mRNA_9412 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|78177
Unique NamemRNA_9412
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A835YRM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM9_9STRA)

HSP 1 Score: 461 bits (1186), Expect = 3.020e-163
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 2
Query:  122 MASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 814
            MASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL
Sbjct:    1 MASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 231          
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A836CMC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC3_9STRA)

HSP 1 Score: 323 bits (827), Expect = 1.610e-108
Identity = 157/230 (68.26%), Postives = 187/230 (81.30%), Query Frame = 2
Query:  125 ASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 814
            A+  E + IG   DG+NS+RT+ AVER   VTLHF+RHAQATHN AAEK GR AY D A +DARLTDLGREQ + L   + +  +E+QLMVVSPMSRA++TA IAF++VPSH+PW+ALEC RER+GNH CDKRRT+TEL + +P IDWS +ESDSD  WDTLG+DRETD MM  RAH LF+WIR+R ETNIAIVTHSA+LSVLFNKAVRCG  LQ WF+NAE+R+ LMQL
Sbjct:    7 AAYNEAADIGECKDGINSKRTLVAVERRNAVTLHFIRHAQATHNAAAEKVGRAAYYDWAHLDARLTDLGREQAQGLGATLGTTIDEIQLMVVSPMSRALETASIAFEQVPSHIPWVALECARERAGNHPCDKRRTRTELKEHFPHIDWSLIESDSDALWDTLGEDRETDGMMVARAHDLFEWIRARPETNIAIVTHSAYLSVLFNKAVRCGEGLQTWFNNAEMRSTLMQL 236          
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: D8LI64_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI64_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 1.360e-70
Identity = 108/218 (49.54%), Postives = 153/218 (70.18%), Query Frame = 2
Query:  161 SDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 814
            SDG    + V  V+R +  T+HF+RHA+ THNEAA K GR AY+    +DARLTDLG++QC TL+       +E QL+VVSP++RAI TA +  D+V   VPW+ALEC+RER+G H CD+RR  +EL  +YP I +  ++ + DVY+D+LG++RE +++M DR   LF W++ R ETNI +VTHSAFL  LFN+A++      +WF+N ELR+V ++L
Sbjct:   13 SDG---HKVVGVVQRSKAKTVHFIRHAEGTHNEAALKEGRAAYAKIEHLDARLTDLGKQQCATLKATKHGIEKEAQLVVVSPLARAIQTATLTIDQVEG-VPWVALECVRERAGAHPCDRRRCVSELKGEYPNISFDAIKDEKDVYFDSLGEEREPNDLMADRGRELFSWLKDRPETNIVVVTHSAFLLCLFNEAMQAAPETAKWFENCELRSVFLEL 226          
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: D8LI65_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI65_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 4.270e-64
Identity = 105/214 (49.07%), Postives = 141/214 (65.89%), Query Frame = 2
Query:  173 NSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLMQL 814
            N  + V  V+R    T+HF+RHA+ THNEAA K GR A+S    +DARLTDLG+EQC TL+       +E +L+VVSP++RAI+TAM+A D+V   VPW+ALEC+RER+G   CD+RR  +EL  +YP I +  +  D D Y+D+ GD+RET + M  R   LF W+R R ETNI +VTHS FL  LF + +       + F N ELR+VL+ L
Sbjct:   14 NGHKVVGVVQRSTAKTVHFLRHAEGTHNEAALKEGRAAFSKIEHLDARLTDLGKEQCATLKAANHGIEKEAELVVVSPLTRAIETAMLAIDQVEG-VPWVALECVRERAGVQPCDRRRCVSELKMEYPNISFDAITDDDDAYFDSQGDERETYDSMAHRGRELFSWLRDRPETNIVVVTHSGFLLSLFKRVMLSPPDTAKDFKNCELRSVLLDL 226          
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A7S4JBS8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JBS8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 7.080e-59
Identity = 102/197 (51.78%), Postives = 136/197 (69.04%), Query Frame = 2
Query:  218 TLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCR-TLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFD-KVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWD-TLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRT 799
            T+HFVRHAQATHN AA++ GR AY DP   DARLT+ G +QC   L+    S   EV L++VSP +RA DTA+  F   V   V W ALEC+RE+SG H CD RR  ++L  ++P+I++S +E D DVY + TLG++RETDEM+  RA     ++  R E N+ +VTHSAFL VLFN+ V CG+ L+RW++N E+RT
Sbjct:   32 TVHFVRHAQATHNLAAKEEGRIAYMDPTHHDARLTEGGMKQCDGRLREHAKSVAGEVDLVLVSPCTRATDTALRGFGGDVSESVKWYALECLREKSGQHPCDGRRAVSQLKAEFPKINYSLMEDDEDVYGEKTLGEERETDEMVAARARQFLAFLDGRPERNVVVVTHSAFLCVLFNRVVTCGSDLRRWYENCEMRT 228          
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A6V1S4P3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S4P3_HETAK)

HSP 1 Score: 177 bits (448), Expect = 8.810e-51
Identity = 95/203 (46.80%), Postives = 126/203 (62.07%), Query Frame = 2
Query:  218 TLHFVRHAQATHNEAAEK-RGREAYSDPAFMDARLTDLGREQCRTLQGRVVS-----NCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLM 808
            T+HFVRHAQA HNE   K + R+AY DP F DA LT LG+EQC T +    S          +L+VVSP+ R + TA +AF +    VPW+ALE +RER+G+H CD+RR      +++P +D+S V+ + DV W   G  RE+DE M  R+ AL  ++  R E NI +VTHSAFL   FNK V C   L+RWF N E R+V +
Sbjct:   34 TVHFVRHAQALHNEKFNKTKDRKAYQDPRFEDAELTALGKEQCATAKAEWASARGRHGYGPPELVVVSPLRRCLQTATLAFGQYAGQVPWVALEEVRERNGHHPCDRRRPLAHARKEFPHVDFSLVKDEEDVTWGD-GRWRESDEEMAVRSAALLKFLAGRPERNIIVVTHSAFLLCTFNKVVVCEPELRRWFANCERRSVAL 235          
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A4D9DAJ2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAJ2_9STRA)

HSP 1 Score: 173 bits (438), Expect = 3.380e-49
Identity = 94/203 (46.31%), Postives = 124/203 (61.08%), Query Frame = 2
Query:  209 QTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCG-ARLQRWFDNAELRTVLMQL 814
            Q  T++FVRHA+A HNEA + RGR AY+DP+F+D  LT LG  QC  L+  V +    + L+V+SP+ RA+ TA +AFD     V WIALE +RER G +ACDKRR +  L  +YP +D+ K+  + D  W      RET   M +R      W+R R E  I +VTHSAFLS LF +   C    + RWF+NAELR V + L
Sbjct:   75 QIKTVYFVRHAEALHNEAFKVRGRAAYADPSFLDPELTKLGVSQCLALKPSVEAIQSSIDLVVISPLRRALMTAALAFDH-RKEVSWIALETVRERIGKNACDKRRRRGVLEAEYPDVDFEKI-GEEDTRW--TEHHRETPAEMAERGLEFLAWLRGRPEDRIGVVTHSAFLSTLFAEVFECADPAMSRWFENAELRAVYLIL 273          
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A7S2Y325_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y325_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.630e-49
Identity = 84/214 (39.25%), Postives = 133/214 (62.15%), Query Frame = 2
Query:  173 NSRRTVAAVERGQTVTLHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQG--RVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRWFDNAELRTVLM 808
            +    V A+  G   T+HF+RHA+ THN+A+   GR  Y +  + DARLT+ G+ QCR      ++  + +  QL++VSP++R ++TA +  DKV   VPW+ALECIRER   + CD+RR+   + +++P +D+S  E   D  W      RE++E +  R      W+ +R ETN+ +VTHSAFL + FN+ ++C   ++RWF+N E+R+VL+
Sbjct:   48 DEEHVVVAIPTGNYKTVHFIRHAEGTHNQASALYGRTEYQNWRWEDARLTEHGKRQCREANEAEKLNHHLKGHQLVLVSPLTRCLETAELVVDKVAG-VPWVALECIRERLHGNPCDRRRSINVVAKEFPYVDFSSFEVKPDKLWQE--GPRESNEELAARGREFLKWLEAREETNVVVVTHSAFLDITFNQVLKCDVAMKRWFNNCEIRSVLL 258          
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A482S1J1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1J1_9ARCH)

HSP 1 Score: 138 bits (348), Expect = 4.850e-36
Identity = 75/203 (36.95%), Postives = 115/203 (56.65%), Query Frame = 2
Query:  221 LHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWD--TLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAVRCGARLQRW---FDNAELRTVLMQL 814
            +HFVRHA+  HN AA       Y      DA +T+ G +QC+ L  ++       QL+VVSPMSR + TA  +F  +   +PW+++ECIRER+G H CDKRR  +   QQY  +D+  +  + D  +   TL   RE +E ++ RA    DW+ SR E  I +V+HS FL +L N+ ++   + +     F N E++T +++L
Sbjct:   47 VHFVRHAEGHHNVAARNDPLRGYLRNDLEDAHITEEGLKQCQELSEKMKHVTAHSQLLVVSPMSRTLQTASHSFPHLQHKIPWVSIECIRERTGLHPCDKRRALSVYKQQYTYVDFDHIHHEEDPLFPKYTL---REPEEQVKARAREFLDWLASREEREIVVVSHSNFLRILLNQVLQVELQHEDQGGKFANCEIKTYVLRL 246          
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Match: A0A5A8EK01_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8EK01_CAFRO)

HSP 1 Score: 138 bits (348), Expect = 1.220e-35
Identity = 79/202 (39.11%), Postives = 114/202 (56.44%), Query Frame = 2
Query:  221 LHFVRHAQATHNEAAEKRGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWSKVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAFLSVLFNKAV------RCGARLQRWFDNAELRTVLM 808
            L+ +RH Q  HN AA  RGR AY DP  +DARL  +G+EQ   L   +  +   +QL+VVSP+ R ++TA  AF    + VP +A+E +RE  G H CDKR   +E+ + +P +D+S + +D D + +   D RET   + +R HA   +IRSR E NIA+V+H  FL  L    V      R  A     F N E+R +++
Sbjct:   19 LYLIRHGQGHHNTAARDRGRAAYKDPTLLDARLDHVGKEQANALGDHIRMHRIPIQLVVVSPLRRTLETATQAFG---TSVPMVAVELVREAHGAHPCDKRSPVSEIRKDFPHVDFSFISTDEDTWHND--DRRETIREVAERGHAFLRFIRSRPERNIAVVSHGVFLETLVGGLVLGVVDPRVSAER---FRNCEMRAIVV 212          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|78177 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRM9_9STRA3.020e-163100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CMC3_9STRA1.610e-10868.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LI64_ECTSI1.360e-7049.54Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 ... [more]
D8LI65_ECTSI4.270e-6449.07Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S4JBS8_9STRA7.080e-5951.78Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A6V1S4P3_HETAK8.810e-5146.80Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9DAJ2_9STRA3.380e-4946.31Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S2Y325_9STRA4.630e-4939.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482S1J1_9ARCH4.850e-3636.95Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A5A8EK01_CAFRO1.220e-3539.11Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:481231..484826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|78177|CE78176_53
Descriptionisomerase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4754@1|root,KOG4754@2759|Eukaryota
Evalue1.04e-71
Seed ortholog2880.D8LI64
Hectar predicted targeting categoryother localisation
TranscriptId78499
TrackFilteredModels1
ProteinId78177
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|78177gene_9412Tribonema minus UTEX_B_3156 geneContig_58 481231..484826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|78177Trimin1|78177|CE78176_53Tribonema minus UTEX_B_3156 polypeptideContig_58 481352..484791 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9412_1exon_9412_1Tribonema minus UTEX_B_3156 exonContig_58 481231..481528 +
exon_9412_2exon_9412_2Tribonema minus UTEX_B_3156 exonContig_58 482147..482296 +
exon_9412_3exon_9412_3Tribonema minus UTEX_B_3156 exonContig_58 482771..482850 +
exon_9412_4exon_9412_4Tribonema minus UTEX_B_3156 exonContig_58 483538..483630 +
exon_9412_5exon_9412_5Tribonema minus UTEX_B_3156 exonContig_58 484596..484826 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9412UTR5_9412Tribonema minus UTEX_B_3156 five_prime_UTRContig_58 481231..481351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9412CDS_9412Tribonema minus UTEX_B_3156 CDSContig_58 481352..481528 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9412UTR3_9412Tribonema minus UTEX_B_3156 three_prime_UTRContig_58 484792..484826 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9412 ID=mRNA_9412|Name=jgi.p|Trimin1|78177|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=852bp|location=Sequence derived from alignment at Contig_58:481231..484826+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAAGTTTTACTCAGCGGTGGCAAAACCAGAGACTGCGCCTGCAGCAAAC
AGTACAAGTGCTGAGGAAGTGTTCTCAGCCTGCTTGCCCAAGTACGGTTT
CGCACCCGAGCAGAGGTCATCATGGCGAGTGCCACTGAGCCTTCAGCTAT
CGGCGCTGCCAGCGATGGCGTCAACAGCAGGCGAACAGTGGCTGCCGTAG
AGCGAGGCCAAACCGTGACTCTGCACTTTGTGCGGCATGCACAGGCGACC
CACAACGAAGCTGCTGAGAAGCGCGGCAGAGAGGCATATTCAGACCCTGC
GTTCATGGATGCCAGGCTGACAGATTTGGGGCGGGAACAGTGCCGCACTC
TGCAGGGGCGGGTGGTCTCGAACTGTGAGGAGGTGCAACTCATGGTGGTG
TCTCCCATGTCTAGAGCCATAGACACTGCGATGATTGCCTTCGACAAGGT
CCCCAGTCACGTGCCTTGGATTGCGCTAGAATGCATTCGGGAGCGGTCAG
GGAACCACGCGTGTGACAAGCGGAGAACGAAGACTGAGCTGCTGCAGCAA
TACCCTCAAATAGACTGGTCAAAGGTGGAATCGGATTCGGACGTGTATTG
GGATACGCTGGGAGATGACAGAGAAACTGATGAGATGATGGAAGACCGCG
CGCACGCGCTCTTCGACTGGATCCGCAGCCGCAGCGAGACCAACATAGCC
ATTGTCACGCACAGCGCGTTCCTGTCGGTGCTCTTCAACAAGGCCGTGCG
GTGCGGCGCGCGCCTGCAGCGCTGGTTTGACAATGCTGAGCTGCGCACCG
TCCTCATGCAGCTCTGAATCTGACTCTGAGTCGTGCTCCAAGGAGGCCAC
GG
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protein sequence of jgi.p|Trimin1|78177

>Trimin1|78177|CE78176_53 ID=Trimin1|78177|CE78176_53|Name=jgi.p|Trimin1|78177|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=232bp
MASATEPSAIGAASDGVNSRRTVAAVERGQTVTLHFVRHAQATHNEAAEK
RGREAYSDPAFMDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAI
DTAMIAFDKVPSHVPWIALECIRERSGNHACDKRRTKTELLQQYPQIDWS
KVESDSDVYWDTLGDDRETDEMMEDRAHALFDWIRSRSETNIAIVTHSAF
LSVLFNKAVRCGARLQRWFDNAELRTVLMQL*
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mRNA from alignment at Contig_58:481231..484826+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9412 ID=mRNA_9412|Name=jgi.p|Trimin1|78177|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3596bp|location=Sequence derived from alignment at Contig_58:481231..484826+ (Tribonema minus UTEX_B_3156 )
AGAAGTTTTACTCAGCGGTGGCAAAACCAGAGACTGCGCCTGCAGCAAAC AGTACAAGTGCTGAGGAAGTGTTCTCAGCCTGCTTGCCCAAGTACGGTTT CGCACCCGAGCAGAGGTCATCATGGCGAGTGCCACTGAGCCTTCAGCTAT CGGCGCTGCCAGCGATGGCGTCAACAGCAGGCGAACAGTGGCTGCCGTAG AGCGAGGCCAAACCGTGACTCTGCACTTTGTGCGGCATGCACAGGCGACC CACAACGAAGCTGCTGAGAAGCGCGGCAGAGAGGCATATTCAGACCCTGT AAGTCAGAGTTATGTCATTCGTGTCACGTCATTTTAGGCTTTTGAAGGTT CGAACATGCTGTACATATACATGTGCACCTGCCAAGTTCACAACAGTCAT CGTCGAGCTGCCTCGCCGGAGACTGTGCATGAGCATTACGTCTGCAGTAA TCCTGGGAATACGTCGCCTGCCTCGCATCTGCTGCTAACCAGATGCGAGG TTCTGAAGGTCTTATCGTGTGGATTCAAGATTATCATTATGATAGCTTGG GATTTTTGATCTTGGTCACAAGCATCATCAGCCATCATGCACTGGGGTGG CAAGTATCAGCACCTTCAGCATTACAACTTCAACTTCCTGATGGTCAAAA CACATCCGCCGCAGCCATGTCCTGGCAGTTGTTGCCATCAAGGTGTCGAT CAGGGTTCGGTAATCCACTGTCTTTTTTTTCCTTTTTTCTCAGGTTGAGG TGAGATCAGGGCTAGGTATAGCGTGCAAGTTTTGATATTTTGTGACAAGC ATCATCAGCCACCATTAACTGGGTAGGCAAGTTTCAGCTGATTCAGCTTC ACATCCACAAATCAGCTCCCAATTACCTCAACGTCCTTGCACATGGTTCT ATTGTGACTTTTGCAGGCGTTCATGGATGCCAGGCTGACAGATTTGGGGC GGGAACAGTGCCGCACTCTGCAGGGGCGGGTGGTCTCGAACTGTGAGGAG GTGCAACTCATGGTGGTGTCTCCCATGTCTAGAGCCATAGACACTGCGAT GATTGCCTTCGACAAGGTACGCGCTTGTCTTCGTGAGTGGAAGTGGCAGT GGCTCTGCAACTCGGAAGTGGCAGTACTGGAATATACCTACAGTTATGGC GTATTCATTTTATGATAGTGGCGGTGATGGTGGCATCAAGACCCGTGGCG ATATGCCATTGAGACCTTGCAGAAGCTGACTGCACTCGGCAGCGCAGAGA GCCTTAAACGATCTGATCAGTCAACGACACGAGTCAGCGACGAAAGTCAT GCCGCCTCCACAAATGGGCTGTGACTCACAACACATTGTGTACATCCTTA AGAACATGAGCGTGCTGAGCACAGATGGCGCTTGACTTATGTTATTGCTC ACGCTGGATTCTTATCGGCCACCATCTACATCTTGTGCATGTCGTAAGGT TGCATGCATGTGCGTGCATCATTCGTCACGATGGTGTTCACATTCACGCT GTGTACCCCGCTGCTGCTGACTCTGCTCGCTGGTGCACAGGTCCCCAGTC ACGTGCCTTGGATTGCGCTAGAATGCATTCGGGAGCGGTCAGGGAACCAC GCGTGTGACAAGCGGAGAACGTGAGTTTGCTGTCGTAGCTTTGAGCATAA GCAGATTGGGGATGGGGATGGCTGCGTGCGTGGCAATGTGCGCATGTAGC ATACTGATGGCTTGCGGTACCAAGTCGTGTCAGAGTAGAGGTGGCTAAAG GAGTCATATGCGCTGTGGCAGGTGTACATGTATGCCCCTGCATGCGATTG CTGCGTGTCAGTCGCGTGCGAAGCAGCTGCCACGATGGTGACTGCTGCGA AGTCGCACGAGAAGCGCGAGACCCGCCCTTCCGCGTTGTGCTAGCATATT GCAATATGTGGCAATTGCAGCTAGACGTACAGTGGCCTGATGCATGAGCT GAAGCAACTTCATGAAGCTGCAGAATCCTAGCATCCTCTACAAAGATCGC GATCCTAGGTCAGCCCCCAACAGGTCCGACCACGGCTGCCTTGGCATGCA TCTGTCCGTTATGTGAGGCTTACGACTGATGTGCATACTTTTAGGCCGCC TGCCACTTTACTAGCCATGGGGCGCACAATGCGTCTCTCGCATACTATCT GCGCCTGCACACCTGTATACAAAACGAGTTTGTCACGTGCGTTTGGTTTC GCATGTGTGCCCAGACTTGAAGTACCAATGCGGCAGTTGCACTGACTGTT GTGCATGGCTGACTCCCACTGTACCTTCACTGCATCCCGGCTCTGTTTGG TTTGCAGGAAGACTGAGCTGCTGCAGCAATACCCTCAAATAGACTGGTCA AAGGTGGAATCGGATTCGGACGTGTATTGGGATACGCTGGGAGATGACAG GTACTACCCTGTCAACATGTGAACCTTTTCATAACCCGACTTTTCCAATT GGTTTAGTTGGGGAGTAGAAATTCAAGGCCTGTGAAGTATTCACAAACCA ACATCACAACTGCAAAGTGTCCACATCGTACCTGAAGTGTGACCATGCAT GATGGAAGTACTTAAGGATGTATGTGTGGTCGTGTGCGCCAGCTGTCAGG CACATGAGGCACTACTGTACGGCCCCTCCACGGCAAATTGCAATGCCATA GCGAGAAACACAACGTGTAATGGCAGTAATTGTCAACAACGACCCTTCAC AAAGAATATAGAAGTACAAACTTCAATATGCGAACCTCAAAAGCAGAGGC CCTCACCGGACATCCCCAAGCACGCATGCGGCTGCGCTCACAACTCTTGT CTGTGCACATACAAAGCATCTGCAACAAGCGAACCCTGTGCTGTGGAACA CGGGTATGTAGCAGCGTTGGTGCACATGCGCAAAACAAAAAAGGTGCCGG TGCCGGTTGGCAATATATCCTGCATGCAGCATTGGTGCAGAATTGCTCAA CACAGATGCCGGCCGGCAATGGCGAAATGGCTGTCAGCGCAAAATGCATC CTAGTTACCGGTGCAAGAGTGCTGGAGGCAGTGCTTACCAACCGTGCCGC ACCCGCTTGACTACTAGAGGTTTGCTTCGCTGGATTTATTGGAGAATGCA CTGACTGCCATGTAGACAGACGCGGCCAGCAGCCTCTGTTCTGCAACGTG TGCGCAGCCACACCACCGCCCTTTGCCCTGCTGCAATTGATACCAACTGT ACTCCTGTTCCACCGTGCGCTGGCACCGGTGATACACTGTGTAGTTTCAA ACATGCATCACAAAGTTTGCCCTGACCGCCCATGTTTTGGCCTTGAGTGC ACCAGTGCAAGTGCATGAGATAACTGTGACAACTGCCCCCTACTCCACCC CCCATCCCTGTGCAGAGAAACTGATGAGATGATGGAAGACCGCGCGCACG CGCTCTTCGACTGGATCCGCAGCCGCAGCGAGACCAACATAGCCATTGTC ACGCACAGCGCGTTCCTGTCGGTGCTCTTCAACAAGGCCGTGCGGTGCGG CGCGCGCCTGCAGCGCTGGTTTGACAATGCTGAGCTGCGCACCGTCCTCA TGCAGCTCTGAATCTGACTCTGAGTCGTGCTCCAAGGAGGCCACGG
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Coding sequence (CDS) from alignment at Contig_58:481231..484826+

>mRNA_9412 ID=mRNA_9412|Name=jgi.p|Trimin1|78177|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=696bp|location=Sequence derived from alignment at Contig_58:481231..484826+ (Tribonema minus UTEX_B_3156 )
ATGGCGAGTGCCACTGAGCCTTCAGCTATCGGCGCTGCCAGCGATGGCGT
CAACAGCAGGCGAACAGTGGCTGCCGTAGAGCGAGGCCAAACCGTGACTC
TGCACTTTGTGCGGCATGCACAGGCGACCCACAACGAAGCTGCTGAGAAG
CGCGGCAGAGAGGCATATTCAGACCCTGCGTTCATGGATGCCAGGCTGAC
AGATTTGGGGCGGGAACAGTGCCGCACTCTGCAGGGGCGGGTGGTCTCGA
ACTGTGAGGAGGTGCAACTCATGGTGGTGTCTCCCATGTCTAGAGCCATA
GACACTGCGATGATTGCCTTCGACAAGGTCCCCAGTCACGTGCCTTGGAT
TGCGCTAGAATGCATTCGGGAGCGGTCAGGGAACCACGCGTGTGACAAGC
GGAGAACGAAGACTGAGCTGCTGCAGCAATACCCTCAAATAGACTGGTCA
AAGGTGGAATCGGATTCGGACGTGTATTGGGATACGCTGGGAGATGACAG
AGAAACTGATGAGATGATGGAAGACCGCGCGCACGCGCTCTTCGACTGGA
TCCGCAGCCGCAGCGAGACCAACATAGCCATTGTCACGCACAGCGCGTTC
CTGTCGGTGCTCTTCAACAAGGCCGTGCGGTGCGGCGCGCGCCTGCAGCG
CTGGTTTGACAATGCTGAGCTGCGCACCGTCCTCATGCAGCTCTGA
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