mRNA_9390 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168448
Unique NamemRNA_9390
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: A0A835YNQ5_9STRA (WD repeat-containing protein 24 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ5_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.310e-49
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 RCEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHCNLNLVLCEVP 198
            RCEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHCNLNLVLCEVP
Sbjct:    1 RCEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHCNLNLVLCEVP 66
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: I2CPR4_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPR4_NANGC)

HSP 1 Score: 98.6 bits (244), Expect = 5.790e-25
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    4 CEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHCN 171
            C KC   +S+CALC QPVR +YVWCPGCGHGGH+ H+ EWF   S CPTGCGH C+
Sbjct:   76 CGKCRALVSQCALCLQPVRGVYVWCPGCGHGGHIDHLQEWFAANSECPTGCGHRCH 131
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: A0A7S0K0D3_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K0D3_CAFRO)

HSP 1 Score: 92.8 bits (229), Expect = 8.580e-23
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    4 CEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASA-CPTGCGHHCNLNLVLCE 192
            CE+C +    C+LC+ PV  L+VWC GCGHGGHL HM EWF  +S  CP GCGH CNL  ++ E
Sbjct:   27 CERCKRTAPICSLCQMPVSGLFVWCQGCGHGGHLEHMQEWFASSSTVCPAGCGHACNLRPLVAE 90
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: A0A4D9DDY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDY3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.770e-22
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    4 CEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHCN 171
            C KC   +S+CALC QPVR +YVWCPGCGHGGH+ H+ EWF   S CPTGCGH C+
Sbjct:  957 CGKCRALVSQCALCLQPVRGVYVWCPGCGHGGHIDHLQEWFAANSECPTGCGHRCH 1012
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: A0A2R5GG06_9STRA (GATOR complex protein WDR24 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GG06_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.570e-21
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 CEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHCNLNLV 183
            CE C   +SRCA+CEQ V+ +YVWC GCGH GHL HM EWF     CPTGCGH+C L+ +
Sbjct: 1404 CETCKHTVSRCAICEQVVKGVYVWCQGCGHAGHLDHMTEWFRTEKTCPTGCGHNCTLSDI 1463
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: A0A1X2GBD5_9FUNG (WD40 repeat-like protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GBD5_9FUNG)

HSP 1 Score: 94.7 bits (234), Expect = 3.960e-21
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    4 CEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHCNL 174
            C+KC + L+ C++C Q V+SLYVWC GC HGGHL HMH+WF     CPTGCGH C L
Sbjct:  683 CDKCHRLLNPCSICHQTVKSLYVWCQGCNHGGHLDHMHDWFADEKECPTGCGHQCVL 739
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: A0A7S2R7E5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R7E5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.580e-20
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    4 CEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHCNL 174
            C  C   +SRC++C+Q VR +YVWC GCGHGGHL H+ +WF   + CPTGCGH C+L
Sbjct: 1087 CGTCKNTISRCSICQQAVRGVYVWCQGCGHGGHLDHLTQWFKTETECPTGCGHTCSL 1143
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: K3X200_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X200_GLOUD)

HSP 1 Score: 90.9 bits (224), Expect = 8.970e-20
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   37 ALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHCNLNLVLCEVP 198
            ++C+ PVR LYVWCP C HGGHL H+ EWF Q   CPTGC HHC+LNLV+   P
Sbjct:  954 SICQLPVRGLYVWCPVCSHGGHLEHLAEWFAQEHVCPTGCSHHCSLNLVMSMNP 1007
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: UPI0001EFC84D (WD repeat-containing protein 24 n=1 Tax=Trichinella spiralis TaxID=6334 RepID=UPI0001EFC84D)

HSP 1 Score: 87.4 bits (215), Expect = 2.780e-19
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    4 CEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHC 168
            C  C + L  C++CE+ +R L++WCPGC HGGHL+H+  WF   S+CPTGCGH C
Sbjct:  220 CNTCQRPLQNCSVCEETIRGLFLWCPGCMHGGHLNHIESWFRSHSSCPTGCGHKC 274
[Close]
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Match: A0A2R5L573_9ACAR (GATOR complex protein WDR24 (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A2R5L573_9ACAR)

HSP 1 Score: 89.0 bits (219), Expect = 4.240e-19
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    4 CEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPTGCGHHC 168
            C++C      CA+C +PVR LY+WC GC HGGH+HHM EWF +   CP+GCGH C
Sbjct:  749 CDRCKALAGACAVCHEPVRGLYIWCQGCCHGGHIHHMREWFQKWKMCPSGCGHLC 803
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168448 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNQ5_9STRA1.310e-49100.00WD repeat-containing protein 24 n=1 Tax=Tribonema ... [more]
I2CPR4_NANGC5.790e-2566.07Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S0K0D3_CAFRO8.580e-2356.25Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A4D9DDY3_9STRA1.770e-2266.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2R5GG06_9STRA1.570e-2160.00GATOR complex protein WDR24 n=1 Tax=Hondaea fermen... [more]
A0A1X2GBD5_9FUNG3.960e-2161.40WD40 repeat-like protein n=1 Tax=Hesseltinella ves... [more]
A0A7S2R7E5_9STRA6.580e-2057.89Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
K3X200_GLOUD8.970e-2062.96Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI0001EFC84D2.780e-1954.55WD repeat-containing protein 24 n=1 Tax=Trichinell... [more]
A0A2R5L573_9ACAR4.240e-1956.36GATOR complex protein WDR24 (Fragment) n=2 Tax=Orn... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:285855..286055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168448|e_gw1.58.44.1
BRITEko00000,ko00001
KEGG Pathwayko04150,map04150
KEGG koko:K20408
DescriptionAnaphase-promoting complex subunit 4 WD40 domain
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGsKOG0269@1|root,KOG0269@2759|Eukaryota,3QA2A@4776|Peronosporales
Evalue1.88e-22
Seed ortholog4787.PITG_06945T0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005460.1
TranscriptId168770
TrackFilteredModels1
ProteinId168448
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168448gene_9390Tribonema minus UTEX_B_3156 geneContig_58 285855..286055 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9390_1exon_9390_1Tribonema minus UTEX_B_3156 exonContig_58 285855..286055 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9390CDS_9390Tribonema minus UTEX_B_3156 CDSContig_58 285855..286055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168448Trimin1|168448|e_gw1.58.44.1Tribonema minus UTEX_B_3156 polypeptideContig_58 285855..286055 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9390 ID=mRNA_9390|Name=jgi.p|Trimin1|168448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_58:285855..286055+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGTGTGAGAAGTGTGCCCAAGCACTGAGCCGCTGTGCACTGTGCGAGCA
GCCCGTGCGCAGTCTTTATGTTTGGTGCCCAGGCTGCGGTCACGGAGGCC
ATCTACATCACATGCATGAATGGTTCACACAGGCTTCGGCGTGCCCGACT
GGATGCGGGCACCACTGCAACCTGAACCTTGTGCTATGCGAGGTGCCATG
A
back to top

protein sequence of jgi.p|Trimin1|168448

>Trimin1|168448|e_gw1.58.44.1 ID=Trimin1|168448|e_gw1.58.44.1|Name=jgi.p|Trimin1|168448|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
RCEKCAQALSRCALCEQPVRSLYVWCPGCGHGGHLHHMHEWFTQASACPT
GCGHHCNLNLVLCEVP*
back to top

mRNA from alignment at Contig_58:285855..286055+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9390 ID=mRNA_9390|Name=jgi.p|Trimin1|168448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_58:285855..286055+ (Tribonema minus UTEX_B_3156 )
AGGTGTGAGAAGTGTGCCCAAGCACTGAGCCGCTGTGCACTGTGCGAGCA
GCCCGTGCGCAGTCTTTATGTTTGGTGCCCAGGCTGCGGTCACGGAGGCC
ATCTACATCACATGCATGAATGGTTCACACAGGCTTCGGCGTGCCCGACT
GGATGCGGGCACCACTGCAACCTGAACCTTGTGCTATGCGAGGTGCCATG
A
back to top

Coding sequence (CDS) from alignment at Contig_58:285855..286055+

>mRNA_9390 ID=mRNA_9390|Name=jgi.p|Trimin1|168448|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_58:285855..286055+ (Tribonema minus UTEX_B_3156 )
AGGTGTGAGAAGTGTGCCCAAGCACTGAGCCGCTGTGCACTGTGCGAGCA
GCCCGTGCGCAGTCTTTATGTTTGGTGCCCAGGCTGCGGTCACGGAGGCC
ATCTACATCACATGCATGAATGGTTCACACAGGCTTCGGCGTGCCCGACT
GGATGCGGGCACCACTGCAACCTGAACCTTGTGCTATGCGAGGTGCCATG
A
back to top