mRNA_9210 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349226
Unique NamemRNA_9210
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A835Z1Y4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y4_9STRA)

HSP 1 Score: 399 bits (1026), Expect = 1.400e-139
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 2
Query:   95 MGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELLPWRQSRMAPAKGESPVTANTEQLTQPAAATREARTSRGRKGTRRRRVTLVTVRSRASVRAAARGATVAAQSR 736
            MGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELLPWRQSRMAPAKGESPVTANTEQLTQPAAATREARTSRGRKGTRRRRVTLVTVRSRASVRAAARGATVAAQSR
Sbjct:    1 MGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELLPWRQSRMAPAKGESPVTANTEQLTQPAAATREARTSRGRKGTRRRRVTLVTVRSRASVRAAARGATVAAQSR 214          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: D7G8A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A3_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.550e-30
Identity = 55/131 (41.98%), Postives = 89/131 (67.94%), Query Frame = 2
Query:  122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIME 514
            L  ++  FED+G+T ++ P    +HE L+VAFLA TWA+CYQ QP+Q  + AP+ + I+ S N +++  R+ F  +++ +E +++    L+ +G D+ R+  +LAEST+FRK  KP+TIPGKLW T K+ +
Sbjct:    2 LARIKEYFEDRGVTASNLPKVIVVHECLSVAFLALTWAVCYQIQPTQGPVLAPINKTIQNSNNAFIVRSRQSFEALISKSEKRLS-QDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKLSQ 131          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A7S0WNF0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WNF0_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 1.020e-17
Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSEN-RWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKI 508
            +  ++  F +QG+T AD P A  +HE++++ F A+TW + YQTQP ++     LA A+   +  ++++   +   G       K +   R+S    D  RLT + AES  FR  IKP+T+PGKLWA WK+
Sbjct:    1 MGKIKDYFVEQGLTVADIPKAIVLHEVVSIGFAAATWMVAYQTQPGKT-----LAMAVPADKRPKFLVNGYKAAMGAAKKQVEKTSFLKRIS----DPERLTVSCAESICFRGIIKPVTVPGKLWAAWKL 121          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A7S0IM15_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IM15_MICPS)

HSP 1 Score: 78.6 bits (192), Expect = 2.550e-14
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSS----QGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIME 514
            +  ++  F +QG+ P D P AF  HE+++VAF ASTW  CY  QPS + +  PLA+    ++          F   +A ++AK+     L      +     RLT +LAES +FR +IKPIT  GKL+ ++K ++
Sbjct:    1 MGRIKDYFVEQGLGPKDIPVAFVFHEVISVAFAASTWVACYGIQPSAT-ICRPLAKLPIAAK------AAGAFEKALAFSDAKVGKMTWLKKVPIVKNAAPRRLTVSLAESLMFRGAIKPITFGGKLYLSYKFVQ 128          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A7S3XSQ9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSQ9_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 1.470e-13
Identity = 46/165 (27.88%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEA-----------------------------------KIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIM 511
            ++ ++  F ++G   ++ P A A++E+L ++FL STW+ICYQ QP QSA+     + ++++E      +  G+   V SA++                                   KI  S  +     +T +L  +  +S++FRK+ KP+TIP K+W TWKI+
Sbjct:   27 INDIKKYFGEKGFEASEIPKAIAVYEILGLSFLVSTWSICYQLQPHQSAVLKSCRQFLQSNEQALPKFLSTGYQNAVHSADSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIPGKI--SEIIGGGFLNTEKLVASYIQSSVFRKACKPVTIPAKIWLTWKIL 189          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A4S087_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S087_OSTLU)

HSP 1 Score: 75.1 bits (183), Expect = 3.990e-13
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 2
Query:  122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIM 511
            +   R  F D+G+TP D   AF  HE+++VAF ASTW   Y  +PS++ L  PLA+  + +E    +  R+  A             P L  +  +  RLT +LAES  FR  IKPIT  GKLW +++ +
Sbjct:    1 MGRAREYFVDKGLTPTDVVPAFVFHEVISVAFAASTWIAAYAIEPSRTVL-KPLAKT-KVAEKAAPL-FRKTLAAAAKQTAKATTRVPAL--RAANAERLTLSLAESLFFRGCIKPITFGGKLWLSYQFI 125          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A7S0GV26_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GV26_MICPS)

HSP 1 Score: 75.5 bits (184), Expect = 5.290e-13
Identity = 54/153 (35.29%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   92 AMGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIA-------------ASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIM 511
            A   GG  G +  ++  F DQG+T AD P A   HE+++V F A TW+ CY  QPS + +  P+A     S+      V   F   +A ++ K+A             A+PR         RLT +LAES +FR SIKPIT   KL+ ++K +
Sbjct:   30 AKSEGGIKGSVSRVKEYFTDQGLTAADLPAALIFHEVISVGFAAFTWSACYGIQPSVT-IARPMAGLPGASK------VAGAFDRALAFSDKKVANMKWLKKVPVVKHAAPR---------RLTVSLAESLVFRGSIKPITFGAKLYLSYKFV 166          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: C1DY48_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DY48_MICCC)

HSP 1 Score: 78.6 bits (192), Expect = 6.640e-13
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSS----QGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIME 514
            +  ++  F +QG+ P D P AF  HE+++VAF ASTW  CY  QPS + +  PLA+    ++          F   +A ++AK+     L      +     RLT +LAES +FR +IKPIT  GKL+ ++K ++
Sbjct:    1 MGRIKDYFVEQGLGPKDIPVAFVFHEVISVAFAASTWVACYGIQPSAT-ICRPLAKLPIAAK------AAGAFEKALAFSDAKVGKMTWLKKVPIVKNAAPRRLTVSLAESLMFRGAIKPITFGGKLYLSYKFVQ 128          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A090M7Q6_OSTTA (Unnamed product n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M7Q6_OSTTA)

HSP 1 Score: 73.9 bits (180), Expect = 1.390e-12
Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 2
Query:  122 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVAS-----AEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELL 520
            +  ++  F D+G+ P D   AF  HE +++AF ASTW   Y  +P+++ L     R +R ++    M    G A  +A+     A  +I A  R S++     RLT +LAES +FR SIKPIT  GKLW +++ ++ L
Sbjct:    1 MGRVKRYFIDRGLGPEDLIPAFVFHETISIAFAASTWIAAYAIEPTRTVL-----RPLRGTKAAKAMAKPFGAALELATKQTAKAVTRIPALKRASAE-----RLTVSLAESLMFRGSIKPITFGGKLWLSYEFVKWL 128          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A4Q6D0M9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6D0M9_9PROT)

HSP 1 Score: 68.6 bits (166), Expect = 9.490e-11
Identity = 44/129 (34.11%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  137 GVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFA-PLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELL 520
            G  +D+G  P+D P A  IHELL +  LA TW++CY    SQS +F  PLA                     V S++   A +  L +  + ++ +  +  ES+  RK I+P+T+PGK++ T+K++ELL
Sbjct:   14 GKLKDKGFGPSDIPKAIFIHELLGMFMLALTWSLCYFYPLSQSPMFVKPLA---------------------VISSKMPAALAKSLEANKFLSSPIGVSYVESSCLRKLIRPLTLPGKVFLTFKLVELL 121          
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Match: A0A836CG08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG08_9STRA)

HSP 1 Score: 998 bits (2580), Expect = 0.000e+0
Identity = 550/550 (100.00%), Postives = 550/550 (100.00%), Query Frame = 1
Query:    1 MLLLCSRCVLLLLITCLLAYLPADEAKGRDSKSKKGREDVSAGSSKRPSIEALGKALRVVLGPELGILEGEWNKTRTDLQQGLDGVEAGVRGELERAKRQAEQQTRLWKQSADAQVQQLLNQWLSDDGLKTTFSAYNYWRGVAEGARLKRLCKDLGLSDAIAARAAAALNAKIPPKALTAMAVATNVTAEIVADTVEAPRNAGASAAEVMAELIEWAEDVDAALNSMVATKAMDALVPKEYRAVAHHMVAMRAAPRLLLASAAALLHGFDVREDLLLHALVAAYTFEQATQGMAVAVLAALDEVVGDGSSDATHDKRHWQDGGLQGLLEACTAGESQPSCQEIGESAFDFFQDLAVKTRPKGTPDAGSEDDTPKGMSKXXXXXXXMATSIPALGAAAAAAPPQPRRRFPGPRRRGNAPPKSPLVAVIRRNEHLTPAARVALNMARVMRAQGRARRKEARARARGMYQWGGMFAMPPPDEEGSSGRNGARLSEVDAGKGGXXXXXXXGARDKRYWLRLGRRAYRECHVEMEEGDALSGDAGGDGALTQSGD 1650
            MLLLCSRCVLLLLITCLLAYLPADEAKGRDSKSKKGREDVSAGSSKRPSIEALGKALRVVLGPELGILEGEWNKTRTDLQQGLDGVEAGVRGELERAKRQAEQQTRLWKQSADAQVQQLLNQWLSDDGLKTTFSAYNYWRGVAEGARLKRLCKDLGLSDAIAARAAAALNAKIPPKALTAMAVATNVTAEIVADTVEAPRNAGASAAEVMAELIEWAEDVDAALNSMVATKAMDALVPKEYRAVAHHMVAMRAAPRLLLASAAALLHGFDVREDLLLHALVAAYTFEQATQGMAVAVLAALDEVVGDGSSDATHDKRHWQDGGLQGLLEACTAGESQPSCQEIGESAFDFFQDLAVKTRPKGTPDAGSEDDTPKGMSKXXXXXXXMATSIPALGAAAAAAPPQPRRRFPGPRRRGNAPPKSPLVAVIRRNEHLTPAARVALNMARVMRAQGRARRKEARARARGMYQWGGMFAMPPPDEEGSSGRNGARLSEVDAGKGGXXXXXXXGARDKRYWLRLGRRAYRECHVEMEEGDALSGDAGGDGALTQSGD
Sbjct:    1 MLLLCSRCVLLLLITCLLAYLPADEAKGRDSKSKKGREDVSAGSSKRPSIEALGKALRVVLGPELGILEGEWNKTRTDLQQGLDGVEAGVRGELERAKRQAEQQTRLWKQSADAQVQQLLNQWLSDDGLKTTFSAYNYWRGVAEGARLKRLCKDLGLSDAIAARAAAALNAKIPPKALTAMAVATNVTAEIVADTVEAPRNAGASAAEVMAELIEWAEDVDAALNSMVATKAMDALVPKEYRAVAHHMVAMRAAPRLLLASAAALLHGFDVREDLLLHALVAAYTFEQATQGMAVAVLAALDEVVGDGSSDATHDKRHWQDGGLQGLLEACTAGESQPSCQEIGESAFDFFQDLAVKTRPKGTPDAGSEDDTPKGMSKXXXXXXXMATSIPALGAAAAAAPPQPRRRFPGPRRRGNAPPKSPLVAVIRRNEHLTPAARVALNMARVMRAQGRARRKEARARARGMYQWGGMFAMPPPDEEGSSGRNGARLSEVDAGKGGXXXXXXXGARDKRYWLRLGRRAYRECHVEMEEGDALSGDAGGDGALTQSGD 550          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349226 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835Z1Y4_9STRA1.400e-139100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G8A3_ECTSI8.550e-3041.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0WNF0_9CHLO1.020e-1736.15Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S0IM15_MICPS2.550e-1435.56Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S3XSQ9_HETAK1.470e-1327.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A4S087_OSTLU3.990e-1336.92Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A7S0GV26_MICPS5.290e-1335.29Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1DY48_MICCC6.640e-1335.56Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A090M7Q6_OSTTA1.390e-1235.51Unnamed product n=2 Tax=Ostreococcus tauri TaxID=7... [more]
A0A4Q6D0M9_9PROT9.490e-1134.11Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
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BLAST of jgi.p|Trimin1|349226 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CG08_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_39contigContig_39:399891..403284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349226|estExt_Genemark1.C_Ctg_390052
Max annot lvl2759|Eukaryota
EggNOG OGs2D0D4@1|root,2SDR5@2759|Eukaryota
Evalue4.18e-31
Seed ortholog2880.D7G8A3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_003730.1
TranscriptId349548
TrackFilteredModels1
ProteinId349226
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349226gene_9210Tribonema minus UTEX_B_3156 geneContig_39 399891..403284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349226Trimin1|349226|estExt_Genemark1.C_Ctg_390052Tribonema minus UTEX_B_3156 polypeptideContig_39 399925..401914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9210_4exon_9210_4Tribonema minus UTEX_B_3156 exonContig_39 399891..400197 -
exon_9210_3exon_9210_3Tribonema minus UTEX_B_3156 exonContig_39 400825..400903 -
exon_9210_2exon_9210_2Tribonema minus UTEX_B_3156 exonContig_39 401622..401922 -
exon_9210_1exon_9210_1Tribonema minus UTEX_B_3156 exonContig_39 403199..403284 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9210UTR3_9210Tribonema minus UTEX_B_3156 three_prime_UTRContig_39 399891..399924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9210CDS_9210Tribonema minus UTEX_B_3156 CDSContig_39 401622..401914 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9210UTR5_9210Tribonema minus UTEX_B_3156 five_prime_UTRContig_39 403199..403284 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9210 ID=mRNA_9210|Name=jgi.p|Trimin1|349226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=773bp|location=Sequence derived from alignment at Contig_39:399891..403284- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGGCTGCTGCCCAGCGTGGCTGACGCTGGTGGAGGGGGCCGTTAAGGCG
CATAAACGCAGGAACGGCTTGGCAGCTTTTCCTCAGGCACAGCCATGGGG
GTCGGCGGCGGCGGTGGACCGCTGGACCACCTCCGCGGCGTCTTCGAGGA
CCAGGGCATCACCCCCGCGGACTTCCCCACCGCCTTTGCCATCCACGAGC
TGCTCGCAGTCGCCTTTCTCGCGTCCACATGGGCCATCTGCTACCAGACG
CAGCCCTCGCAGAGCGCGCTGTTCGCGCCGCTCGCGCGCGCGATTCGCAC
TAGTGAGAACCGCTGGGTAATGGGGGTGCGGGAGGGGTTCGCGGGGGTGG
TGGCGAGCGCCGAGGCGAAGATCGCAGCGTCACCGAGGCTGAGCAGCCAA
GGCTGGGACACCGCCAGGCTCACAACAGCGCTAGCAGAGAGCACCATTTT
CCGCAAGAGCATTAAGCCAATAACCATCCCCGGCAAACTGTGGGCTACGT
GGAAGATCATGGAGCTGCTGCCGTGGCGGCAGTCGCGAATGGCACCGGCA
AAGGGAGAGTCACCAGTTACTGCAAACACCGAGCAATTGACGCAACCAGC
AGCTGCCACTCGCGAAGCACGGACATCAAGGGGTAGGAAGGGCACCCGCA
GGCGGAGAGTAACTCTCGTCACTGTCAGAAGCAGGGCCAGCGTGCGCGCA
GCTGCGCGCGGGGCGACTGTTGCTGCACAATCGAGATAAACATCATCACA
TCATGCACTGATGTGCAATCTCA
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protein sequence of jgi.p|Trimin1|349226

>Trimin1|349226|estExt_Genemark1.C_Ctg_390052 ID=Trimin1|349226|estExt_Genemark1.C_Ctg_390052|Name=jgi.p|Trimin1|349226|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=215bp
MGVGGGGGPLDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICY
QTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLS
SQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIMELLPWRQSRMA
PAKGESPVTANTEQLTQPAAATREARTSRGRKGTRRRRVTLVTVRSRASV
RAAARGATVAAQSR*
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mRNA from alignment at Contig_39:399891..403284-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9210 ID=mRNA_9210|Name=jgi.p|Trimin1|349226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3394bp|location=Sequence derived from alignment at Contig_39:399891..403284- (Tribonema minus UTEX_B_3156 )
GGGGCTGCTGCCCAGCGTGGCTGACGCTGGTGGAGGGGGCCGTTAAGGCG CATAAACGCAGGAACGGCTTGGCAGCTTTTCCTCAGGTAAGCTACTATAA TCTGTGCGCTACTACTGTGCGCACAGGAGCTGCGAGAGTGTGGATCGAGG CAGCAGCAGTTGTAGCTCTCGAAGACTCGTCGCCTGCGCAGACAGCAATG CTTTCAAGAGTTGCTGCTTGCACTGCAATGCTGTTGGGGAAAGGTGATGG AGCTGGAACTGACAAGTCATCGGACATGCCCCCCCTCGACACTCTTGCCT GTGGCTCATCATCATTTAACAAATCGTGAGTAGGGATGCAACTGGCTTGT TTTTCCTCATCGACAGCAATCGATGATGGCACGGTTTGACAGGGCTTACA GTCGTATTCTGAAAGAAACAACCAGGTTCAACTTCACGAAAAACAGCGGG CATTCATTTGTTACCTAATGTATAGCAGTAGGTGTATTAGAGCGACAATT TCCTTAATGGTGGGGTATGCAGTGGGCGGCAAAGCAACATGGGATGCGGG GCAGCACCTGCAAACTTTGTGACAACACACCTGGGCGCACAGAGCAATAT CGAGGACCAAGTTGAACTTGAAGTAAGGACCTCCAGGGGGGAGTGTGCTT CACCCTGAAGTGGCAACGGAGGTAGTCGCATGCAGCCTTGCATTGGCATT GGTAGAAGTCGCAACCACGGCTCGAGCGTCGAAGCACCTGCAGAGCAGCC CAGCTGTTGCAACAGCAGGTTGTCTCAGCTGACCAAATCTTCAGAGTATG CTCCATCAGTGCATTCAGGACAATTCATTTGGCTTAGGCAGACGCAGCGC TGAGTCATTTGTTGTCATCATGCGTGGAAGATCTCACCGCATTACTGTTG TAATCACCCTCACAAATGCTATCACCTTGCATGGGGAATTACAGCAGATT ATCGTTGTTAATTCATTTGAGCAAACACCTAGAACTTGCAAGGCCTACTG TGTGTAACTTTGGCGGTTGCGCGAGGAGGCGGTGCGCTTAGTCGCCTTCA CAACCTACAATCACTGGCTCAAACGCAATTGCTAGGGTACTACTACTGTT TGCCTACATTCTCAGGCACATTCAGCACTGCCATAAACGCGATCGCCAAG GTAGTGCTACTGCTTGCCTACATCCTCGGGCACACCCATCACTGCCACAA ACACACTGCTGATCTACTGTCTGCCTACACTCTCAGGTACACCCATCACT GCCATAAACACAACTGCTGATCTTCTGCCTGCCTACACTCTCACGCACAC CGAACACTGCTGTAAACGCAATCGCCAATGTGTGATAATCTACTGCCTGC CTACCCTCTCAGGCACAGCCATGGGGGTCGGCGGCGGCGGTGGACCGCTG GACCACCTCCGCGGCGTCTTCGAGGACCAGGGCATCACCCCCGCGGACTT CCCCACCGCCTTTGCCATCCACGAGCTGCTCGCAGTCGCCTTTCTCGCGT CCACATGGGCCATCTGCTACCAGACGCAGCCCTCGCAGAGCGCGCTGTTC GCGCCGCTCGCGCGCGCGATTCGCACTAGTGAGAACCGCTGGGTAATGGG GGTGCGGGAGGGGTTCGCGGGGGTGGTGGCGAGCGCCGAGGCGAAGATCG CAGCGTCACCGAGGTGAGATGTGGTGTGCCGTCTGCGAGATGGCTGGGCT TTTGTTGTCGCCATTGTGCTTCTCGCAAGGTGATGTGCTGCTGTGCTGCT GGCCATTACGGTATTGCAGCTTCACCGAGGTGAGAGGTGGTGTGCTGTCT GCAATGATGGCTAGGCGTCTGTGGTGTCCATTGTGCTTCTCGCAAGGATA ATCAGAATGCGCTGCTTGCCATCATGGCGATGCCACTGTATTACAGTGAG CAGGCCTTGTTGTCTGCTGCAATGGGCCACGCGCACAATTCTCCCCGTCA TTAGTTGCTGATGCGTCGCTTGCCGTAAGTGTGTAGCACGCTAATGTCTT CGTTGCGTTGGGGCAAGCGGAGTAGAAGCACCACGTTCCGCTCCTCTCTG TTCTTGACATTGTGATGGCTGTGATGGCTGCAGAAATGCATTGCAGTTTG CGGCTCGCCTCTCTCACTTCTTTGCGCGCAATGTGGCATTGGTTGACACC TTCTCTTTCTGCACAGTGACCCAGAATCTGGCCTGTCCCAAGGGGATTGA ACTTCACTTCACGAACTCTAACCTGACTTGTGCATTCACTCGCAGGTGCG CTTGAGTTCGAGGCTTGCAACTGTGGCTAAATGCGCCTGTGCAGCCAACG CGGGGACACCTACGTAACCCTAATGCTATCACTAAGGTTGTGCTGCCTCT GAACGTGCTTGTGGCCTGTCGTGCTGCGCAGGCTGAGCAGCCAAGGCTGG GACACCGCCAGGCTCACAACAGCGCTAGCAGAGAGCACCATTTTCCGCAA GAGCATTAAGGCAAGTCGCATGATCTTCTGTGAGTACATTGGTGGCCAAT TCAACGTTGATATGGTTCAACAAGTTCAAGTGAGCTGCCCTCTGTGTGTG CTGACCAGCTTGCTGTTGTCCTTGAGAGCCGTTCCATGTACATGTCATAC AAGCAGGCTTGTTCGACGCATTGAGCAGGGCAATCTTGCAACCTGCGTTG CCCCACAGACACATGCAGCTTCGATATTTATCGATCAAGCAGCGTTGAAG GCCGAGCACACAACTTTTGCGTGCTGACCTTGTTAAGTTCAAAAGAAGAC TACGAAACAAGGCGTGCGTCACGTGTGATCTGGTCAACCCAAATGCACTT GAAGTACGCTATTGAAGTACCATCACGGTGACATGGTGGCGAAGCGCAGC TGCCAAGCTGTGAGAATGTAGACAAGTGCCTTGCACATGAAGTCCGTTGT GATGTGACGCTTCTTCATTCCCCCTGTCCCGCCCCTACCTGGCAACTCGG TCGTTGAGCCATGGATCTGAACGCTCAGGGCAACTTTAGATAGCATCGTT GAAGATTCATGTTGTAGTACTGGATTTGTCTTGGCGTCAGTGCGACTCAT TCGTGCAACTTTGTGCGCCTCTCTCACTGCGCCCCAGCCAATAACCATCC CCGGCAAACTGTGGGCTACGTGGAAGATCATGGAGCTGCTGCCGTGGCGG CAGTCGCGAATGGCACCGGCAAAGGGAGAGTCACCAGTTACTGCAAACAC CGAGCAATTGACGCAACCAGCAGCTGCCACTCGCGAAGCACGGACATCAA GGGGTAGGAAGGGCACCCGCAGGCGGAGAGTAACTCTCGTCACTGTCAGA AGCAGGGCCAGCGTGCGCGCAGCTGCGCGCGGGGCGACTGTTGCTGCACA ATCGAGATAAACATCATCACATCATGCACTGATGTGCAATCTCA
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Coding sequence (CDS) from alignment at Contig_39:399891..403284-

>mRNA_9210 ID=mRNA_9210|Name=jgi.p|Trimin1|349226|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=645bp|location=Sequence derived from alignment at Contig_39:399891..403284- (Tribonema minus UTEX_B_3156 )
ATGGGGGTCGGCGGCGGCGGTGGACCGCTGGACCACCTCCGCGGCGTCTT
CGAGGACCAGGGCATCACCCCCGCGGACTTCCCCACCGCCTTTGCCATCC
ACGAGCTGCTCGCAGTCGCCTTTCTCGCGTCCACATGGGCCATCTGCTAC
CAGACGCAGCCCTCGCAGAGCGCGCTGTTCGCGCCGCTCGCGCGCGCGAT
TCGCACTAGTGAGAACCGCTGGGTAATGGGGGTGCGGGAGGGGTTCGCGG
GGGTGGTGGCGAGCGCCGAGGCGAAGATCGCAGCGTCACCGAGGCTGAGC
AGCCAAGGCTGGGACACCGCCAGGCTCACAACAGCGCTAGCAGAGAGCAC
CATTTTCCGCAAGAGCATTAAGCCAATAACCATCCCCGGCAAACTGTGGG
CTACGTGGAAGATCATGGAGCTGCTGCCGTGGCGGCAGTCGCGAATGGCA
CCGGCAAAGGGAGAGTCACCAGTTACTGCAAACACCGAGCAATTGACGCA
ACCAGCAGCTGCCACTCGCGAAGCACGGACATCAAGGGGTAGGAAGGGCA
CCCGCAGGCGGAGAGTAACTCTCGTCACTGTCAGAAGCAGGGCCAGCGTG
CGCGCAGCTGCGCGCGGGGCGACTGTTGCTGCACAATCGAGATAA
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