mRNA_9251 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|139065
Unique NamemRNA_9251
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|139065 vs. uniprot
Match: A0A836CDC8_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDC8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.340e-32
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:    1 IHCAAAAGNLEAVDRLLRLGGADVNASTSQGDQFNEVTPFMXXXXXXXXXXXXXXXAAGAVVNSYDVLXXXXXXXXXXXXXXXXXXXXXXXXXXLLGGDTPLXXXXXXXXXXXXXXXXXXXXXXAVYDTVGRSALIL 411
            IHCAAAAGNLEAVDRLLRLGGADVNASTSQGDQFNEVTPFMXXXXXXXXXXXXXXXAAGAVVNSYDVLXXXXXXXXXXXXXXXXXXXXXXXXXXLLGGDTPLXXXXXXXXXXXXXXXXXXXXXXAVYDTVGRSALIL
Sbjct:    1 IHCAAAAGNLEAVDRLLRLGGADVNASTSQGDQFNEVTPFMXXXXXXXXXXXXXXXAAGAVVNSYDVLXXXXXXXXXXXXXXXXXXXXXXXXXXLLGGDTPLXXXXXXXXXXXXXXXXXXXXXXAVYDTVGRSALIL 137
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139065 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CDC8_9STRA4.340e-32100.00Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_39contigContig_39:976160..976636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|139065|gw1.39.76.1
Hectar predicted targeting categoryother localisation
TranscriptId139387
TrackFilteredModels1
ProteinId139065
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139065gene_9251Tribonema minus UTEX_B_3156 geneContig_39 976160..976636 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9251_1exon_9251_1Tribonema minus UTEX_B_3156 exonContig_39 976160..976636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9251CDS_9251Tribonema minus UTEX_B_3156 CDSContig_39 976160..976636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139065Trimin1|139065|gw1.39.76.1Tribonema minus UTEX_B_3156 polypeptideContig_39 976160..976636 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9251 ID=mRNA_9251|Name=jgi.p|Trimin1|139065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=477bp|location=Sequence derived from alignment at Contig_39:976160..976636- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCCACTGCGCCGCTGCAGCCGGAAACCTGGAGGCCGTCGATCGGCTGCT
CAGGTTAGGCGGCGCAGACGTGAATGCCAGTACCTCTCAAGGGGACCAGT
TCAACGAAGTCACACCGTTCATGTGCGCGGCGCAGGCCGGGACCCCGGAG
TGCATCGACCGGCTGCTCGCGGCCGGCGCGGTCGTGAACAGCTACGACGT
GCTCATGTGCGCGGCACGGGCCGGGAACCCGGAGTGCATCGACCGGCTGC
TCGCGGCCCGCGCGGACGTGAACAGCTGTGACCTTCTTGGAGGTGACACG
CCGCTCATGGCCGCGGCACAAGCCGGGAACGCGAAGTGCGTCGACCGGCT
GCTCGCGGCCGGTGCGGACGTTGCCGTGTACGACACTGTTGGGAGGTCGG
CGTTGATCTTGGCCGCGGGCGCCGGGCACTTGGACTGCGTCAACCGATTG
CTAGCGCGTGGCGCGGACGTAAATGCC
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protein sequence of jgi.p|Trimin1|139065

>Trimin1|139065|gw1.39.76.1 ID=Trimin1|139065|gw1.39.76.1|Name=jgi.p|Trimin1|139065|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=159bp
IHCAAAAGNLEAVDRLLRLGGADVNASTSQGDQFNEVTPFMCAAQAGTPE
CIDRLLAAGAVVNSYDVLMCAARAGNPECIDRLLAARADVNSCDLLGGDT
PLMAAAQAGNAKCVDRLLAAGADVAVYDTVGRSALILAAGAGHLDCVNRL
LARGADVNA
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mRNA from alignment at Contig_39:976160..976636-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9251 ID=mRNA_9251|Name=jgi.p|Trimin1|139065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=477bp|location=Sequence derived from alignment at Contig_39:976160..976636- (Tribonema minus UTEX_B_3156 )
ATCCACTGCGCCGCTGCAGCCGGAAACCTGGAGGCCGTCGATCGGCTGCT
CAGGTTAGGCGGCGCAGACGTGAATGCCAGTACCTCTCAAGGGGACCAGT
TCAACGAAGTCACACCGTTCATGTGCGCGGCGCAGGCCGGGACCCCGGAG
TGCATCGACCGGCTGCTCGCGGCCGGCGCGGTCGTGAACAGCTACGACGT
GCTCATGTGCGCGGCACGGGCCGGGAACCCGGAGTGCATCGACCGGCTGC
TCGCGGCCCGCGCGGACGTGAACAGCTGTGACCTTCTTGGAGGTGACACG
CCGCTCATGGCCGCGGCACAAGCCGGGAACGCGAAGTGCGTCGACCGGCT
GCTCGCGGCCGGTGCGGACGTTGCCGTGTACGACACTGTTGGGAGGTCGG
CGTTGATCTTGGCCGCGGGCGCCGGGCACTTGGACTGCGTCAACCGATTG
CTAGCGCGTGGCGCGGACGTAAATGCC
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Coding sequence (CDS) from alignment at Contig_39:976160..976636-

>mRNA_9251 ID=mRNA_9251|Name=jgi.p|Trimin1|139065|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=477bp|location=Sequence derived from alignment at Contig_39:976160..976636- (Tribonema minus UTEX_B_3156 )
ATCCACTGCGCCGCTGCAGCCGGAAACCTGGAGGCCGTCGATCGGCTGCT
CAGGTTAGGCGGCGCAGACGTGAATGCCAGTACCTCTCAAGGGGACCAGT
TCAACGAAGTCACACCGTTCATGTGCGCGGCGCAGGCCGGGACCCCGGAG
TGCATCGACCGGCTGCTCGCGGCCGGCGCGGTCGTGAACAGCTACGACGT
GCTCATGTGCGCGGCACGGGCCGGGAACCCGGAGTGCATCGACCGGCTGC
TCGCGGCCCGCGCGGACGTGAACAGCTGTGACCTTCTTGGAGGTGACACG
CCGCTCATGGCCGCGGCACAAGCCGGGAACGCGAAGTGCGTCGACCGGCT
GCTCGCGGCCGGTGCGGACGTTGCCGTGTACGACACTGTTGGGAGGTCGG
CGTTGATCTTGGCCGCGGGCGCCGGGCACTTGGACTGCGTCAACCGATTG
CTAGCGCGTGGCGCGGACGTAAATGCC
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