACCCGCACTACAACATCTCAAGCATTGG
GACCGTCATGAACCACACCACCGGTAGGCTCTTGAGCATGAGTTTAGTTG
GAGGTTATGCTGTTGTCGCCCTGATAGTTGCTGGGAAGCCCAGAGTTCAG
ACAACTCACAGACTGGTTGCCAAGGCGTTTTTGCATTGCCCTGAAGAAGG
TGGCTACACTGTAGACCACCTTGATAGAGTAAAGGTGAACAACGACCTCT
CCAACTTAAAATGGGCAACTGCGTCTGAGCAGGCTCACAACAGA
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