mRNA_9365 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168491
Unique NamemRNA_9365
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: A0A835YPP3_9STRA (Glucuronyl/N-acetylglucosaminyl transferase EXT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP3_9STRA)

HSP 1 Score: 594 bits (1532), Expect = 8.360e-215
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1 
Query:    1 MVIVLLAAYAIASHLLRLDFTELPVRETSFVPGDGGAVKQFSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPLISVEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATGQHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLWWFTR 879
            MVIVLLAAYAIASHLLRLDFTELPVRETSFVPGDGGAVKQFSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPLISVEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATGQHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLWWFTR
Sbjct:    1 MVIVLLAAYAIASHLLRLDFTELPVRETSFVPGDGGAVKQFSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPLISVEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATGQHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLWWFTR 293
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: A0A835YNL3_9STRA (Exostosin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNL3_9STRA)

HSP 1 Score: 276 bits (706), Expect = 6.960e-90
Identity = 133/231 (57.58%), Postives = 170/231 (73.59%), Query Frame = 1 
Query:  121 FSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPLISVEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATGQHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGG 813
            F+VR+NT++RN++LKRSV+  A CP+V  + IVWS+QEN+PPPL+FF+P AR LI  E HT +SLNNRF AL+ P TE VFS+DDD+LF+C+DL FA  TW+AA  TMVGF PRLVT D  TG+HRYRSWW+ W  GAYN+VLTKAAF HR +L+ Y + L  +  AYVDA RNC+D+AM+ ++A  + APP+WV     +LG    IS+S  H+  R  CLD F   LGG
Sbjct:    2 FTVRMNTFRRNDDLKRSVDNYALCPAVTRIQIVWSDQENEPPPLNFFSPAARELIEFELHTTDSLNNRFNALSPPPTEGVFSVDDDMLFKCEDLKFAHQTWRAASETMVGFVPRLVTRDEETGEHRYRSWWFTWWNGAYNLVLTKAAFLHRKHLDAYMT-LPPKMLAYVDAHRNCEDIAMSMVVARDTRAPPLWVRGAIRELGAPG-ISSSGGHYRARCACLDAFAQVLGG 230
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: A0A6H5JBU8_9PHAE (GT64 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBU8_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 3.450e-68
Identity = 111/258 (43.02%), Postives = 154/258 (59.69%), Query Frame = 1 
Query:   40 HLLRLDFTELPVRETSFVPGDGGAVKQ-FSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPLISVEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATGQHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLG 810
            HL  +D   + V       G G +++  F+VR+NT++RN+ LKRS E +A C  V  + +VWS+QEN PP +D F    R  +  E H  NSL++RF   +   T+ VFS DDD+   C DL F F+TW+A++ TMVGF PRLVT D  TG+H YRSW  V   G YN++LTK  F HRD+L TY   ++    AY+D  RNC+D+AM+ ++A     PP+WV     ++G  + IS    HF  R  C+DFF  + G
Sbjct:   75 HLFSIDVGAVLVENG----GSGSSIENTFTVRMNTFRRNDLLKRSAEHLASCDCVGQIQVVWSDQENAPPSMDLFTERTRRKVVFEVHDTNSLSHRFNVTSTLGTDGVFSTDDDLEISCADLKFGFETWRASQNTMVGFSPRLVTRDPGTGRHSYRSWRVVRWNGVYNVILTKCCFLHRDHLRTYVDEMTAPLLAYIDEHRNCEDIAMSVVVAKFHKTPPVWVGGRVKEIG-GDGISGLAHHFDARSNCVDFFAEEFG 327
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: A0A7R9UDH5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDH5_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.900e-63
Identity = 108/253 (42.69%), Postives = 158/253 (62.45%), Query Frame = 1 
Query:  121 FSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPH-ARPLISVEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATGQHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGA-PPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGG--ASPFRTAQFKAVRAKRLW 867
            +S+R+NT++RN+ L+RS+E  +KC ++  + +VWS+QEN PP +  +     +P +  E H V+ L+NRF+ L  P TEA+ S+DDD++ RC+ L+ A + W++AKG++VGF PR+ T D+ T  +RYRSWWY +  G Y+++LTK+AF HR YLE  F  L      YVD  RNC+D+ MA ++A  SG  PP+WV A   D G    IS+   HF  R  C++ F A+ G     P    + K V A R W
Sbjct:   67 YSMRINTFRRNDLLRRSIEHYSKCSNIEDIIVVWSDQENPPPDISKWQLRPTKPHVEFEVHAVDRLSNRFKPLKMPATEAILSIDDDIIIRCEHLSRAMEVWESAKGSLVGFSPRMHTWDKQTRSYRYRSWWYTYWNGYYSIMLTKSAFLHRKYLEA-FHALPASLVDYVDGNRNCEDILMAFVVAKESGGKPPLWVGAPAIDDG-DGGISSGTTHFDHRSECINIF-AKSGHFQGMPLVITKAKVVDATREW 316
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: A0A0A0KQG7_CUCSA (Glyco_transf_64 domain-containing protein n=4 Tax=Cucumis TaxID=3655 RepID=A0A0A0KQG7_CUCSA)

HSP 1 Score: 209 bits (531), Expect = 3.160e-63
Identity = 105/258 (40.70%), Postives = 155/258 (60.08%), Query Frame = 1 
Query:  133 VNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPLISVEKHTV-------------NSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATGQHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLW 867
            +NT+KR++ LK+S++    C  V S+ IVWSE     PP D    + +  +                    +SLNNRF+ +    TEA+FS+DDDV+F C  L FAF  W+ A  TMVGF PR+  +DR+ G++RY  WW VW +G Y+MVL+KAAFFH  YL+ Y + +    R Y+   RNC+D+AM+ ++A++SG+PP+WV+    ++G ++ IS+   H   R +CL+ FV + GG  P   +  KAV A+RLW
Sbjct:    1 MNTWKRHDLLKKSIDHYTACIGVESIHIVWSEPS---PPPDSLVSYLQRTVKANSRDGRETELRFEMNEEDSSLNNRFKEIKGLKTEAIFSVDDDVIFACSTLEFAFSVWQTAPHTMVGFVPRMHWIDRSKGRYRYGGWWSVWWSGTYSMVLSKAAFFHSKYLDFYTNHMPSSIRHYITNNRNCEDIAMSFVVANLSGSPPVWVQGKIYEVG-SSGISSLGGHSERRSQCLNIFVEEYGGIMPLLPSTLKAVDARRLW 254
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: A0A6J1JG04_CUCMA (glycosyltransferase family 64 protein C4 n=4 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JG04_CUCMA)

HSP 1 Score: 209 bits (531), Expect = 2.680e-62
Identity = 111/267 (41.57%), Postives = 161/267 (60.30%), Query Frame = 1 
Query:  115 KQFSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPL-----------ISVEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRAT---GQHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLWWF 873
            K++++ +NT+KR++ LK+SV     C  V S+ IVWSE   DPPP    A   R +           +  E +  +SLNNRF+ +    T+A+FS+DDDV+F C  L FAF  W++A  TMVGF PR+  +D+A    G++ Y  WW VW TG Y+MVL+KAAFFH  YL  Y   +    R YV   RNC+D+AM+ ++A+VSGAPP+WV+    ++G +  IS+   H   RG+C++ FV + GG  P   +  KAV  + LW++
Sbjct:   65 KRYAILMNTWKRHDLLKQSVSHYTTCMGVESIHIVWSEP--DPPPDSLVAFLQRTVKENSRNDREIKLRFEMNEEDSLNNRFKEIKDLNTDAIFSVDDDVIFACSTLEFAFTVWQSASETMVGFVPRMHWIDQAKEEMGRYIYGGWWSVWWTGTYSMVLSKAAFFHSKYLGIYTHHMPASIRNYVTKNRNCEDIAMSFVVANVSGAPPVWVKGRIYEIG-SGGISSLGGHSERRGKCVNTFVEEYGGMMPLVPSTVKAVDGRHLWFW 328
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: UPI0019023D83 (glycosyltransferase family 64 protein C4 n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019023D83)

HSP 1 Score: 208 bits (530), Expect = 3.790e-62
Identity = 109/263 (41.44%), Postives = 156/263 (59.32%), Query Frame = 1 
Query:  115 KQFSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPLIS---------VEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATGQ---HRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLW 867
            K++++ +NT+KR + LK+S+     C  V S+ IVWSE    P  L  F        S          E +  +SLNNRF+ +    TEA+FS+DDDV+F C  L FAF  W++A  TMVGF PR+  +DR+ G+    RY  WW VW TG Y+MVL+KAAFFH  YL  Y + +    R Y+   RNC+D+AM+ L+A+VSGAPP+WV+    ++G ++ IS+   H   R +CL+ FV + GG  P   +  KAV +++ W
Sbjct:   65 KRYAILMNTWKRYDLLKKSISHYTTCLGVESIHIVWSEPAPPPVSLVSFLQGTAKANSRDGREAELRFEMNEEDSLNNRFKEIKGLKTEAIFSVDDDVIFGCSTLEFAFSVWQSAPQTMVGFVPRMHWIDRSKGEMGRFRYGGWWSVWWTGTYSMVLSKAAFFHSKYLSIYTNHMPSSIRDYITKNRNCEDIAMSFLVANVSGAPPVWVQGKIYEIG-SSGISSLGGHSERRSQCLNIFVEEYGGIMPLLPSTLKAVDSRQFW 326
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: UPI0019D67716 (glycosylinositol phosphorylceramide mannosyl transferase 1-like n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D67716)

HSP 1 Score: 209 bits (531), Expect = 4.720e-62
Identity = 121/293 (41.30%), Postives = 170/293 (58.02%), Query Frame = 1 
Query:   13 LLAAYAIASHLLRLDFTELPVRETSFVPGDGGAVKQFSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLD---FFAPHARPLISVEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATG---QHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLWWF 873
            LLA  A A+ L      + P  + + V G   + + FSV +NT++R+  L+RSV   A C  V ++ +VWSE    P  L          R  +  E +  +SLNNRFR +    T+AVFS+DDD++  C  L FAFD W++A   MVGF PR+  L    G   ++RY SWW VW TG Y+MVL+KA+FFHR YL+ Y + +    R YVD  RNC+D+AM+ L+A+ SGAPPIWV+    ++G T  IS+ + H  +R RCL+ F A  G   P      KAV ++R W++
Sbjct:   60 LLAVAAAATTLAVALHRQSP--DPAAVAGPAASPRGFSVVINTWRRHALLRRSVAHYAACAGVEAVHVVWSEPRPPPETLRRGVLVNGTRRGTVRFEINEADSLNNRFRPIRSLGTDAVFSVDDDLIVPCSTLRFAFDVWQSAPSAMVGFVPRMHWLADPRGSTKEYRYGSWWSVWWTGTYSMVLSKASFFHRQYLDLYTNNMLPSIRKYVDENRNCEDIAMSFLVANHSGAPPIWVQGRIFEIGSTG-ISSLKGHSLQRSRCLNTFAAMYGHM-PLVATTVKAVDSRRSWFW 348
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: UPI0011D27F37 (glycosyltransferase family 64 protein C4 isoform X1 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D27F37)

HSP 1 Score: 207 bits (526), Expect = 1.600e-61
Identity = 112/264 (42.42%), Postives = 162/264 (61.36%), Query Frame = 1 
Query:  115 KQFSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPLISVEKHTV---------NSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRATGQHRY--RSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLWWF 873
            K F++ +NT+KRN+ LK+S+   A+C S+ S+ IVWSE +     L  F  H   L S     V         +SLNNRF+ +T   T+AVFS+DDDV+F C  + FAFD W++A  TMVGF PR+  +D+     RY    WW VW TG Y+MVL+KAAFFH+ YL+ Y + +    R YV   RNC+D+AM+ L+A+V+GAPPIWV+    ++G T  IS+   H  +R +C++ FVA+    +   T   KAV ++ +W++
Sbjct:   69 KGFALLINTWKRNDLLKQSIAHYARCSSLDSIHIVWSEPDPPSESLKKFLNHVIQLNSKSDRRVELKFDINKEDSLNNRFKPITDLKTDAVFSIDDDVIFPCSSVEFAFDVWRSAPDTMVGFVPRIHWIDQKGSADRYVYGGWWSVWWTGTYSMVLSKAAFFHKKYLDIYTNQMPASIREYVSRNRNCEDIAMSFLVANVTGAPPIWVKGKIFEIGSTG-ISSLGGHSEKRTQCVNRFVAEFRRMALVSTT-VKAVDSRNIWFW 330
[Close]
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Match: I2CQR6_NANGC (Glucuronyl/N-acetylglucosaminyl transferase EXT2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CQR6_NANGC)

HSP 1 Score: 207 bits (527), Expect = 3.240e-61
Identity = 125/322 (38.82%), Postives = 175/322 (54.35%), Query Frame = 1 
Query:   13 LLAAYAIASHLLRLDFTELPVR-ETSFVPGD---GGAV-KQFSVRVNTYKRNENLKRSVEVVAKCPSVASLTIVWSEQENDPPPL-DFFAPHARPLIS---VEKHTVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVGFHPRLVTLDRAT--------------------------GQHRY-RSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSVLSDEARAYVDATRNCDDVAMAALIA-HVSGAPPIWVEADTSDLGVTNAISASRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLW 867
            L A + +   LL L  T L +     F+P     GG     +++RVNT++RN+ LKR +   A+CP+V ++ ++WS+Q  DPP L D+  P +   +S    E    +SLNNRFRAL    T AV S+DDD++  C+ L FA+  W+AA  ++VGF PRLVT D  T                          G +RY  S+ +VW  G YN++LTK  F HRD+L  YFS L+ E   Y+D  RNC+D+AM  ++A H  GAPP+WV+A  +D G  + IS   DH  ERG C+   V + G      T   KA+ A+R W
Sbjct:   46 LFAVFIVGCLLLHLSHTALQMNFRVDFLPTTSPTGGPFGSTYTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQELSKVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPXXGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLC-LTTTSLKAIDARRSW 366
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168491 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPP3_9STRA8.360e-215100.00Glucuronyl/N-acetylglucosaminyl transferase EXT2 n... [more]
A0A835YNL3_9STRA6.960e-9057.58Exostosin (Fragment) n=1 Tax=Tribonema minus TaxID... [more]
A0A6H5JBU8_9PHAE3.450e-6843.02GT64 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A7R9UDH5_9STRA1.900e-6342.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0A0KQG7_CUCSA3.160e-6340.70Glyco_transf_64 domain-containing protein n=4 Tax=... [more]
A0A6J1JG04_CUCMA2.680e-6241.57glycosyltransferase family 64 protein C4 n=4 Tax=C... [more]
UPI0019023D833.790e-6241.44glycosyltransferase family 64 protein C4 n=1 Tax=B... [more]
UPI0019D677164.720e-6241.30glycosylinositol phosphorylceramide mannosyl trans... [more]
UPI0011D27F371.600e-6142.42glycosyltransferase family 64 protein C4 isoform X... [more]
I2CQR6_NANGC3.240e-6138.82Glucuronyl/N-acetylglucosaminyl transferase EXT2 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:115929..117369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168491|e_gw1.58.74.1
CAZyGT47,GT64
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko03012
KEGG ReactionR05930,R05935,R05936,R10138,R10139
KEGG ModuleM00059
KEGG Pathwayko00534,ko01100,map00534,map01100
KEGG koko:K02366,ko:K02367,ko:K02369,ko:K02370,ko:K04794,ko:K19033
EC2.4.1.223,2.4.1.224,2.4.1.225,3.1.1.29
GOsGO:0001101,GO:0001888,GO:0003674,GO:0003824,GO:0005488,GO:0005539,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006040,GO:0006044,GO:0006073,GO:0006139,GO:0006629,GO:0006643,GO:0006665,GO:0006725,GO:0006793,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008194,GO:0008219,GO:0008375,GO:0008376,GO:0009225,GO:0009664,GO:0009719,GO:0009725,GO:0009737,GO:0009888,GO:0009987,GO:0010033,GO:0010087,GO:0010383,GO:0010393,GO:0010395,GO:0010400,GO:0010401,GO:0012505,GO:0016020,GO:0016043,GO:0016740,GO:0016757,GO:0016758,GO:0017144,GO:0019276,GO:0023052,GO:0030145,GO:0030243,GO:0030968,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0033554,GO:0033993,GO:0034620,GO:0034641,GO:0034976,GO:0035248,GO:0035251,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0045488,GO:0046483,GO:0046527,GO:0046872,GO:0046914,GO:0047237,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051273,GO:0051716,GO:0052541,GO:0052546,GO:0055086,GO:0065007,GO:0070887,GO:0071310,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0097305,GO:0097367,GO:0097708,GO:0098791,GO:0098827,GO:1901071,GO:1901135,GO:1901360,GO:1901564,GO:1901700
Preferred nameEXTL2
Descriptionglucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1022@1|root,KOG1022@2759|Eukaryota
Evalue8.98e-68
Seed ortholog2880.D7FUU9
Hectar predicted targeting categorysignal peptide
TranscriptId168813
TrackFilteredModels1
ProteinId168491
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168491gene_9365Tribonema minus UTEX_B_3156 geneContig_58 115929..117369 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9365_1exon_9365_1Tribonema minus UTEX_B_3156 exonContig_58 115929..116503 +
exon_9365_2exon_9365_2Tribonema minus UTEX_B_3156 exonContig_58 117063..117369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9365CDS_9365Tribonema minus UTEX_B_3156 CDSContig_58 115929..116503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168491Trimin1|168491|e_gw1.58.74.1Tribonema minus UTEX_B_3156 polypeptideContig_58 115929..117369 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9365 ID=mRNA_9365|Name=jgi.p|Trimin1|168491|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=882bp|location=Sequence derived from alignment at Contig_58:115929..117369+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGATAGTCTTGCTCGCAGCATATGCTATCGCGTCGCATCTACTGCG
GCTCGATTTCACGGAGCTGCCTGTGCGGGAAACCAGCTTCGTGCCCGGCG
ACGGAGGCGCTGTCAAGCAATTCTCCGTCCGCGTCAACACCTACAAGCGT
AATGAGAACCTGAAGCGGTCGGTCGAAGTGGTCGCCAAATGCCCCTCTGT
AGCTTCTTTAACGATTGTGTGGAGCGAGCAGGAGAATGACCCACCACCTC
TGGACTTCTTCGCCCCTCACGCCCGGCCCCTGATTAGCGTGGAGAAGCAT
ACTGTCAACAGCCTCAACAACCGGTTCCGGGCGCTCACTCAGCCCACCAC
TGAGGCCGTATTCTCTATGGATGACGATGTGCTGTTTCGATGCCAGGACT
TGGCTTTTGCGTTTGACACATGGAAGGCTGCCAAGGGCACCATGGTGGGG
TTTCACCCTCGGCTCGTCACGCTGGACCGTGCGACAGGGCAACACCGCTA
CCGCTCTTGGTGGTACGTGTGGCGCACGGGGGCGTACAACATGGTGCTCA
CAAAGGCGGCCTTCTTCCACAGAGACTACCTGGAGACGTACTTCAGCGTC
CTCTCCGACGAGGCGCGCGCGTATGTCGACGCGACGCGCAACTGTGACGA
CGTCGCCATGGCAGCGCTCATCGCGCACGTCTCCGGCGCGCCCCCCATCT
GGGTCGAGGCCGACACGTCCGATCTCGGCGTCACCAACGCCATCAGCGCG
AGCCGCGACCACTTTGCGGAGCGCGGCCGCTGCCTCGACTTCTTCGTCGC
GCAGCTCGGCGGCGCGTCGCCGTTCCGGACCGCGCAGTTCAAGGCCGTGC
GCGCCAAGCGGCTGTGGTGGTTCACGCGGTGA
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protein sequence of jgi.p|Trimin1|168491

>Trimin1|168491|e_gw1.58.74.1 ID=Trimin1|168491|e_gw1.58.74.1|Name=jgi.p|Trimin1|168491|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MVIVLLAAYAIASHLLRLDFTELPVRETSFVPGDGGAVKQFSVRVNTYKR
NENLKRSVEVVAKCPSVASLTIVWSEQENDPPPLDFFAPHARPLISVEKH
TVNSLNNRFRALTQPTTEAVFSMDDDVLFRCQDLAFAFDTWKAAKGTMVG
FHPRLVTLDRATGQHRYRSWWYVWRTGAYNMVLTKAAFFHRDYLETYFSV
LSDEARAYVDATRNCDDVAMAALIAHVSGAPPIWVEADTSDLGVTNAISA
SRDHFAERGRCLDFFVAQLGGASPFRTAQFKAVRAKRLWWFTR*
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mRNA from alignment at Contig_58:115929..117369+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9365 ID=mRNA_9365|Name=jgi.p|Trimin1|168491|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1441bp|location=Sequence derived from alignment at Contig_58:115929..117369+ (Tribonema minus UTEX_B_3156 )
ATGGTGATAGTCTTGCTCGCAGCATATGCTATCGCGTCGCATCTACTGCG
GCTCGATTTCACGGAGCTGCCTGTGCGGGAAACCAGCTTCGTGCCCGGCG
ACGGAGGCGCTGTCAAGCAATTCTCCGTCCGCGTCAACACCTACAAGCGT
AATGAGAACCTGAAGCGGTCGGTCGAAGTGGTCGCCAAATGCCCCTCTGT
AGCTTCTTTAACGATTGTGTGGAGCGAGCAGGAGAATGACCCACCACCTC
TGGACTTCTTCGCCCCTCACGCCCGGCCCCTGATTAGCGTGGAGAAGCAT
ACTGTCAACAGCCTCAACAACCGGTTCCGGGCGCTCACTCAGCCCACCAC
TGAGGCCGTATTCTCTATGGATGACGATGTGCTGTTTCGATGCCAGGACT
TGGCTTTTGCGTTTGACACATGGAAGGCTGCCAAGGGCACCATGGTGGGG
TTTCACCCTCGGCTCGTCACGCTGGACCGTGCGACAGGGCAACACCGCTA
CCGCTCTTGGTGGTACGTGTGGCGCACGGGGGCGTACAACATGGTGCTCA
CAAAGGCGGCCTTCTTCCACAGAGAGTGAGTTCATTTGCAGCTGCAACTT
GTTCAGGCGCGTCGCGGCAGAACTAGGTGAACGGTTGGCGCACTGCATGC
TTTGCACAAGTCTTCACCGACCGCATACAGCAGGGTTTCACAGATTCGCA
TCAGTCAGGCATAAGAGTGATTGATGCTGGATGGCTATCTCAGCAGGGCA
GTTTACCAAACGCTTGGTTGATCAGTAAGCACGCGTACAGTGCTTCAGTC
AGTCCAGTGTATGAGTTCAAGTAGCGCATGTACCTTCCCGTTGTGGGTGT
CAGTGCATGTCAGCGCCCATGCCAGTCATTCTGAAGCGTGCCTTTGACCT
TATGCACCATCTCCCCCCCCCTCCCCCCCCCCCCCCAAGCTACCTCGAGA
CGTACTTCAGCGTGCTCTCCGACGAGGCGCGCGCGTACGTCGACGCAACG
CCAGCAGCGCATGTTACCTTCCCGTCAAGGGTGTCAGTTTGTATCAGTGC
ACACGCCTGTCATTCCGAAGCGTACGCGTCGTTGACCTCATGCTCCACCA
TCCCCCCCACCCCCCTTCCCCCACCCCCCCCAAGCTACCTGGAGACGTAC
TTCAGCGTCCTCTCCGACGAGGCGCGCGCGTATGTCGACGCGACGCGCAA
CTGTGACGACGTCGCCATGGCAGCGCTCATCGCGCACGTCTCCGGCGCGC
CCCCCATCTGGGTCGAGGCCGACACGTCCGATCTCGGCGTCACCAACGCC
ATCAGCGCGAGCCGCGACCACTTTGCGGAGCGCGGCCGCTGCCTCGACTT
CTTCGTCGCGCAGCTCGGCGGCGCGTCGCCGTTCCGGACCGCGCAGTTCA
AGGCCGTGCGCGCCAAGCGGCTGTGGTGGTTCACGCGGTGA
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Coding sequence (CDS) from alignment at Contig_58:115929..117369+

>mRNA_9365 ID=mRNA_9365|Name=jgi.p|Trimin1|168491|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_58:115929..117369+ (Tribonema minus UTEX_B_3156 )
ATGGTGATAGTCTTGCTCGCAGCATATGCTATCGCGTCGCATCTACTGCG
GCTCGATTTCACGGAGCTGCCTGTGCGGGAAACCAGCTTCGTGCCCGGCG
ACGGAGGCGCTGTCAAGCAATTCTCCGTCCGCGTCAACACCTACAAGCGT
AATGAGAACCTGAAGCGGTCGGTCGAAGTGGTCGCCAAATGCCCCTCTGT
AGCTTCTTTAACGATTGTGTGGAGCGAGCAGGAGAATGACCCACCACCTC
TGGACTTCTTCGCCCCTCACGCCCGGCCCCTGATTAGCGTGGAGAAGCAT
ACTGTCAACAGCCTCAACAACCGGTTCCGGGCGCTCACTCAGCCCACCAC
TGAGGCCGTATTCTCTATGGATGACGATGTGCTGTTTCGATGCCAGGACT
TGGCTTTTGCGTTTGACACATGGAAGGCTGCCAAGGGCACCATGGTGGGG
TTTCACCCTCGGCTCGTCACGCTGGACCGTGCGACAGGGCAACACCGCTA
CCGCTCTTGGTGGTACGTGTGGCGCACGGGGGCGTACAACATGGTGCTCA
CAAAGGCGGCCTTCTTCCACAGAGACTACCTGGAGACGTACTTCAGCGTC
CTCTCCGACGAGGCGCGCGCGTATGTCGACGCGACGCGCAACTGTGACGA
CGTCGCCATGGCAGCGCTCATCGCGCACGTCTCCGGCGCGCCCCCCATCT
GGGTCGAGGCCGACACGTCCGATCTCGGCGTCACCAACGCCATCAGCGCG
AGCCGCGACCACTTTGCGGAGCGCGGCCGCTGCCTCGACTTCTTCGTCGC
GCAGCTCGGCGGCGCGTCGCCGTTCCGGACCGCGCAGTTCAAGGCCGTGC
GCGCCAAGCGGCTGTGGTGGTTCACGCGGTGA
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