mRNA_9270 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131019
Unique NamemRNA_9270
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|131019 vs. uniprot
Match: A0A835YU19_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU19_9STRA)

HSP 1 Score: 250 bits (638), Expect = 3.270e-84
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:    1 DLLQQYKRLERDASGTRHIKYKFGACTKDGRLYAQGPSLQNFPGGVRDFIAAGVLCDMDGENMHPRIILALCELHGIDAPYLREYVEHRERVLSEIAAADNCGRGGAKDAVLIASYGGDVR 363
            DLLQQYKRLERDASGTRHIKYKFGACTKDGRLYAQGPSLQNFPGGVRDFIAAGVLCDMDGENMHPRIILALCELHGIDAPYLREYVEHRERVLSEIAAADNCGRGGAKDAVLIASYGGDVR
Sbjct:    1 DLLQQYKRLERDASGTRHIKYKFGACTKDGRLYAQGPSLQNFPGGVRDFIAAGVLCDMDGENMHPRIILALCELHGIDAPYLREYVEHRERVLSEIAAADNCGRGGAKDAVLIASYGGDVR 121
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BLAST of jgi.p|Trimin1|131019 vs. uniprot
Match: A0A836CMP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.630e-31
Identity = 73/123 (59.35%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:    1 DLLQQYKRLERDASGTRHIKYKFGACTKDGRLYAQGPSLQNFPGGVRDFIAAGVLCDMDGENMHPRIILALCELHGIDAPYLREYVEHRERVLSEIA--AADNCGRGGAKDAVLIASYGGDVR 363
            D LQQYKRL RD SG RH+                         GV +FI AGVL D+DGENMHPRI LALCEL GIDAPYLREY+E  ERVLSEIA  AAD C R GAK+AVL+ S GG VR
Sbjct:   50 DSLQQYKRLRRDNSGARHLS------------------------GVHNFIMAGVLRDLDGENMHPRIFLALCELQGIDAPYLREYLELHERVLSEIAPAAADGCDRDGAKEAVLVTSCGGIVR 148
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131019 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YU19_9STRA3.270e-84100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CMP9_9STRA1.630e-3159.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:129877..130239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131019|gw1.38.16.1
DescriptionVirulence-associated protein E
COG categoryS
Max annot lvl10239|Viruses
EggNOG OGs4QCHV@10239|Viruses
Evalue5.7e-14
Seed ortholog1411887.V6BPG7_9VIRU
Hectar predicted targeting categoryother localisation
TranscriptId131341
TrackFilteredModels1
ProteinId131019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131019gene_9270Tribonema minus UTEX_B_3156 geneContig_38 129877..130239 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9270_1exon_9270_1Tribonema minus UTEX_B_3156 exonContig_38 129877..130239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9270CDS_9270Tribonema minus UTEX_B_3156 CDSContig_38 129877..130239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131019Trimin1|131019|gw1.38.16.1Tribonema minus UTEX_B_3156 polypeptideContig_38 129877..130239 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9270 ID=mRNA_9270|Name=jgi.p|Trimin1|131019|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_38:129877..130239+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACTTGCTGCAGCAGTACAAGCGGCTGGAACGCGATGCCAGCGGCACGCG
GCACATCAAGTACAAGTTCGGGGCCTGCACCAAGGACGGCCGTCTCTACG
CGCAGGGCCCATCGCTGCAGAACTTCCCTGGCGGCGTGCGCGACTTCATC
GCGGCCGGCGTGTTGTGCGACATGGATGGTGAGAATATGCACCCGCGCAT
CATCCTAGCGCTCTGTGAGCTCCATGGCATCGACGCGCCGTACCTGCGGG
AGTACGTCGAACACCGCGAGCGCGTGCTGTCAGAGATCGCGGCGGCGGAC
AACTGCGGCCGCGGCGGCGCGAAGGATGCAGTGCTCATCGCGTCTTACGG
TGGCGATGTGCGC
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protein sequence of jgi.p|Trimin1|131019

>Trimin1|131019|gw1.38.16.1 ID=Trimin1|131019|gw1.38.16.1|Name=jgi.p|Trimin1|131019|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
DLLQQYKRLERDASGTRHIKYKFGACTKDGRLYAQGPSLQNFPGGVRDFI
AAGVLCDMDGENMHPRIILALCELHGIDAPYLREYVEHRERVLSEIAAAD
NCGRGGAKDAVLIASYGGDVR
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mRNA from alignment at Contig_38:129877..130239+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9270 ID=mRNA_9270|Name=jgi.p|Trimin1|131019|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_38:129877..130239+ (Tribonema minus UTEX_B_3156 )
GACTTGCTGCAGCAGTACAAGCGGCTGGAACGCGATGCCAGCGGCACGCG
GCACATCAAGTACAAGTTCGGGGCCTGCACCAAGGACGGCCGTCTCTACG
CGCAGGGCCCATCGCTGCAGAACTTCCCTGGCGGCGTGCGCGACTTCATC
GCGGCCGGCGTGTTGTGCGACATGGATGGTGAGAATATGCACCCGCGCAT
CATCCTAGCGCTCTGTGAGCTCCATGGCATCGACGCGCCGTACCTGCGGG
AGTACGTCGAACACCGCGAGCGCGTGCTGTCAGAGATCGCGGCGGCGGAC
AACTGCGGCCGCGGCGGCGCGAAGGATGCAGTGCTCATCGCGTCTTACGG
TGGCGATGTGCGC
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Coding sequence (CDS) from alignment at Contig_38:129877..130239+

>mRNA_9270 ID=mRNA_9270|Name=jgi.p|Trimin1|131019|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_38:129877..130239+ (Tribonema minus UTEX_B_3156 )
GACTTGCTGCAGCAGTACAAGCGGCTGGAACGCGATGCCAGCGGCACGCG
GCACATCAAGTACAAGTTCGGGGCCTGCACCAAGGACGGCCGTCTCTACG
CGCAGGGCCCATCGCTGCAGAACTTCCCTGGCGGCGTGCGCGACTTCATC
GCGGCCGGCGTGTTGTGCGACATGGATGGTGAGAATATGCACCCGCGCAT
CATCCTAGCGCTCTGTGAGCTCCATGGCATCGACGCGCCGTACCTGCGGG
AGTACGTCGAACACCGCGAGCGCGTGCTGTCAGAGATCGCGGCGGCGGAC
AACTGCGGCCGCGGCGGCGCGAAGGATGCAGTGCTCATCGCGTCTTACGG
TGGCGATGTGCGC
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