mRNA_9310 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165544
Unique NamemRNA_9310
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: A0A836CCS0_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.880e-53
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGANGGGCGSGSMHDAWANGRGVGVGTLPMARL 240
            IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGANGGGCGSGSMHDAWANGRGVGVGTLPMARL
Sbjct:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGANGGGCGSGSMHDAWANGRGVGVGTLPMARL 80
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: A0A835ZD03_9STRA (DnaJ subfamily B protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD03_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.560e-24
Identity = 51/72 (70.83%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGANGGGCGSGSMHDAWANGRGVGV 216
            +ALK HPDK G PHA EAFKAI HAFAVLSDP+KR AYD Y  +EPANG NGGG   G MH  WANGRG  V
Sbjct:  126 LALKFHPDKNGAPHAPEAFKAIGHAFAVLSDPDKRAAYDRYGDDEPANGLNGGG---GGMHGGWANGRGAEV 194
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: A0A6B2FXW7_MYXSQ (DnaJ homolog subfamily B member 14 (Trinotate prediction) (Fragment) n=1 Tax=Myxobolus squamalis TaxID=59785 RepID=A0A6B2FXW7_MYXSQ)

HSP 1 Score: 66.6 bits (161), Expect = 3.040e-11
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPAN 144
            +AL+ HPDK G P ASEAFKAISHA+ VL+DP KR  YDC   +E +N
Sbjct:  112 LALQFHPDKNGAPGASEAFKAISHAYTVLNDPEKRRVYDCGGMDENSN 159
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: A0A316UTF0_9BASI (DnaJ-domain-containing protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UTF0_9BASI)

HSP 1 Score: 65.9 bits (159), Expect = 9.640e-11
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGANGG 159
            +AL+ HPDK G P A EAFK +S AF VLSDP+KR  YD Y G+  + G  GG
Sbjct:  140 LALQLHPDKNGAPGADEAFKLVSKAFTVLSDPDKRAQYDRYGGDPDSRGGGGG 192
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: A0A443SE36_9ACAR (DnaJ subfamily B member 12-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SE36_9ACAR)

HSP 1 Score: 64.7 bits (156), Expect = 2.240e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEP 138
            +AL+ HPDK   P ASEAFKAI +AFAVLSDP KR  YD Y  +EP
Sbjct:  201 LALQFHPDKNKAPGASEAFKAIGNAFAVLSDPQKRKQYDLYGKDEP 246
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: D5G924_TUBMM (J domain-containing protein n=1 Tax=Tuber melanosporum (strain Mel28) TaxID=656061 RepID=D5G924_TUBMM)

HSP 1 Score: 63.9 bits (154), Expect = 4.270e-10
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGANGGG 162
            +AL  HPDK G P A EAFK +S AF VLSDP+KR  +D + G+  A G  GGG
Sbjct:   71 LALVMHPDKNGAPGADEAFKLVSRAFQVLSDPDKRALFDRHGGDPDARGGGGGG 124
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: F2QQU0_KOMPC (Type I HSP40 co-chaperone n=3 Tax=Komagataella TaxID=460517 RepID=F2QQU0_KOMPC)

HSP 1 Score: 63.5 bits (153), Expect = 6.190e-10
Identity = 35/59 (59.32%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    4 ALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGANGGGCGSGSM 180
            ALK HPDK   P A+E FK +SHA+ VLSDP KR  YD Y G E   G NGGG G G M
Sbjct:   30 ALKNHPDKNPSPEAAETFKGMSHAYEVLSDPQKREIYDQY-GEE---GLNGGGAGPGGM 84
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: I2G613_USTH4 (Related to HLJ1-Co-chaperone for Hsp40p n=2 Tax=Ustilago TaxID=5269 RepID=I2G613_USTH4)

HSP 1 Score: 63.5 bits (153), Expect = 6.270e-10
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGANGGGCGSGSMHDAWANGRGV 210
            +AL+ HPDK G P A EAFK++S AF++L+D +KR AYD Y G +P N  +  G  +   H+ +   RG 
Sbjct:  145 LALQLHPDKNGAPGADEAFKSVSKAFSILTDADKRAAYDRY-GGDPDNARSAAGAAAAGHHNPFGGMRGT 213
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: K7H2E5_CAEJA (J domain-containing protein n=2 Tax=Caenorhabditis japonica TaxID=281687 RepID=K7H2E5_CAEJA)

HSP 1 Score: 61.6 bits (148), Expect = 7.840e-10
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANG 147
            +ALK HPDK   PHA+EAFKA+ +A+AVLSD +KR  YD + G EP NG
Sbjct:  112 MALKLHPDKCRAPHATEAFKALGNAYAVLSDADKRRQYDQF-GAEPTNG 159
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BLAST of jgi.p|Trimin1|165544 vs. uniprot
Match: UPI0003FBA462 (molecular chaperone DnaJ n=1 Tax=Nocardioides insulae TaxID=394734 RepID=UPI0003FBA462)

HSP 1 Score: 63.2 bits (152), Expect = 8.390e-10
Identity = 41/87 (47.13%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:    1 IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGANGGGCGSG----SMHDAW----ANGRGVGVGTLPMAR 237
            +A + HPD   GP A E FK ISHA+ VLSDP KR AYD   G +P  GA G G G+G     + DA+    A G G G G  P  R
Sbjct:   25 LARQYHPDVNPGPEAEEKFKEISHAYEVLSDPQKRAAYD--RGGDPFGGAGGFGQGAGFSFTDIMDAFFGGAAGGTGAGRGPRPRVR 109
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165544 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCS0_9STRA1.880e-53100.00J domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A835ZD03_9STRA2.560e-2470.83DnaJ subfamily B protein n=1 Tax=Tribonema minus T... [more]
A0A6B2FXW7_MYXSQ3.040e-1162.50DnaJ homolog subfamily B member 14 (Trinotate pred... [more]
A0A316UTF0_9BASI9.640e-1156.60DnaJ-domain-containing protein n=1 Tax=Jaminaea ro... [more]
A0A443SE36_9ACAR2.240e-1065.22DnaJ subfamily B member 12-like protein n=1 Tax=Le... [more]
D5G924_TUBMM4.270e-1055.56J domain-containing protein n=1 Tax=Tuber melanosp... [more]
F2QQU0_KOMPC6.190e-1059.32Type I HSP40 co-chaperone n=3 Tax=Komagataella Tax... [more]
I2G613_USTH46.270e-1044.29Related to HLJ1-Co-chaperone for Hsp40p n=2 Tax=Us... [more]
K7H2E5_CAEJA7.840e-1061.22J domain-containing protein n=2 Tax=Caenorhabditis... [more]
UPI0003FBA4628.390e-1047.13molecular chaperone DnaJ n=1 Tax=Nocardioides insu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:488962..489204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165544|e_gw1.38.133.1
DescriptionDnaJ subfamily B protein. Source PGD
COG categoryO
Max annot lvl121069|Pythiales
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota,1MAWH@121069|Pythiales
Evalue6.51e-11
Seed ortholog115417.EPrPW00000026747
Hectar predicted targeting categoryother localisation
TranscriptId165866
TrackFilteredModels1
ProteinId165544
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165544gene_9310Tribonema minus UTEX_B_3156 geneContig_38 488962..489204 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9310_1exon_9310_1Tribonema minus UTEX_B_3156 exonContig_38 488962..489204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9310CDS_9310Tribonema minus UTEX_B_3156 CDSContig_38 488962..489204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165544Trimin1|165544|e_gw1.38.133.1Tribonema minus UTEX_B_3156 polypeptideContig_38 488962..489204 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9310 ID=mRNA_9310|Name=jgi.p|Trimin1|165544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=243bp|location=Sequence derived from alignment at Contig_38:488962..489204+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATTGCTCTCAAATGCCACCCGGACAAGCAAGGCGGTCCTCACGCGTCAGA
GGCATTTAAGGCGATCAGTCATGCGTTCGCAGTGCTCAGCGACCCCAACA
AGCGGGTGGCATACGACTGTTACAGCGGCAACGAGCCCGCCAACGGGGCG
AACGGCGGTGGCTGTGGCAGCGGCAGCATGCACGACGCATGGGCCAACGG
CCGTGGTGTGGGGGTAGGCACCCTGCCCATGGCTCGATTGTGA
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protein sequence of jgi.p|Trimin1|165544

>Trimin1|165544|e_gw1.38.133.1 ID=Trimin1|165544|e_gw1.38.133.1|Name=jgi.p|Trimin1|165544|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=81bp
IALKCHPDKQGGPHASEAFKAISHAFAVLSDPNKRVAYDCYSGNEPANGA
NGGGCGSGSMHDAWANGRGVGVGTLPMARL*
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mRNA from alignment at Contig_38:488962..489204+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9310 ID=mRNA_9310|Name=jgi.p|Trimin1|165544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=243bp|location=Sequence derived from alignment at Contig_38:488962..489204+ (Tribonema minus UTEX_B_3156 )
ATTGCTCTCAAATGCCACCCGGACAAGCAAGGCGGTCCTCACGCGTCAGA
GGCATTTAAGGCGATCAGTCATGCGTTCGCAGTGCTCAGCGACCCCAACA
AGCGGGTGGCATACGACTGTTACAGCGGCAACGAGCCCGCCAACGGGGCG
AACGGCGGTGGCTGTGGCAGCGGCAGCATGCACGACGCATGGGCCAACGG
CCGTGGTGTGGGGGTAGGCACCCTGCCCATGGCTCGATTGTGA
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Coding sequence (CDS) from alignment at Contig_38:488962..489204+

>mRNA_9310 ID=mRNA_9310|Name=jgi.p|Trimin1|165544|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=243bp|location=Sequence derived from alignment at Contig_38:488962..489204+ (Tribonema minus UTEX_B_3156 )
ATTGCTCTCAAATGCCACCCGGACAAGCAAGGCGGTCCTCACGCGTCAGA
GGCATTTAAGGCGATCAGTCATGCGTTCGCAGTGCTCAGCGACCCCAACA
AGCGGGTGGCATACGACTGTTACAGCGGCAACGAGCCCGCCAACGGGGCG
AACGGCGGTGGCTGTGGCAGCGGCAGCATGCACGACGCATGGGCCAACGG
CCGTGGTGTGGGGGTAGGCACCCTGCCCATGGCTCGATTGTGA
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