mRNA_9426 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168561
Unique NamemRNA_9426
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A835YSK0_9STRA (Initiator tRNA phosphoribosyl transferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSK0_9STRA)

HSP 1 Score: 563 bits (1451), Expect = 4.610e-203
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
Query:    1 MADHVLWTEEECEPSVWTEADLAVLQDADFRADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEVSSVAFVEQLALL 825
            MADHVLWTEEECEPSVWTEADLAVLQDADFRADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEVSSVAFVEQLALL
Sbjct:    1 MADHVLWTEEECEPSVWTEADLAVLQDADFRADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEVSSVAFVEQLALL 275          
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: R1FCU2_EMIHU (Rit1_C domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FCU2_EMIHU)

HSP 1 Score: 170 bits (431), Expect = 1.720e-48
Identity = 94/200 (47.00%), Postives = 121/200 (60.50%), Query Frame = 1
Query:  112 SVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASI---RGPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAA-DALRAQLGQHLARPLRPLWQAP 699
            S+ ++ R L ++ R D + +LRSI HD++++  A  A+  +P        ANLR G WY   +   G CYFKS DGH G WAFS +R+N+ VA  A+  GG +VVDSTR GKRFPD+L+ TVP+WC V+N   A +   R  DWD  LH PPW+ PSEASQI  RI   VA L   A  A+ A   + L  PLRP W  P
Sbjct:    8 SISRVLRTLHKERRADRIAHLRSIDHDANFVAGAHAAL-GKPAL-----LANLRCGVWYVDQALSAGNCYFKSTDGHAGGWAFSLSRINMQVALAASAHGGAMVVDSTRSGKRFPDSLSKTVPIWCCVVNRACAELSADRRADWDTDLHLPPWVPPSEASQIEARIGGWVAALRRPAMAAVLAGFARALDAPLRPGWLCP 201          
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: D8RSU0_SELML (Uncharacterized protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RSU0_SELML)

HSP 1 Score: 169 bits (427), Expect = 1.940e-45
Identity = 99/229 (43.23%), Postives = 140/229 (61.14%), Query Frame = 1
Query:  112 SVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPD----WDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASE 786
            S+ KIAR ++++ +  L N LRSI  D+ ++   ++A+R      A P  ANLR G WY     ++ TCYFKS DGH G W F+  RLN+H+A  AA +GGC++VDSTR+GKRFPD+++ T+P+W  V+N  ++ +  PD    WDC LH P W+S +E S I  R+   V G+  A+ A  A L   L RPLRPLW +    +  +E  + + G L F PVI +SAS 
Sbjct:   15 SIYKIARSIKRKEQ-SLYNALRSIYDDAGFVAE-IRALRP-----ALPLVANLRCGLWYA--RKFDDTCYFKSTDGHTGNWGFNPARLNIHIAAIAARSGGCMIVDSTRKGKRFPDSMSKTIPIWTCVMNRGISMLLDPDKRKSWDCELHLPSWVSETEKSCIQARLDQWV-GVLLASGADLAGLAASLERPLRPLWISQRSLIWLDE--IPEPGSLDFTPVILVSASR 231          
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A7S2T9V9_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T9V9_9CHLO)

HSP 1 Score: 167 bits (422), Expect = 7.260e-45
Identity = 97/229 (42.36%), Postives = 129/229 (56.33%), Query Frame = 1
Query:  118 GKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRG-KRFPDALTATVPLWCAVINSTLASIRGP----DWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEV 789
            G + R+L+++ R  L N LRSI  DS ++    + I   PG    P  ANLR G WY P   ++G CYFKS DGHCG+W FS+TRLN HVA  AA AGG ++VDST+   KRFPD+   TVP+WC V+N  +A  RG     DWD  +H P W+  SE S +   +      L      L  +L + LA+PLRPLW +   P+  +     D  G  FVPV  +  S++
Sbjct:   10 GNLLRKLKRRERAGLYNVLRSIYEDSLFVRELREDIL--PG---IPVLANLRCGAWYSP--RFDGDCYFKSTDGHCGKWQFSFTRLNAHVARTAAGAGGALLVDSTKSAVKRFPDSFARTVPIWCGVLNRAVAIARGEGDDRDWDREVHLPSWIPDSERSALEPLVEGWSQKLAKTQPGLLEELSEILAKPLRPLWVSDDSPM-WQHVTREDRDGFSFVPVYLLCCSKL 230          
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A7S1WBG7_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WBG7_ALECA)

HSP 1 Score: 160 bits (404), Expect = 8.720e-45
Identity = 95/190 (50.00%), Postives = 116/190 (61.05%), Query Frame = 1
Query:  253 PAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLAS----IRGPDWDCSLHTPPWLSPSEASQIADRI---APSVAGL--GTAADALRAQLGQHLARPLRPLWQAPGVPLST---EEGDLGDMGGLPFVPVICISASE 786
            P  ANLR G WY  P+A +G+CYFKS DGH G W FS TRLNLHVA  A+  GG ++VDSTRRGKRFPD+L  TVP+WCAV+N  LA      RG +  C LH PPW+  SE  QI  ++   A  +A L    A + L A LG  L RPLRPLW +P   L+    E   L +      +PV+CI+AS 
Sbjct:   15 PLLANLRAGAWYCQPTALDGSCYFKSTDGHTGHWDFSTTRLNLHVASLASSRGGVLLVDSTRRGKRFPDSLAKTVPIWCAVLNQVLADHSAGSRG-EVGCHLHLPPWVPASERDQIERKLPAWARRLASLVPAQALEELAAGLGTRL-RPLRPLWISPSDDLAACARESAALSET----CLPVVCITASR 198          
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: I0YZL8_COCSC (Initiator tRNA phosphoribosyl transferase (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZL8_COCSC)

HSP 1 Score: 164 bits (416), Expect = 1.850e-44
Identity = 103/248 (41.53%), Postives = 133/248 (53.63%), Query Frame = 1
Query:  109 PSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIR--------------------GPDWDCSLHTPPWLSPSEASQIADRI---APSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISAS 783
            PSV K+ R L+++    L N + S+  D  ++        S          ANLR G WY P  A  GTCYFKS DGH G W FS TRLNLHVA  AA  GGC++VD+TRRGK FPDA T T+P+W AVIN  ++ +R                     P+WD  LH PPW+S +EA+QI+ R+   A  +  +G  AD   A L   L +PLRPLW +    +   E  +     LPF P+I +SAS
Sbjct:   16 PSVNKLLRHLKKEE-SGLYNCINSVIEDVIFVKEIASIYPS------LSLIANLRCGLWYAPDCA--GTCYFKSTDGHYGNWGFSITRLNLHVAHLAACEGGCLIVDATRRGKTFPDAFTKTIPIWAAVINHAVSLVRKQRTDTGAACATDDGRSSPEAPEWDTELHVPPWISANEANQISMRLDGWAQELLAVG--ADV--AGLALALTKPLRPLWVSQRSQIWLNE--VTQPADLPFTPLILVSAS 248          
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A0L0D870_THETB (Initiator tRNA phosphoribosyl transferase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D870_THETB)

HSP 1 Score: 162 bits (409), Expect = 5.640e-43
Identity = 107/237 (45.15%), Postives = 131/237 (55.27%), Query Frame = 1
Query:   94 ADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGPDWD------CSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLA-RPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISAS 783
            A    PS+    RRL     H L   + SI  D+ ++ +  +     P  T  P FANLR G WY P  A   TCYFKS DGH GQWAFS  RLN HVA +AA AG  ++VD+TRRGK  PDAL+ TVPLW AV+N      R   WD       +LHTPP +  SEA  +A  +AP+   L  AAD   +QL   LA +PLR LW A      +E   L     LPF+P+IC+SAS
Sbjct:    8 ATAATPSLSTTLRRLHSAD-HSLAARILSIAADADWVAAVAELA---PHGT--PVFANLRCGAWYAPQGA--PTCYFKSTDGHTGQWAFSLRRLNAHVAIEAAAAGAALIVDATRRGKPLPDALSKTVPLWAAVLN------RAAGWDPAANSHAALHTPPAIPASEAHDMAACVAPAADALAAAADL--SQLTTALAHKPLRVLWVAQTHRNLSEWPALTHPATLPFIPIICVSAS 228          
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A0D9WR65_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WR65_9ORYZ)

HSP 1 Score: 162 bits (410), Expect = 1.150e-42
Identity = 99/265 (37.36%), Postives = 140/265 (52.83%), Query Frame = 1
Query:   67 AVLQDADFRADGKAP-SVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIR--------------------GPDWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASEVSSV 798
            A  +  D+ A G +  S+ K ARR++++    L N LRS+  D+ ++   + A+       A P  ANLR G WY PP A   TCYFKS DGH G WAFS  RLNLH+A  A   GGC++VDSTRRGKRFPD+++ T+P+WC V+N  +   R                      +WD S+H P W+  +E + I  RI    A   +    +R+ L   L +PLRPLW +    +   E  + ++    F P+I +SAS   +V
Sbjct:    4 AAAESPDYAAGGPSTLSIYKAARRIKRRE-STLYNALRSVADDAAFVAE-IAAL-----WPALPLVANLRCGLWYAPPRALAATCYFKSTDGHAGNWAFSTARLNLHLALLAGERGGCIIVDSTRRGKRFPDSMSKTIPIWCCVLNRAIERYRLQTINRSAAVPNRDSERISCSSNWDNSVHLPVWVLDTERNAIEGRIEEWTAQFESCGADIRS-LSLSLQKPLRPLWISQRTRIWLNE--VPELESWDFTPIILVSASASGAV 258          
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A7S3UNI5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNI5_HETAK)

HSP 1 Score: 152 bits (384), Expect = 1.590e-42
Identity = 74/123 (60.16%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  142 QQSRHDLLNYLRSIQHDSHYITSALQAIRS---RPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVIN 501
            QQ R  + N+ +SIQHDS ++   L   RS      C  F  FAN RNG WY P   W+G CYFKSADGH G+W FS  RLNLHVA  AA AGG VVVDSTRRGK  PD+LTATVP+WCAV+N
Sbjct:    2 QQERTSIYNHCKSIQHDSEFVVDVLGVYRSWAFEKKCLPFTCFANKRNGVWYAPEEEWDGLCYFKSADGHEGRWTFSQGRLNLHVARAAAEAGGVVVVDSTRRGKDCPDSLTATVPIWCAVLN 124          
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Match: A0A2K1L8Q2_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L8Q2_PHYPA)

HSP 1 Score: 162 bits (411), Expect = 2.780e-42
Identity = 107/279 (38.35%), Postives = 144/279 (51.61%), Query Frame = 1
Query:   40 PSVWTEADLAVLQDAD---FRADGKAPSVGKIARRLQQQSRHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATVPLWCAVINSTLASIRGP---------------------------DWDCSLHTPPWLSPSEASQIADRIAPSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGLPFVPVICISASE 786
            PS   EA L+  Q  D    RA     S+ K++R+++Q+  H L N LRSI HDS ++   + A+  R      P  ANLR G WY     +   CYFKS DGH G W+F+ TRLNLHVA  AA  GGC++VD+TR+GKRFPD+++ T+P+W  VIN  LA +R                             DWDC LH P W+S +E + I +R+   V  L      L   L Q L +PLR LW +    +   E  + D   L F P+  +SAS+
Sbjct:   48 PSCGAEACLSKEQRRDCWGLRAGESMESIYKVSRQIKQKE-HSLYNALRSIYHDSLFVAE-IAALWPR-----LPLLANLRCGLWYS--QHFYDVCYFKSTDGHNGNWSFNVTRLNLHVAELAAQKGGCIIVDATRKGKRFPDSMSKTLPIWACVINRALADLRKSLDENPNHLKPEEDFLDSEENSLRRHSLDWDCQLHLPIWVSETEKNNIVNRLDTWVEDLKNCGANL-IPLAQMLRKPLRTLWVSQKTVIWLNE--IVDTETLDFTPIFLVSASQ 314          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168561 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSK0_9STRA4.610e-203100.00Initiator tRNA phosphoribosyl transferase-domain-c... [more]
R1FCU2_EMIHU1.720e-4847.00Rit1_C domain-containing protein n=1 Tax=Emiliania... [more]
D8RSU0_SELML1.940e-4543.23Uncharacterized protein (Fragment) n=4 Tax=Selagin... [more]
A0A7S2T9V9_9CHLO7.260e-4542.36Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A7S1WBG7_ALECA8.720e-4550.00Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
I0YZL8_COCSC1.850e-4441.53Initiator tRNA phosphoribosyl transferase (Fragmen... [more]
A0A0L0D870_THETB5.640e-4345.15Initiator tRNA phosphoribosyl transferase n=1 Tax=... [more]
A0A0D9WR65_9ORYZ1.150e-4237.36Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
A0A7S3UNI5_HETAK1.590e-4260.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2K1L8Q2_PHYPA2.780e-4238.35Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:657789..659558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168561|e_gw1.58.33.1
BRITEko00000,ko01000,ko03016
KEGG koko:K15463
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043399,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564
Preferred nameRIT1
DescriptiontRNA A64-2'-O-ribosylphosphate transferase activity
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2634@1|root,KOG2634@2759|Eukaryota
Evalue2.81e-49
Seed ortholog2903.EOD31064
Hectar predicted targeting categoryother localisation
TranscriptId168883
TrackFilteredModels1
ProteinId168561
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168561gene_9426Tribonema minus UTEX_B_3156 geneContig_58 657789..659558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168561Trimin1|168561|e_gw1.58.33.1Tribonema minus UTEX_B_3156 polypeptideContig_58 657789..659558 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9426_2exon_9426_2Tribonema minus UTEX_B_3156 exonContig_58 657789..658113 -
exon_9426_1exon_9426_1Tribonema minus UTEX_B_3156 exonContig_58 659056..659558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9426CDS_9426Tribonema minus UTEX_B_3156 CDSContig_58 659056..659558 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9426 ID=mRNA_9426|Name=jgi.p|Trimin1|168561|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_58:657789..659558- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACCACGTGCTCTGGACTGAGGAGGAATGTGAGCCATCTGTCTG
GACAGAGGCAGACCTGGCTGTGCTGCAAGATGCCGACTTCAGAGCAGATG
GCAAAGCTCCATCTGTAGGCAAGATCGCTAGGAGGCTGCAGCAGCAGTCT
CGCCATGATCTTCTCAACTACCTCCGTTCCATTCAGCACGACTCCCACTA
CATCACCAGTGCCTTGCAGGCCATCAGAAGCAGGCCGGGGTGCACAGCCT
TCCCGGCATTTGCAAATCTGCGCAATGGTCAGTGGTATGGGCCTCCTAGC
GCTTGGGAAGGTACCTGTTACTTCAAATCCGCAGATGGACATTGCGGGCA
GTGGGCCTTCAGCTACACGCGGCTGAACCTGCATGTGGCGTGCAAGGCGG
CGATGGCTGGAGGCTGTGTGGTAGTGGACAGTACCCGGCGGGGGAAGCGG
TTTCCCGATGCTCTAACTGCAACGGTGCCGCTGTGGTGTGCGGTGATCAA
CAGCACCCTGGCGTCAATCAGGGGGCCCGACTGGGATTGCTCGCTTCACA
CACCCCCATGGCTCAGCCCCTCAGAAGCCTCTCAAATTGCCGATCGCATA
GCGCCCTCTGTGGCTGGGCTTGGCACAGCGGCAGATGCTCTACGTGCACA
GCTAGGGCAGCATTTGGCCAGGCCGCTAAGGCCCCTGTGGCAGGCGCCGG
GGGTACCGCTGAGCACTGAGGAGGGGGATTTGGGGGATATGGGGGGTCTG
CCATTCGTCCCCGTCATCTGTATTAGCGCGTCCGAGGTCAGTTCTGTTGC
TTTTGTGGAGCAGTTGGCCTTATTGTAA
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protein sequence of jgi.p|Trimin1|168561

>Trimin1|168561|e_gw1.58.33.1 ID=Trimin1|168561|e_gw1.58.33.1|Name=jgi.p|Trimin1|168561|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
MADHVLWTEEECEPSVWTEADLAVLQDADFRADGKAPSVGKIARRLQQQS
RHDLLNYLRSIQHDSHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPS
AWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKR
FPDALTATVPLWCAVINSTLASIRGPDWDCSLHTPPWLSPSEASQIADRI
APSVAGLGTAADALRAQLGQHLARPLRPLWQAPGVPLSTEEGDLGDMGGL
PFVPVICISASEVSSVAFVEQLALL*
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mRNA from alignment at Contig_58:657789..659558-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9426 ID=mRNA_9426|Name=jgi.p|Trimin1|168561|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1770bp|location=Sequence derived from alignment at Contig_58:657789..659558- (Tribonema minus UTEX_B_3156 )
ATGGCTGACCACGTGCTCTGGACTGAGGAGGAATGTGAGCCATCTGTCTG GACAGAGGCAGACCTGGCTGTGCTGCAAGATGCCGACTTCAGAGCAGATG GCAAAGCTCCATCTGTAGGCAAGATCGCTAGGAGGCTGCAGCAGCAGTCT CGCCATGATCTTCTCAACTACCTCCGTTCCATTCAGCACGACTCCCACTA CATCACCAGTGCCTTGCAGGCCATCAGAAGCAGGCCGGGGTGCACAGCCT TCCCGGCATTTGCAAATCTGCGCAATGGTCAGTGGTATGGGCCTCCTAGC GCTTGGGAAGGTACCTGTTACTTCAAATCCGCAGATGGACATTGCGGGCA GTGGGCCTTCAGCTACACGCGGCTGAACCTGCATGTGGCGTGCAAGGCGG CGATGGCTGGAGGCTGTGTGGTAGTGGACAGTACCCGGCGGGGGAAGCGG TTTCCCGATGCTCTAACTGCAACGGTGCCGCTGTGGTGTGCGGTGATCAA CAGGTGCGCTGTCAACGCATGATGCGAATAGAATGTAGTGCTTCTGCCGA CCAGAAACAAAATTTTCCTTAAATCATTCTCACGTGAGGGGCGAAGACCC CTGGCATGTACTTGGCGAGCACAAGTGTAGTGCATGGGGGTTGTGCCACA TCTGCAGGGCATGATCTTATGCAGTACTCATGTTCATGGACTGATGCATG TATGGTGGTCAGCAGATCGCACACCAATTGAACATGGGTGCTCAAAGGTG TAGTGAGCACGAGTGCGGAGGAATGGATTAAGGGCAGGGTTAGCAAACCA GAATCCGCGGGTTTGGTTGCTATTTGCAGCGTGGAACTCAAGTGTTATGA TTGTGCTTGAGCATTTTTCAAGTAGAACCATGATAATCCCCTATGCAAGC CTCTTCGTATGAACCAGCCATGAAGGCGTGTGTGAGCTCACGCGATGTAG TGGTATTAGTGACATCTATAGAGAGCAGTTTTTTACTCATTTTTAAGTGC TATCAAGTCAGTGTAATGCGCTCGGCATCACTTGATAGACACAGGCGGAC TCGACGTTGTGCGAGCTGCAAGCATACGTGATTATGGCCTCATAGAGGGC AGTTACAGCTAAGAGAAGCATCATAAGAGCGAAGGTTGTCAGCAAGCTGG AGCAGGAGCGGCGAGCGCGACGTCTGCTGTTGCTGCGCGCTGCCTTCCTT GTACATGCTCCACTGAGTAGCGTTGACGGCCACAGTAGACCTCTTTGCGG CTTCACAAACGGCGGCTGCGTGTGTAGGTCAACACATGGACTGATGTTGC ATGGTGCGCATGACTCGCCAGTCTTATTGCAGCTTCAATTGCAGCTCCAA GTAGCATACATGTCATGCCATCCATTCCTTCAATTCCACTGCAAGTTCAA GCCTAACCACCACCTCAAACCTCACCCCCCCTGCCCCTACCCCAGCACCC TGGCGTCAATCAGGGGGCCCGACTGGGATTGCTCGCTTCACACACCCCCA TGGCTCAGCCCCTCAGAAGCCTCTCAAATTGCCGATCGCATAGCGCCCTC TGTGGCTGGGCTTGGCACAGCGGCAGATGCTCTACGTGCACAGCTAGGGC AGCATTTGGCCAGGCCGCTAAGGCCCCTGTGGCAGGCGCCGGGGGTACCG CTGAGCACTGAGGAGGGGGATTTGGGGGATATGGGGGGTCTGCCATTCGT CCCCGTCATCTGTATTAGCGCGTCCGAGGTCAGTTCTGTTGCTTTTGTGG AGCAGTTGGCCTTATTGTAA
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Coding sequence (CDS) from alignment at Contig_58:657789..659558-

>mRNA_9426 ID=mRNA_9426|Name=jgi.p|Trimin1|168561|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_58:657789..659558- (Tribonema minus UTEX_B_3156 )
ATGGCTGACCACGTGCTCTGGACTGAGGAGGAATGTGAGCCATCTGTCTG
GACAGAGGCAGACCTGGCTGTGCTGCAAGATGCCGACTTCAGAGCAGATG
GCAAAGCTCCATCTGTAGGCAAGATCGCTAGGAGGCTGCAGCAGCAGTCT
CGCCATGATCTTCTCAACTACCTCCGTTCCATTCAGCACGACTCCCACTA
CATCACCAGTGCCTTGCAGGCCATCAGAAGCAGGCCGGGGTGCACAGCCT
TCCCGGCATTTGCAAATCTGCGCAATGGTCAGTGGTATGGGCCTCCTAGC
GCTTGGGAAGGTACCTGTTACTTCAAATCCGCAGATGGACATTGCGGGCA
GTGGGCCTTCAGCTACACGCGGCTGAACCTGCATGTGGCGTGCAAGGCGG
CGATGGCTGGAGGCTGTGTGGTAGTGGACAGTACCCGGCGGGGGAAGCGG
TTTCCCGATGCTCTAACTGCAACGGTGCCGCTGTGGTGTGCGGTGATCAA
CAGCACCCTGGCGTCAATCAGGGGGCCCGACTGGGATTGCTCGCTTCACA
CACCCCCATGGCTCAGCCCCTCAGAAGCCTCTCAAATTGCCGATCGCATA
GCGCCCTCTGTGGCTGGGCTTGGCACAGCGGCAGATGCTCTACGTGCACA
GCTAGGGCAGCATTTGGCCAGGCCGCTAAGGCCCCTGTGGCAGGCGCCGG
GGGTACCGCTGAGCACTGAGGAGGGGGATTTGGGGGATATGGGGGGTCTG
CCATTCGTCCCCGTCATCTGTATTAGCGCGTCCGAGGTCAGTTCTGTTGC
TTTTGTGGAGCAGTTGGCCTTATTGTAA
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