mRNA_9282 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165559
Unique NamemRNA_9282
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A835YVS6_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS6_9STRA)

HSP 1 Score: 293 bits (751), Expect = 1.110e-100
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
Query:    1 MSAASPAFRDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIPN 432
            MSAASPAFRDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIPN
Sbjct:    1 MSAASPAFRDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIPN 144          
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A835YYQ5_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ5_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.330e-59
Identity = 95/134 (70.90%), Postives = 109/134 (81.34%), Query Frame = 1
Query:   31 QYAEQPTATKVKTI-TGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIP 429
            Q  EQ    KVK I  G   FLEAMA+N D+PVV+KFYDTFCRACKA+APKFERMAQENPGV+FY+VEFR++KPLCKSLGITMLPTIQIY+G+AGK+A MPVGPKRFH+AE  LA VL Q  N    + +IHIP
Sbjct:   57 QRQEQSENRKVKLIENGTDGFLEAMASNADRPVVIKFYDTFCRACKAIAPKFERMAQENPGVSFYEVEFRENKPLCKSLGITMLPTIQIYRGAAGKVASMPVGPKRFHLAEEALASVLAQEGN----SAAIHIP 186          
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A6H5K275_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K275_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.140e-26
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   37 AEQPTATK-------VKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENP--GVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSN 396
            A +PTA +       V+ I     ++ AMA + DK VV+KFYD FCRAC  + P++E +++  P     F+ VEF   K LCK LGI  LPT+QIY G+ G++AD+P GP RF   E  +A V++   +
Sbjct:   64 AARPTAAQEPERRPNVQAIDSNDDYVSAMAQHEDKLVVIKFYDQFCRACDEIRPRYEDLSRSQPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKIAAVISSKKS 192          
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.400e-20
Identity = 51/129 (39.53%), Postives = 74/129 (57.36%), Query Frame = 1
Query:   10 ASPAFRDQYAEQPTATKVKTITGEMQFLEAMAAN-GDKPVVLKFYDTFCRACKAVAPKFERMAQE-NPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQN 390
            A P  R Q +  P       I  E  FL AM+ + GDK V +KFY  +CRACK +AP+FER+A+E     AFY++EF  +K LC+ L I  LP +Q ++G+ G +A +  GP +F      L ++L  +
Sbjct:  101 AKPLARKQSSHVPA------IVDEDTFLAAMSKSAGDKVVAIKFYAGWCRACKTIAPRFERLAKEFGEEAAFYEIEFSANKDLCRRLDIKKLPCVQFFRGAEGHVATVMCGPSKFPDVRLKLEDLLGHS 223          
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 6.410e-19
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  103 AANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIP 429
            A   ++ VV+KF+ ++CRACKA++PKF R+A + P V F+++ F  +K LCKSLGI +LP I+I  GS GK+     GP +     + L E L Q    HG   S  +P
Sbjct:   71 ATRENRVVVIKFFASWCRACKAMSPKFTRIADDWPDVEFHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGKVEGFTCGPSKI----SRLQEKLEQ----HGLPPSEELP 171          
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A7J9CGA3_GOSGO (Thioredoxin domain-containing protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A7J9CGA3_GOSGO)

HSP 1 Score: 85.1 bits (209), Expect = 2.540e-18
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   70 ITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRF 348
            I    +FL A++  GD+ V+++FY T+C +CKA+ PK  R AQENP + F +V F ++KP+CKSL + +LP    Y+G+ G++        +F
Sbjct:    4 IHSTQEFLSALSEAGDRLVIVEFYGTWCASCKALFPKLCRTAQENPEILFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKF 96          
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 4.280e-18
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1
Query:   61 VKTITGEMQFLEAMA-ANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPG--VAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKR 345
            V  I G+  FL AM     D+ V +KFY ++CRACK++AP+FER+A+E  G  V F+++EF  +K LC+ L I  LP +Q ++GS G +  +  GP +
Sbjct:    1 VVPIDGDEAFLAAMQYCTDDRLVAVKFYASWCRACKSIAPRFERLAKEFAGDEVQFFEIEFAANKELCRRLNIKKLPCVQYFRGSLGCVDTVMCGPSK 98          
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A7S0CN45_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CN45_MICPS)

HSP 1 Score: 86.3 bits (212), Expect = 9.960e-18
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1
Query:   25 RDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHG 405
            +D + E+     VK   G   FL  +   GD  VV+ FY  +C AC+A+ PK  ++A ENP   F +VEF  +K +C+S+G+ +LP   +Y+G  GK+A       + H     LAE       G G
Sbjct:  116 KDAWWEKEAPENVKDCDGMDAFLGELQRAGDALVVVDFYARWCGACRALYPKLCKLAAENPDAVFLKVEFDDNKDMCRSMGVKVLPFFHMYRGKDGKVASFSASVSKVHRLRDALAEHGGDAGRGAG 242          
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A067KPT7_JATCU (Thioredoxin domain-containing protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KPT7_JATCU)

HSP 1 Score: 85.5 bits (210), Expect = 1.340e-17
Identity = 36/101 (35.64%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   70 ITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLA 372
            I    +FL A++ +GD+ V+++FY T+C +C+A+ PK  R A+ENP + F +V F ++KP+CKSL + +LP    Y+G+ G++        +F   +  +A
Sbjct:   96 IHSTQEFLSALSQSGDRLVIVEFYGTWCASCRALFPKLCRTAEENPDILFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKDAIA 196          
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A2G5DWJ1_AQUCA (Thioredoxin domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5DWJ1_AQUCA)

HSP 1 Score: 85.1 bits (209), Expect = 1.810e-17
Identity = 37/102 (36.27%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   70 ITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAE 375
            I    +FL+A++  G+K V+++FY T+C +C+A+ PK  + AQENP + F +V F ++KP+CKSL + +LP    Y+GS G++        +F   +  +A+
Sbjct:   97 IHSTQEFLDALSQAGEKLVIVEFYGTWCGSCRALFPKLCKTAQENPDIIFLKVNFDENKPMCKSLNVKVLPYFHFYRGSDGQLESFSCSLAKFQKIKDGIAK 198          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVS6_9STRA1.110e-100100.00Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A835YYQ5_9STRA2.330e-5970.90Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A6H5K275_9PHAE1.140e-2641.86Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S4A7N2_9STRA1.400e-2039.53Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3ATR9_9EUKA6.410e-1942.20Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7J9CGA3_GOSGO2.540e-1839.78Thioredoxin domain-containing protein n=4 Tax=Goss... [more]
F0YB20_AURAN4.280e-1842.86Thioredoxin domain-containing protein (Fragment) n... [more]
A0A7S0CN45_MICPS9.960e-1834.65Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A067KPT7_JATCU1.340e-1735.64Thioredoxin domain-containing protein n=2 Tax=Jatr... [more]
A0A2G5DWJ1_AQUCA1.810e-1736.27Thioredoxin domain-containing protein n=2 Tax=Thal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:224430..225742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165559|e_gw1.38.56.1
BRITEko00000,ko00001,ko03110
KEGG Pathwayko04621,ko05418,map04621,map05418
KEGG koko:K03671
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009593,GO:0009941,GO:0010109,GO:0016020,GO:0016491,GO:0016667,GO:0016671,GO:0019222,GO:0031090,GO:0031323,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051775,GO:0051776,GO:0055114,GO:0065007
Descriptioncell redox homeostasis
COG categoryCO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota
Evalue3.52e-30
Seed ortholog2880.D8LIL6
Hectar predicted targeting categoryother localisation
TranscriptId165881
TrackFilteredModels1
ProteinId165559
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165559gene_9282Tribonema minus UTEX_B_3156 geneContig_38 224430..225742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165559Trimin1|165559|e_gw1.38.56.1Tribonema minus UTEX_B_3156 polypeptideContig_38 224430..225742 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9282_2exon_9282_2Tribonema minus UTEX_B_3156 exonContig_38 224430..224729 -
exon_9282_1exon_9282_1Tribonema minus UTEX_B_3156 exonContig_38 225608..225742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9282CDS_9282Tribonema minus UTEX_B_3156 CDSContig_38 225608..225742 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9282 ID=mRNA_9282|Name=jgi.p|Trimin1|165559|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_38:224430..225742- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGGCGTCGCCTGCTTTCCGCGACCAGTATGCGGAGCAACCGAC
GGCGACGAAGGTGAAGACTATCACGGGAGAGATGCAGTTTCTGGAGGCGA
TGGCAGCTAACGGCGACAAGCCGGTGGTGCTGAAGTTCTACGACACGTTC
TGCCGTGCCTGCAAGGCTGTCGCTCCCAAATTCGAGCGCATGGCACAGGA
GAACCCCGGTGTTGCCTTCTACCAGGTGGAGTTTCGCCAGGACAAGCCCC
TCTGCAAGTCTCTCGGCATCACCATGCTGCCTACCATTCAAATCTACCAG
GGCTCAGCAGGAAAGATTGCAGATATGCCTGTGGGCCCCAAGCGGTTTCA
CGTGGCGGAGGCAACGCTGGCGGAGGTTCTGAACCAGAACAGCAACGGGC
ACGGTGCCACTGGCTCCATCCACATTCCCAACTAA
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protein sequence of jgi.p|Trimin1|165559

>Trimin1|165559|e_gw1.38.56.1 ID=Trimin1|165559|e_gw1.38.56.1|Name=jgi.p|Trimin1|165559|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp
MSAASPAFRDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTF
CRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQ
GSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIPN*
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mRNA from alignment at Contig_38:224430..225742-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9282 ID=mRNA_9282|Name=jgi.p|Trimin1|165559|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1313bp|location=Sequence derived from alignment at Contig_38:224430..225742- (Tribonema minus UTEX_B_3156 )
ATGAGCGCGGCGTCGCCTGCTTTCCGCGACCAGTATGCGGAGCAACCGAC GGCGACGAAGGTGAAGACTATCACGGGAGAGATGCAGTTTCTGGAGGCGA TGGCAGCTAACGGCGACAAGCCGGTGGTGCTGAAGGTGCGTCCTGACGTC CAAGTACGCATGCGCGGTGAATGTGCTTAGATGCCATCACTCAACGGTGC CGCAGGCGGCACGATACTGAGTGCCAGCAGCCTGCAGTAAGCAATTCAAC GCTTTTGCTCCCGTGCATGCGCCCTCCCTGCTTCCGTCCTGGGTCTGCAT GCGCACACGTGTGCAAGACTAGATTCGTGCTGCTGCTGATTTTGTATGCC CTAGATTATTAGTTTATTCCTCTTCTTGCAACACGGACGACACGGCTGTA GGCATTGCAGCATGCTGTTGGTGCAGGGCATGACCACGACAGAGCATATG TATTGTAGGAGGAGCTTACGCTATGCTCGCGTATGCTACTCTGCCGGTGA TCGGTTTGTATCCTCATGGCTAGCCTGCAACAGCGTATGCTTTGCTTGCG GATCAAGCCGTTGTTGACAGGCATTTCTTCGGTGTTAAAACGTCCCTATG TCAGACACATGTTTACCTAGGCTGTTGTGGGATCTTTGTATGCAGGCATA AACAGTTCAGCTGCTATAATGATAGGACCGGGTACCTTGTAAGTTCAGGT CAGCATAAACTTTTAACTGGTATGTACAAGAGGTCGGTTCAGATTGCCAC AACTTTTCGGATGGCCATTGCTGCGGTCACGGCCTTGAGGCGGCACTCAG CGCTGCAACCCAGCACATTTACATCTCGCGAATAACGCAAGGAAGAATGC TCTGGGTGTTCTGGGTTGTGGATATGGCACTTGTTGAGATTCTTGAAGTA GTATGTGCTAATTCTGTTTACGTTCTTCAGCAGTATGAGTTACATTGTTA TGAAGGCAGCAGCGCTCACGTCACTGCTTGCCTCTTGCCTTCTTTTCTGT ACTTCGTTTGCAGTTCTACGACACGTTCTGCCGTGCCTGCAAGGCTGTCG CTCCCAAATTCGAGCGCATGGCACAGGAGAACCCCGGTGTTGCCTTCTAC CAGGTGGAGTTTCGCCAGGACAAGCCCCTCTGCAAGTCTCTCGGCATCAC CATGCTGCCTACCATTCAAATCTACCAGGGCTCAGCAGGAAAGATTGCAG ATATGCCTGTGGGCCCCAAGCGGTTTCACGTGGCGGAGGCAACGCTGGCG GAGGTTCTGAACCAGAACAGCAACGGGCACGGTGCCACTGGCTCCATCCA CATTCCCAACTAA
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Coding sequence (CDS) from alignment at Contig_38:224430..225742-

>mRNA_9282 ID=mRNA_9282|Name=jgi.p|Trimin1|165559|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=435bp|location=Sequence derived from alignment at Contig_38:224430..225742- (Tribonema minus UTEX_B_3156 )
ATGAGCGCGGCGTCGCCTGCTTTCCGCGACCAGTATGCGGAGCAACCGAC
GGCGACGAAGGTGAAGACTATCACGGGAGAGATGCAGTTTCTGGAGGCGA
TGGCAGCTAACGGCGACAAGCCGGTGGTGCTGAAGTTCTACGACACGTTC
TGCCGTGCCTGCAAGGCTGTCGCTCCCAAATTCGAGCGCATGGCACAGGA
GAACCCCGGTGTTGCCTTCTACCAGGTGGAGTTTCGCCAGGACAAGCCCC
TCTGCAAGTCTCTCGGCATCACCATGCTGCCTACCATTCAAATCTACCAG
GGCTCAGCAGGAAAGATTGCAGATATGCCTGTGGGCCCCAAGCGGTTTCA
CGTGGCGGAGGCAACGCTGGCGGAGGTTCTGAACCAGAACAGCAACGGGC
ACGGTGCCACTGGCTCCATCCACATTCCCAACTAA
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