mRNA_9389 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168533
Unique NamemRNA_9389
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: A0A835YP21_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP21_9STRA)

HSP 1 Score: 456 bits (1173), Expect = 1.730e-162
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 
Query:    1 METSAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPSHHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
            METSAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPSHHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR
Sbjct:    1 METSAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPSHHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 221
[Close]
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: A0A5D6XR99_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR99_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.580e-60
Identity = 106/221 (47.96%), Postives = 147/221 (66.52%), Query Frame = 1 
Query:   10 SAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPS---HHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
            S GV A +D   PL +L  SPN ++ AVG RDV+KV+ L   GFAE + L +  K S+ FS  D+ W      ++A A  NG +V+W++      H  ERV+  H+R VNR+ WH ++  +L+S S D +IK+WD+RG+  +   T++P+SE+VRDV+ SPF PHRFAAAFENG +QVWD RK +QPQLK  AH   ++A+DWHP R  V+A+G RDR V+
Sbjct:    3 SRGVRASIDFSGPLNALSTSPNNRFVAVGGRDVLKVVALETAGFAEKRNLRVG-KASLNFSTNDIRWHPHADSVLATAATNGAVVIWNLQREGFKHVQERVLTGHRRAVNRICWHTTDWNVLISGSQDGTIKIWDKRGKVTN---TYQPKSESVRDVRMSPFDPHRFAAAFENGIVQVWDIRKNAQPQLKFTAHKGLVLALDWHPTRPHVLASGGRDRYVK 219
[Close]
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: A0A6A3M4F6_9STRA (ANAPC4_WD40 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3M4F6_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.410e-57
Identity = 102/224 (45.54%), Postives = 142/224 (63.39%), Query Frame = 1 
Query:    1 METSAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPS---HHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
            M     V A +D   PL +L  SPN +  AVG RDV+KV+ L   GF+E + L +  K S+ FS  D+ W      L+A A  NG +V+W++      H  ERV+  H+R VNR+ WH ++  +L+S S D ++KLWD+RG       T++P+SE+VRDV+ SPF P++FAAAFENG +QVWD RK SQP+LK  AH   +++IDWHP    V+A+G RDR V+
Sbjct:    1 MMEQRSVRASMDFNGPLNALSTSPNNRLIAVGGRDVLKVVALEAAGFSEKRNLRVAGKPSLNFSTNDIRWHPQSDSLLATAATNGAVVIWNLEREGYKHVQERVLNGHRRAVNRICWHTTDWNVLISGSQDGTVKLWDKRGGK--VVSTYQPKSESVRDVRASPFHPNKFAAAFENGIVQVWDMRKNSQPELKFTAHKGLVLSIDWHPTDANVLASGGRDRYVK 222
[Close]
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: G4YXX7_PHYSP (ANAPC4_WD40 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YXX7_PHYSP)

HSP 1 Score: 204 bits (518), Expect = 6.330e-57
Identity = 102/223 (45.74%), Postives = 144/223 (64.57%), Query Frame = 1 
Query:    4 ETSAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPS---HHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
              +A V A +D   PL +L  SPN +  AVG RDV+KV+ L   GF+E + L +  K S+ FS  D+ W      L+A A  NG +V+W++      H  ERV+  H+R+VNR+ WH ++  +L+S S D ++KLWD+RG       T++P+SE+VRDV+ SPF P++FAAAFENG +QVWD RK SQP+LK  AH   +++IDWHP    V+A+G RDR V+
Sbjct:    4 RAAASVRASMDFSGPLNALSTSPNNRLIAVGGRDVLKVVALEAAGFSEKRNLRVAGKPSLNFSTNDIRWHPQSDYLLATAATNGAVVIWNLEREGYKHVQERVLNGHRRSVNRICWHTTDWNVLISGSQDGTVKLWDKRGGK--VVSTYQPKSESVRDVRASPFHPNKFAAAFENGIVQVWDMRKNSQPELKFTAHKGLVLSIDWHPTDANVLASGGRDRYVK 224
[Close]
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: A0A0P1AC50_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AC50_PLAHL)

HSP 1 Score: 204 bits (518), Expect = 6.780e-57
Identity = 102/222 (45.95%), Postives = 145/222 (65.32%), Query Frame = 1 
Query:    7 TSAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPSHHS---ERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
            T+A V A ++   PL +L LSPN +  AVG RDV+KV+ L   GF E + L +  K S+ FS  D+ W      L+A A  NG +V+W++    +    ERV+  H+R VNR+ WH S+  +L+S S D ++KLWD+RG      +T++P+SE+VRDV+ SPF P++FAAAFENG +QVWD RK +QP+LK  AH   +++IDWHP    V+A+G RDR V+
Sbjct:    5 TAASVRASMEFNGPLNALSLSPNNRLVAVGGRDVLKVVALEASGFTEKRNLRVVGKPSLNFSTNDIRWHPHSDYLLATAATNGAVVIWNLEREGYKYVQERVLNGHRRAVNRICWHTSDWNILISGSQDGTVKLWDKRGGK--VMLTYQPKSESVRDVRASPFHPNKFAAAFENGIVQVWDMRKNAQPELKFTAHKGLVLSIDWHPTDANVLASGGRDRYVK 224
[Close]
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: A0A225WIZ9_9STRA (ANAPC4_WD40 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WIZ9_9STRA)

HSP 1 Score: 203 bits (517), Expect = 9.050e-57
Identity = 103/220 (46.82%), Postives = 141/220 (64.09%), Query Frame = 1 
Query:   13 AGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPS---HHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
            A V A +D   PL +L  SPN +  AVG RDV+KV+ L   GF E + L +  K S+ FS  D+ W      L+A A  NG +V+W++      H  ERV+  H+R VNR+ WH ++  +L+S S D ++KLWD+RG       T++P+SE+VRDV+ SPF P++FAAAFENG +QVWD RK SQP+LK  AH   +++IDWHP    VIA+G RDR V+
Sbjct:    7 ASVRASMDFNGPLNALSTSPNNRLIAVGGRDVLKVVALEASGFTEKRNLRVAGKPSLNFSTNDIRWHPQSDYLLATAATNGAVVIWNLEREGYKHVQERVLNGHRRAVNRICWHTTDWNVLISGSQDGTVKLWDKRGGK--VVSTYQPKSESVRDVRASPFHPNKFAAAFENGIVQVWDMRKNSQPELKFTAHKGLVLSIDWHPTDANVIASGGRDRYVK 224
[Close]
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: A0A024GBD5_9STRA (Uncharacterized protein n=7 Tax=Albugo candida TaxID=65357 RepID=A0A024GBD5_9STRA)

HSP 1 Score: 197 bits (502), Expect = 6.210e-55
Identity = 99/238 (41.60%), Postives = 150/238 (63.03%), Query Frame = 1 
Query:    4 ETSAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPSHH------------------SERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
            ++++ V + +D   PL +L +SPN +  AVG RDV++++ L   GF+E + L    K S+ FS  D+ W    + L+A A  NG +V+W++    +                  SERV+  H+R VNR+ WHP++  LL+S S D +IKLWD+RG+  +    ++PRSE+VRDV+FS FQP+RFAAAFENG +Q+WD RK + P+LK  AH   ++++DWHP R  ++A+G RDR V+
Sbjct:   11 KSASSVRSSVDFNGPLNALAISPNNKLVAVGGRDVLRIMALEAMGFSEKRNLR-AGKSSLNFSTNDIRWHPQSNHLLATAATNGVVVIWNLQKDGYKHVQGTFCDRNRHCIDSVSERVLNGHRRAVNRICWHPTDWNLLVSGSQDGTIKLWDKRGKAGN---VYQPRSESVRDVRFSHFQPNRFAAAFENGIIQIWDIRKNAHPELKFTAHKGLVLSVDWHPNRSNIVASGGRDRYVK 244
[Close]
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: M4BGE8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGE8_HYAAE)

HSP 1 Score: 197 bits (502), Expect = 7.450e-55
Identity = 98/221 (44.34%), Postives = 141/221 (63.80%), Query Frame = 1 
Query:   10 SAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPS---HHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
            ++ V A +D   PL +L  SPN +  AVG RDV+KV+ L   GF E + L +  K S+ FS  D+ W    + L+A A  NG + +W++      H  ERV+  H+R VNR+ WH ++  +L+S S D ++KLWD+RG       T++P+SE+VRDV+ SPF P++FAAAFENG +QVWD RK +QP+LK  AH   ++ +DWHP    V+A+G RDR V+
Sbjct:    2 ASSVRASMDFNGPLNALSTSPNNRLIAVGGRDVLKVVALEASGFTEKRNLRVVGKPSLNFSTNDIRWHPHSAYLLATAATNGAVGIWNLERDGYKHVQERVLNGHRRAVNRICWHTTDWNVLISGSQDGTVKLWDKRGGK--VVSTYQPKSESVRDVRASPFHPNKFAAAFENGIVQVWDMRKNTQPELKFTAHKGLVLTVDWHPTNANVLASGGRDRYVK 220
[Close]
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: D0N6V5_PHYIT (ANAPC4_WD40 domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=D0N6V5_PHYIT)

HSP 1 Score: 197 bits (500), Expect = 1.520e-54
Identity = 101/223 (45.29%), Postives = 139/223 (62.33%), Query Frame = 1 
Query:    4 ETSAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPS---HHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
              +A V A +D   PL +L  SPN +  AVG RDV+KV+ L   GF E + L +  K S+ FS  D+ W      L+A A  NG +V+W++      H  ERV   H+R VNR+ WH S+  +L+S S D ++KLWD+RG       T++P+SE+VRDV+ SPF  ++FAAAFENG +QVWD RK SQ +LK  AH   +++IDWHP    V+A+G RDR V+
Sbjct:    4 RAAASVRASMDFNGPLNALSTSPNNRLIAVGGRDVLKVVALEASGFTEKRNLRVVGKPSLNFSTNDIRWHPHSDYLLATAATNGAVVIWNLERDGYKHVQERVFNGHRRAVNRICWHTSDWNVLISGSQDGTVKLWDKRGGK--VVSTYQPKSESVRDVRASPFHSNKFAAAFENGIVQVWDMRKNSQAELKFTAHKGLVLSIDWHPTDANVLASGGRDRYVK 224
[Close]
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Match: A0A3M6VR55_9STRA (ANAPC4_WD40 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VR55_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.310e-54
Identity = 100/220 (45.45%), Postives = 139/220 (63.18%), Query Frame = 1 
Query:   13 AGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEVKTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPS---HHSERVMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPRSEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMAIDWHPMRDWVIATGSRDRTVR 663
            A V A +D   PL +L  SPN    AVG RDV+KV+ L   GF E + L +  K S+ FS  D+ W      L+A A  NG +V+W++      H  ERV+  H+R VNR+ WH ++  +L+S S D ++KLWD+RG       T++P+SE+VRDV+ SPF  ++FAAAFENG +QVWD RK +QP+LK  AH   +++IDWHP    V+A+G RDR V+
Sbjct:    9 ASVRASMDFNGPLNALSTSPNNHLIAVGGRDVLKVVALEAAGFTEKRNLRVIGKPSLNFSTNDIRWHPHSDYLLATAATNGAVVIWNLERDGYKHVQERVLNGHRRAVNRICWHTTDWNVLISGSQDGTVKLWDKRGGK--VVSTYQPKSESVRDVRASPFHSNKFAAAFENGIVQVWDMRKNTQPELKFTAHKGLVLSIDWHPTDANVLASGGRDRYVK 226
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168533 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YP21_9STRA1.730e-162100.00WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A5D6XR99_9STRA3.580e-6047.96Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A3M4F6_9STRA1.410e-5745.54ANAPC4_WD40 domain-containing protein n=1 Tax=Phyt... [more]
G4YXX7_PHYSP6.330e-5745.74ANAPC4_WD40 domain-containing protein n=4 Tax=Phyt... [more]
A0A0P1AC50_PLAHL6.780e-5745.95Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A225WIZ9_9STRA9.050e-5746.82ANAPC4_WD40 domain-containing protein n=1 Tax=Phyt... [more]
A0A024GBD5_9STRA6.210e-5541.60Uncharacterized protein n=7 Tax=Albugo candida Tax... [more]
M4BGE8_HYAAE7.450e-5544.34Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
D0N6V5_PHYIT1.520e-5445.29ANAPC4_WD40 domain-containing protein n=20 Tax=Phy... [more]
A0A3M6VR55_9STRA2.310e-5445.45ANAPC4_WD40 domain-containing protein n=1 Tax=Pero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:263519..265706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168533|e_gw1.58.29.1
DescriptionWD repeat
COG categoryS
Max annot lvl121069|Pythiales
EggNOG OGsKOG0269@1|root,KOG0269@2759|Eukaryota,1MF7Z@121069|Pythiales
Evalue6.4e-59
Seed ortholog115417.EPrPW00000015325
Hectar predicted targeting categoryother localisation
TranscriptId168855
TrackFilteredModels1
ProteinId168533
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168533gene_9389Tribonema minus UTEX_B_3156 geneContig_58 263519..265706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168533Trimin1|168533|e_gw1.58.29.1Tribonema minus UTEX_B_3156 polypeptideContig_58 263519..265706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9389_1exon_9389_1Tribonema minus UTEX_B_3156 exonContig_58 263519..263709 +
exon_9389_2exon_9389_2Tribonema minus UTEX_B_3156 exonContig_58 264551..264635 +
exon_9389_3exon_9389_3Tribonema minus UTEX_B_3156 exonContig_58 264702..264956 +
exon_9389_4exon_9389_4Tribonema minus UTEX_B_3156 exonContig_58 265147..265249 +
exon_9389_5exon_9389_5Tribonema minus UTEX_B_3156 exonContig_58 265675..265706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9389CDS_9389Tribonema minus UTEX_B_3156 CDSContig_58 263519..263709 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9389 ID=mRNA_9389|Name=jgi.p|Trimin1|168533|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_58:263519..265706+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACCAGTGCAGGCGTAGTGGCAGAGCTGGACCTAGGGTGTCCTCT
GACTAGTCTTTGCCTTTCCCCTAATCTTCAATACTGCGCAGTTGGCGCGA
GGGATGTGGTCAAAGTGCTGGACCTCGGGCCGGAGGGGTTCGCTGAGGTC
AAAACACTCAGTATTACGACTAAGGGCAGCATAAAGTTCAGCATCACAGA
TGTGTCCTGGTCAGCGATGGATTCAGGCCTGGTGGCGGCCGCCATGAACA
ACGGTGGCATTGTGGTCTGGGATGTGCTGCCCAGCCATCATAGCGAACGG
GTGATGGTGGAACATCAACGCACTGTCAACCGTGTCGCGTGGCATCCCAG
TGAGCCAGCACTGCTGTTGAGCTGTTCCATGGACAACTCCATAAAGCTGT
GGGACAGACGAGGGCGCACACATCACTGTGCAGTTACATTCAGGCCGCGC
AGTGAGGCGGTGCGGGATGTTCAGTTTTCGCCATTTCAACCACACCGCTT
TGCCGCCGCTTTTGAGAATGGACAGCTACAGGTGTGGGACCGGCGCAAGG
TATCACAGCCGCAGCTTAAGATCATGGCACACTCACAGCCCATCATGGCG
ATTGACTGGCATCCCATGCGTGACTGGGTCATAGCCACGGGCAGTCGCGA
CAGGACGGTAAGATGA
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protein sequence of jgi.p|Trimin1|168533

>Trimin1|168533|e_gw1.58.29.1 ID=Trimin1|168533|e_gw1.58.29.1|Name=jgi.p|Trimin1|168533|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
METSAGVVAELDLGCPLTSLCLSPNLQYCAVGARDVVKVLDLGPEGFAEV
KTLSITTKGSIKFSITDVSWSAMDSGLVAAAMNNGGIVVWDVLPSHHSER
VMVEHQRTVNRVAWHPSEPALLLSCSMDNSIKLWDRRGRTHHCAVTFRPR
SEAVRDVQFSPFQPHRFAAAFENGQLQVWDRRKVSQPQLKIMAHSQPIMA
IDWHPMRDWVIATGSRDRTVR*
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mRNA from alignment at Contig_58:263519..265706+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9389 ID=mRNA_9389|Name=jgi.p|Trimin1|168533|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2188bp|location=Sequence derived from alignment at Contig_58:263519..265706+ (Tribonema minus UTEX_B_3156 )
ATGGAAACCAGTGCAGGCGTAGTGGCAGAGCTGGACCTAGGGTGTCCTCT
GACTAGTCTTTGCCTTTCCCCTAATCTTCAATACTGCGCAGTTGGCGCGA
GGGATGTGGTCAAAGTGCTGGACCTCGGGCCGGAGGGGTTCGCTGAGGTC
AAAACACTCAGTATTACGACTAAGGGCAGCATAAAGTTCAGGTGAGGTAG
AGGCACCTAATGGTGATCAGCAAGTGCGAGCGTCACGTTGTGTAATTTCT
TTCTTTGCTTGAATCAATACATGTATTTTTTTAGACTGAATACTACAGCA
TTTTCAACAACGCTTTTGTGGCACACTTTTCAGCTTTGCATCACCACTTC
CTGATAATACGGCTCCAGCGGACAGGCAATATGTCCAACAGCGCTTGACA
CAAGATGTGTAGAGTGAATGAATTTGTCAAGTGCCAGTGCACTGCCAGGT
TGTTTGATACATGACATGTATGTGTGCTGGATAATGCCAACCATTGAATT
GAAAAGCTGCAAAGCACGTTGCCAACAGTGCCTATTCATATGTGGCATGA
ACACTTCCAGGCTCGACAACGCTGGTGGCAGAAGAAAATAACTCACAAGA
TGTATTGAGACAGGTCATTTGTCAGGTGCCAGTGCACTGCCAGGTCGCTT
GATACATGACATGCATGTGCTGATTTTATAATTTAAACCATTGAATTGAT
AAAAGGCGCAAAGCACCCTGCCAACAGTGCCTATTTATATATGGCATCAA
CACTTCCAGGCTCGCCAAAAGCTGTCAGCAGAAGAAAACAACGAAGCGCA
TTCTGCAAGTGTCCTGCAAAGCTGCTGAAAGTCGCACACACTGGCCTGTG
CGTGGTTAAGTGCTGAGCTCGCTGCCATCTATCAGTGTCCTGATTCATTG
CCATATAGCCTGACAAATGTTCAACCACCTTCCTCATTGATTGCCATATA
GCCCGGCAAGTGTGCAACCACCAGCTGCGGAGAGCTGAACAGTTTGTTTG
CTGCTGTAAACTCCGTCTGCATGCGTGCGCAGCATCACAGATGTGTCCTG
GTCAGCGATGGATTCAGGCCTGGTGGCGGCCGCCATGAACAACGGTGGCA
TTGTGGTCTGGGATGTGGTGCAGAACCGTCGCCCAAGCTTCCACGCAGGC
AGCGATGTGCTTGGCGGTATGCTCACAACACAGCTGCCCAGCCATCATAG
CGAACGGGTGATGGTGGAACATCAACGCACTGTCAACCGTGTCGCGTGGC
ATCCCAGTGAGCCAGCACTGCTGTTGAGCTGTTCCATGGACAACTCCATA
AAGCTGTGGGACAGACGAGGGCGCACACATCACTGTGCAGTTACATTCAG
GCCGCGCAGTGAGGCGGTGCGGGATGTTCAGTTTTCGCCATTTCAACCAC
ACCGCTTTGCCGCCGCTTTTGAGAATGGACAGCTACAGGTACGCGCATAT
GCGTGAGACAAAGCAGATGAGAAGCGGCAGACATATTCTGCAAGTTGCAG
CTGTCCGCCTGCAAAGTGTTATGCGGTCTAGCACTGAACGTGGACTGCAG
CATTGCGTCTCTTCCTGATATGCCCACATACCCTGATGTGTGCCACATTG
ATCTGCCATGTCGGATAATGACACACAGGTGTGGGACCGGCGCAAGGTAT
CACAGCCGCAGCTTAAGATCATGGCACACTCACAGCCCATCATGGCGATT
GACTGGCATCCCATGCGTGACTGGGTCATAGGTATGTGGAATGGTGCATG
TCTGTGACTTGCATTGGCTTCCACAATGATTCAGCCATCATGGCACACTC
GCAGCCTATCGTGGCAATAGACTGGCATCCCATGCGTGCTTGGTTTGTCT
GAGACGCTGCATGTCTCTGAATTGCATAGACTAATCAATCAGATTGAGCT
ACAGTTCCGCTCTCATGTCAATGGAGAAATGATGAATGCGTTATGTGCTG
CATGCAACATGCAGCATCAAATGACATCCAATTGTGCAGTGGCATGCGCA
GCAGCAGCGCTGTACTCATCCAACACATTTGCTTCAAAACAAGTGGCTGA
TCTGAAGTCGACGCATGTTGTTCCCTGTAGACTCACTACATGTAGTGCAG
CACTGAATGTTCATTGTTCTGTTGCTTTTGTGGCGTCCGTTTGCACTCTA
CTGCAGCCACGGGCAGTCGCGACAGGACGGTAAGATGA
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Coding sequence (CDS) from alignment at Contig_58:263519..265706+

>mRNA_9389 ID=mRNA_9389|Name=jgi.p|Trimin1|168533|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_58:263519..265706+ (Tribonema minus UTEX_B_3156 )
ATGGAAACCAGTGCAGGCGTAGTGGCAGAGCTGGACCTAGGGTGTCCTCT
GACTAGTCTTTGCCTTTCCCCTAATCTTCAATACTGCGCAGTTGGCGCGA
GGGATGTGGTCAAAGTGCTGGACCTCGGGCCGGAGGGGTTCGCTGAGGTC
AAAACACTCAGTATTACGACTAAGGGCAGCATAAAGTTCAGCATCACAGA
TGTGTCCTGGTCAGCGATGGATTCAGGCCTGGTGGCGGCCGCCATGAACA
ACGGTGGCATTGTGGTCTGGGATGTGCTGCCCAGCCATCATAGCGAACGG
GTGATGGTGGAACATCAACGCACTGTCAACCGTGTCGCGTGGCATCCCAG
TGAGCCAGCACTGCTGTTGAGCTGTTCCATGGACAACTCCATAAAGCTGT
GGGACAGACGAGGGCGCACACATCACTGTGCAGTTACATTCAGGCCGCGC
AGTGAGGCGGTGCGGGATGTTCAGTTTTCGCCATTTCAACCACACCGCTT
TGCCGCCGCTTTTGAGAATGGACAGCTACAGGTGTGGGACCGGCGCAAGG
TATCACAGCCGCAGCTTAAGATCATGGCACACTCACAGCCCATCATGGCG
ATTGACTGGCATCCCATGCGTGACTGGGTCATAGCCACGGGCAGTCGCGA
CAGGACGGTAAGATGA
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