mRNA_9210 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A835Z1Y4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y4_9STRA) HSP 1 Score: 399 bits (1026), Expect = 1.400e-139 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 2 Query: 95 MGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELLPWRQSRMAPAKGESPVTANTEQLTQPAAATREARTSRGRKGTRRRRVTLVTVRSRASVRAAARGATVAAQSR 736 MGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELLPWRQSRMAPAKGESPVTANTEQLTQPAAATREARTSRGRKGTRRRRVTLVTVRSRASVRAAARGATVAAQSR Sbjct: 1 MGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELLPWRQSRMAPAKGESPVTANTEQLTQPAAATREARTSRGRKGTRRRRVTLVTVRSRASVRAAARGATVAAQSR 214
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: D7G8A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A3_ECTSI) HSP 1 Score: 120 bits (301), Expect = 8.550e-30 Identity = 55/131 (41.98%), Postives = 89/131 (67.94%), Query Frame = 2 Query: 122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIME 514 L ++ FED+G+T ++ P +HE L+VAFLA TWA+CYQ QP+Q + AP+ + I+ S N +++ R+ F +++ +E +++ L+ +G D+ R+ +LAEST+FRK KP+TIPGKLW T K+ + Sbjct: 2 LARIKEYFEDRGVTASNLPKVIVVHECLSVAFLALTWAVCYQIQPTQGPVLAPINKTIQNSNNAFIVRSRQSFEALISKSEKRLS-QDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKLSQ 131
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A7S0WNF0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WNF0_9CHLO) HSP 1 Score: 87.4 bits (215), Expect = 1.020e-17 Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = 2 Query: 122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSEN-RWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKI 508 + ++ F +QG+T AD P A +HE++++ F A+TW + YQTQP ++ LA A+ + ++++ + G K + R+S D RLT + AES FR IKP+T+PGKLWA WK+ Sbjct: 1 MGKIKDYFVEQGLTVADIPKAIVLHEVVSIGFAAATWMVAYQTQPGKT-----LAMAVPADKRPKFLVNGYKAAMGAAKKQVEKTSFLKRIS----DPERLTVSCAESICFRGIIKPVTVPGKLWAAWKL 121
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A7S0IM15_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IM15_MICPS) HSP 1 Score: 78.6 bits (192), Expect = 2.550e-14 Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSS----QGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIME 514 + ++ F +QG+ P D P AF HE+++VAF ASTW CY QPS + + PLA+ ++ F +A ++AK+ L + RLT +LAES +FR +IKPIT GKL+ ++K ++ Sbjct: 1 MGRIKDYFVEQGLGPKDIPVAFVFHEVISVAFAASTWVACYGIQPSAT-ICRPLAKLPIAAK------AAGAFEKALAFSDAKVGKMTWLKKVPIVKNAAPRRLTVSLAESLMFRGAIKPITFGGKLYLSYKFVQ 128
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A7S3XSQ9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSQ9_HETAK) HSP 1 Score: 79.3 bits (194), Expect = 1.470e-13 Identity = 46/165 (27.88%), Postives = 81/165 (49.09%), Query Frame = 2 Query: 122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEA-----------------------------------KIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIM 511 ++ ++ F ++G ++ P A A++E+L ++FL STW+ICYQ QP QSA+ + ++++E + G+ V SA++ KI S + +T +L + +S++FRK+ KP+TIP K+W TWKI+ Sbjct: 27 INDIKKYFGEKGFEASEIPKAIAVYEILGLSFLVSTWSICYQLQPHQSAVLKSCRQFLQSNEQALPKFLSTGYQNAVHSADSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIPGKI--SEIIGGGFLNTEKLVASYIQSSVFRKACKPVTIPAKIWLTWKIL 189
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A4S087_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S087_OSTLU) HSP 1 Score: 75.1 bits (183), Expect = 3.990e-13 Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 2 Query: 122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIM 511 + R F D+G+TP D AF HE+++VAF ASTW Y +PS++ L PLA+ + +E + R+ A P L + + RLT +LAES FR IKPIT GKLW +++ + Sbjct: 1 MGRAREYFVDKGLTPTDVVPAFVFHEVISVAFAASTWIAAYAIEPSRTVL-KPLAKT-KVAEKAAPL-FRKTLAAAAKQTAKATTRVPAL--RAANAERLTLSLAESLFFRGCIKPITFGGKLWLSYQFI 125
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A7S0GV26_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GV26_MICPS) HSP 1 Score: 75.5 bits (184), Expect = 5.290e-13 Identity = 54/153 (35.29%), Postives = 77/153 (50.33%), Query Frame = 2 Query: 92 AMGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIA-------------ASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIM 511 A GG G + ++ F DQG+T AD P A HE+++V F A TW+ CY QPS + + P+A S+ V F +A ++ K+A A+PR RLT +LAES +FR SIKPIT KL+ ++K + Sbjct: 30 AKSEGGIKGSVSRVKEYFTDQGLTAADLPAALIFHEVISVGFAAFTWSACYGIQPSVT-IARPMAGLPGASK------VAGAFDRALAFSDKKVANMKWLKKVPVVKHAAPR---------RLTVSLAESLVFRGSIKPITFGAKLYLSYKFV 166
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: C1DY48_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DY48_MICCC) HSP 1 Score: 78.6 bits (192), Expect = 6.640e-13 Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSS----QGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIME 514 + ++ F +QG+ P D P AF HE+++VAF ASTW CY QPS + + PLA+ ++ F +A ++AK+ L + RLT +LAES +FR +IKPIT GKL+ ++K ++ Sbjct: 1 MGRIKDYFVEQGLGPKDIPVAFVFHEVISVAFAASTWVACYGIQPSAT-ICRPLAKLPIAAK------AAGAFEKALAFSDAKVGKMTWLKKVPIVKNAAPRRLTVSLAESLMFRGAIKPITFGGKLYLSYKFVQ 128
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A090M7Q6_OSTTA (Unnamed product n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M7Q6_OSTTA) HSP 1 Score: 73.9 bits (180), Expect = 1.390e-12 Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 2 Query: 122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVAS-----AEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELL 520 + ++ F D+G+ P D AF HE +++AF ASTW Y +P+++ L R +R ++ M G A +A+ A +I A R S++ RLT +LAES +FR SIKPIT GKLW +++ ++ L Sbjct: 1 MGRVKRYFIDRGLGPEDLIPAFVFHETISIAFAASTWIAAYAIEPTRTVL-----RPLRGTKAAKAMAKPFGAALELATKQTAKAVTRIPALKRASAE-----RLTVSLAESLMFRGSIKPITFGGKLWLSYEFVKWL 128
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A4Q6D0M9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6D0M9_9PROT) HSP 1 Score: 68.6 bits (166), Expect = 9.490e-11 Identity = 44/129 (34.11%), Postives = 69/129 (53.49%), Query Frame = 2 Query: 137 GVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFA-PLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELL 520 G +D+G P+D P A IHELL + LA TW++CY SQS +F PLA V S++ A + L + + ++ + + ES+ RK I+P+T+PGK++ T+K++ELL Sbjct: 14 GKLKDKGFGPSDIPKAIFIHELLGMFMLALTWSLCYFYPLSQSPMFVKPLA---------------------VISSKMPAALAKSLEANKFLSSPIGVSYVESSCLRKLIRPLTLPGKVFLTFKLVELL 121
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A836CG08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG08_9STRA) HSP 1 Score: 998 bits (2580), Expect = 0.000e+0 Identity = 550/550 (100.00%), Postives = 550/550 (100.00%), Query Frame = 1 Query: 1 MLLLCSRCVLLLLITCLLAYLPADEAKGRDSKSKKGREDVSAGSSKRPSIEALGKALRVVLGPELGILEGEWNKTRTDLQQGLDGVEAGVRGELERAKRQAEQQTRLWKQSADAQVQQLLNQWLSDDGLKTTFSAYNYWRGVAEGARLKRLCKDLGLSDAIAARAAAALNAKIPPKALTAMAVATNVTAEIVADTVEAPRNAGASAAEVMAELIEWAEDVDAALNSMVATKAMDALVPKEYRAVAHHMVAMRAAPRLLLASAAALLHGFDVREDLLLHALVAAYTFEQATQGMAVAVLAALDEVVGDGSSDATHDKRHWQDGGLQGLLEACTAGESQPSCQEIGESAFDFFQDLAVKTRPKGTPDAGSEDDTPKGMSKXXXXXXXMATSIPALGAAAAAAPPQPRRRFPGPRRRGNAPPKSPLVAVIRRNEHLTPAARVALNMARVMRAQGRARRKEARARARGMYQWGGMFAMPPPDEEGSSGRNGARLSEVDAGKGGXXXXXXXGARDKRYWLRLGRRAYRECHVEMEEGDALSGDAGGDGALTQSGD 1650 MLLLCSRCVLLLLITCLLAYLPADEAKGRDSKSKKGREDVSAGSSKRPSIEALGKALRVVLGPELGILEGEWNKTRTDLQQGLDGVEAGVRGELERAKRQAEQQTRLWKQSADAQVQQLLNQWLSDDGLKTTFSAYNYWRGVAEGARLKRLCKDLGLSDAIAARAAAALNAKIPPKALTAMAVATNVTAEIVADTVEAPRNAGASAAEVMAELIEWAEDVDAALNSMVATKAMDALVPKEYRAVAHHMVAMRAAPRLLLASAAALLHGFDVREDLLLHALVAAYTFEQATQGMAVAVLAALDEVVGDGSSDATHDKRHWQDGGLQGLLEACTAGESQPSCQEIGESAFDFFQDLAVKTRPKGTPDAGSEDDTPKGMSKXXXXXXXMATSIPALGAAAAAAPPQPRRRFPGPRRRGNAPPKSPLVAVIRRNEHLTPAARVALNMARVMRAQGRARRKEARARARGMYQWGGMFAMPPPDEEGSSGRNGARLSEVDAGKGGXXXXXXXGARDKRYWLRLGRRAYRECHVEMEEGDALSGDAGGDGALTQSGD Sbjct: 1 MLLLCSRCVLLLLITCLLAYLPADEAKGRDSKSKKGREDVSAGSSKRPSIEALGKALRVVLGPELGILEGEWNKTRTDLQQGLDGVEAGVRGELERAKRQAEQQTRLWKQSADAQVQQLLNQWLSDDGLKTTFSAYNYWRGVAEGARLKRLCKDLGLSDAIAARAAAALNAKIPPKALTAMAVATNVTAEIVADTVEAPRNAGASAAEVMAELIEWAEDVDAALNSMVATKAMDALVPKEYRAVAHHMVAMRAAPRLLLASAAALLHGFDVREDLLLHALVAAYTFEQATQGMAVAVLAALDEVVGDGSSDATHDKRHWQDGGLQGLLEACTAGESQPSCQEIGESAFDFFQDLAVKTRPKGTPDAGSEDDTPKGMSKXXXXXXXMATSIPALGAAAAAAPPQPRRRFPGPRRRGNAPPKSPLVAVIRRNEHLTPAARVALNMARVMRAQGRARRKEARARARGMYQWGGMFAMPPPDEEGSSGRNGARLSEVDAGKGGXXXXXXXGARDKRYWLRLGRRAYRECHVEMEEGDALSGDAGGDGALTQSGD 550 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9210 ID=mRNA_9210|Name=jgi.p|Trimin1|349226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=773bp|location=Sequence derived from alignment at Contig_39:399891..403284- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGGGCTGCTGCCCAGCGTGGCTGACGCTGGTGGAGGGGGCCGTTAAGGCGback to top protein sequence of jgi.p|Trimin1|349226 >Trimin1|349226|estExt_Genemark1.C_Ctg_390052 ID=Trimin1|349226|estExt_Genemark1.C_Ctg_390052|Name=jgi.p|Trimin1|349226|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=215bp MGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYback to top mRNA from alignment at Contig_39:399891..403284- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9210 ID=mRNA_9210|Name=jgi.p|Trimin1|349226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3394bp|location=Sequence derived from alignment at Contig_39:399891..403284- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_39:399891..403284- >mRNA_9210 ID=mRNA_9210|Name=jgi.p|Trimin1|349226|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=645bp|location=Sequence derived from alignment at Contig_39:399891..403284- (Tribonema minus UTEX_B_3156 )back to top |