mRNA_9244 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|146878
Unique Name	mRNA_9244
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|146878 vs. uniprot
Match: A0A835YY16_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY16_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.030e-13
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:    1 GTTALMLAAINGHVDCVNALRQHDTAVLLHARDSNGGI 114
            GTTALMLAAINGHVDCVNALRQHDTAVLLHARDSNGGI
Sbjct:    1 GTTALMLAAINGHVDCVNALRQHDTAVLLHARDSNGGI 38

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|146878 vs. uniprot

BLAST of jgi.p|Trimin1|146878 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YY16_9STRA	2.030e-13	100.00	Ankyrin repeat-containing domain protein (Fragment...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_39	contig	Contig_39:899746..900705 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|146878\|gw1.39.110.1
Hectar predicted targeting category	other localisation
TranscriptId	147200
Track	FilteredModels1
ProteinId	146878

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|146878	gene_9244	Tribonema minus UTEX_B_3156	gene	Contig_39 899746..900705 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9244_1	exon_9244_1	Tribonema minus UTEX_B_3156	exon	Contig_39 899746..900705 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9244	CDS_9244	Tribonema minus UTEX_B_3156	CDS	Contig_39 899746..900705 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|146878	Trimin1\|146878\|gw1.39.110.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_39 899746..900705 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_39:899746..900705+
coding sequence from alignment at Contig_39:899746..900705+

spliced messenger RNA

>mRNA_9244 ID=mRNA_9244|Name=jgi.p|Trimin1|146878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_39:899746..900705+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCACCACTGCGCTCATGCTGGCCGCCATAAACGGCCACGTCGACTGCGT
CAACGCTCTACGGCAGCACGACACCGCCGTCCTTCTGCATGCACGTGACA
GCAATGGCGGCATAGCGCTAATGTACGCTGCTGCCAAAGGCCACGTCCGC
TGCGTGGCTGCGCTGCTTCAGCATGACGTGTCCGTCCAGCTGAACGCCCG
CAACAGCGCAGGCTGCACAGCGCTGATGCACGCTGCACACCACGGTCGTG
TGGCCTGCGTCCATGCCCTGCTTCAGCATGACGTGGCCTTCCAGCTGAAC
GCCCGTGACAACGACGGCGGCACAGCGCTGATGCATGCTGCACGCAAAGA
CCATGTGGACTGCGTCAATGCCCTGCTTCGACATGACGCGTCCGCCCAGC
TCAACGCCCGTGATAGCGCAGGCGGCACAGCGCTGATGCTTGCTGCTGCC
GGTGGCCATGCCGACTGCATCAATACCCTGCTCCAGCAAGATGCGTCCGC
CCAGCTCAACGCTCGTGATAGCGCGGGCGTCACAGCGCTGATGGTCGCTG
CACTCTACGGAATTGCCGACTGCATCGAGGGGCTCCTTCAGCGAGATGCG
TCCATCCAGCTCGCAGCAGTTCCCTCCCACGGCTTCACAGCGCTGATGGT
CGCCACAATCAACAGTCATGTCGACTGCATCAGGGCGCTGCTGCGCCGAG
ACGTCCCCGTGCAGCTGAAAGCCCACGACGGCACTGGCTGCACGCCGCTA
ATGTTTGCTGCTCTCTACGGCAAGGTTGACTGCATCAGAGCGCTGCTTCG
GCGAGACGCGTCCGACCAGCTGAACGCCCGGGATGGCAAAGGCTGCACAG
CGATGATGTACGCCGCGATCGGTGGCGATGCTGGCAGCATCGAGGCGCTA
CTTCAGCAAGACGCCTCCATACAGCTGGCGGCCTCAAGTCAAAACGGACT
AACGCCTCTT

protein sequence of jgi.p|Trimin1|146878

>Trimin1|146878|gw1.39.110.1 ID=Trimin1|146878|gw1.39.110.1|Name=jgi.p|Trimin1|146878|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=320bp
GTTALMLAAINGHVDCVNALRQHDTAVLLHARDSNGGIALMYAAAKGHVR
CVAALLQHDVSVQLNARNSAGCTALMHAAHHGRVACVHALLQHDVAFQLN
ARDNDGGTALMHAARKDHVDCVNALLRHDASAQLNARDSAGGTALMLAAA
GGHADCINTLLQQDASAQLNARDSAGVTALMVAALYGIADCIEGLLQRDA
SIQLAAVPSHGFTALMVATINSHVDCIRALLRRDVPVQLKAHDGTGCTPL
MFAALYGKVDCIRALLRRDASDQLNARDGKGCTAMMYAAIGGDAGSIEAL
LQQDASIQLAASSQNGLTPL

mRNA from alignment at Contig_39:899746..900705+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9244 ID=mRNA_9244|Name=jgi.p|Trimin1|146878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_39:899746..900705+ (Tribonema minus UTEX_B_3156 )
GGCACCACTGCGCTCATGCTGGCCGCCATAAACGGCCACGTCGACTGCGT
CAACGCTCTACGGCAGCACGACACCGCCGTCCTTCTGCATGCACGTGACA
GCAATGGCGGCATAGCGCTAATGTACGCTGCTGCCAAAGGCCACGTCCGC
TGCGTGGCTGCGCTGCTTCAGCATGACGTGTCCGTCCAGCTGAACGCCCG
CAACAGCGCAGGCTGCACAGCGCTGATGCACGCTGCACACCACGGTCGTG
TGGCCTGCGTCCATGCCCTGCTTCAGCATGACGTGGCCTTCCAGCTGAAC
GCCCGTGACAACGACGGCGGCACAGCGCTGATGCATGCTGCACGCAAAGA
CCATGTGGACTGCGTCAATGCCCTGCTTCGACATGACGCGTCCGCCCAGC
TCAACGCCCGTGATAGCGCAGGCGGCACAGCGCTGATGCTTGCTGCTGCC
GGTGGCCATGCCGACTGCATCAATACCCTGCTCCAGCAAGATGCGTCCGC
CCAGCTCAACGCTCGTGATAGCGCGGGCGTCACAGCGCTGATGGTCGCTG
CACTCTACGGAATTGCCGACTGCATCGAGGGGCTCCTTCAGCGAGATGCG
TCCATCCAGCTCGCAGCAGTTCCCTCCCACGGCTTCACAGCGCTGATGGT
CGCCACAATCAACAGTCATGTCGACTGCATCAGGGCGCTGCTGCGCCGAG
ACGTCCCCGTGCAGCTGAAAGCCCACGACGGCACTGGCTGCACGCCGCTA
ATGTTTGCTGCTCTCTACGGCAAGGTTGACTGCATCAGAGCGCTGCTTCG
GCGAGACGCGTCCGACCAGCTGAACGCCCGGGATGGCAAAGGCTGCACAG
CGATGATGTACGCCGCGATCGGTGGCGATGCTGGCAGCATCGAGGCGCTA
CTTCAGCAAGACGCCTCCATACAGCTGGCGGCCTCAAGTCAAAACGGACT
AACGCCTCTT

Coding sequence (CDS) from alignment at Contig_39:899746..900705+

>mRNA_9244 ID=mRNA_9244|Name=jgi.p|Trimin1|146878|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=960bp|location=Sequence derived from alignment at Contig_39:899746..900705+ (Tribonema minus UTEX_B_3156 )
GGCACCACTGCGCTCATGCTGGCCGCCATAAACGGCCACGTCGACTGCGT
CAACGCTCTACGGCAGCACGACACCGCCGTCCTTCTGCATGCACGTGACA
GCAATGGCGGCATAGCGCTAATGTACGCTGCTGCCAAAGGCCACGTCCGC
TGCGTGGCTGCGCTGCTTCAGCATGACGTGTCCGTCCAGCTGAACGCCCG
CAACAGCGCAGGCTGCACAGCGCTGATGCACGCTGCACACCACGGTCGTG
TGGCCTGCGTCCATGCCCTGCTTCAGCATGACGTGGCCTTCCAGCTGAAC
GCCCGTGACAACGACGGCGGCACAGCGCTGATGCATGCTGCACGCAAAGA
CCATGTGGACTGCGTCAATGCCCTGCTTCGACATGACGCGTCCGCCCAGC
TCAACGCCCGTGATAGCGCAGGCGGCACAGCGCTGATGCTTGCTGCTGCC
GGTGGCCATGCCGACTGCATCAATACCCTGCTCCAGCAAGATGCGTCCGC
CCAGCTCAACGCTCGTGATAGCGCGGGCGTCACAGCGCTGATGGTCGCTG
CACTCTACGGAATTGCCGACTGCATCGAGGGGCTCCTTCAGCGAGATGCG
TCCATCCAGCTCGCAGCAGTTCCCTCCCACGGCTTCACAGCGCTGATGGT
CGCCACAATCAACAGTCATGTCGACTGCATCAGGGCGCTGCTGCGCCGAG
ACGTCCCCGTGCAGCTGAAAGCCCACGACGGCACTGGCTGCACGCCGCTA
ATGTTTGCTGCTCTCTACGGCAAGGTTGACTGCATCAGAGCGCTGCTTCG
GCGAGACGCGTCCGACCAGCTGAACGCCCGGGATGGCAAAGGCTGCACAG
CGATGATGTACGCCGCGATCGGTGGCGATGCTGGCAGCATCGAGGCGCTA
CTTCAGCAAGACGCCTCCATACAGCTGGCGGCCTCAAGTCAAAACGGACT
AACGCCTCTT