mRNA_9165 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165653
Unique NamemRNA_9165
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165653 vs. uniprot
Match: A0A835YWP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP5_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.370e-89
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1 
Query:    1 MENGDIDILERENEASPPLAPLRQQPNAFGLKHTCNRMCLHGRKRYYCKECGGASIXXXXXXXXXXXXXKRSRGGAGTYEXXXXXXXXXXXRGRIPCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPALATKCEHGNKLKCQRCGGKPIKGAATGGAEAQDNILSAGAEVPGEDAAAAAGDAVAMRADAASHQERTAAV 657
            MENGDIDILERENEASPPLAPLRQQPNAFGLKHTCNRMCLHGRKRYYCKECGGASIXXXXXXXXXXXXXKRSRGGAGTYEXXXXXXXXXXXRGRIPCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPALATKCEHGNKLKCQRCGGKPIKGAATGGAEAQDNILSAGAEVPGEDAAAAAGDAVAMRADAASHQERTAAV
Sbjct:    1 MENGDIDILERENEASPPLAPLRQQPNAFGLKHTCNRMCLHGRKRYYCKECGGASIXXXXXXXXXXXXXKRSRGGAGTYEXXXXXXXXXXXRGRIPCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPALATKCEHGNKLKCQRCGGKPIKGAATGGAEAQDNILSAGAEVPGEDAAAAAGDAVAMRADAASHQERTAAV 219
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BLAST of jgi.p|Trimin1|165653 vs. uniprot
Match: A0A835YRX8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 9.390e-16
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  436 KPALATKCEHGNKLKCQRCGGKPIKGAATGGAEAQDNILSAGAEVPGEDAAAAAGDAVAMRADAASHQERTAAV 657
            KPAL T+C HG K +CQ CGGKPIKGA +GGAE Q  + +A AEV G++ AA  G A+ MRADA S+QERT AV
Sbjct:   51 KPALTTECVHGRKQRCQLCGGKPIKGAVSGGAEQQHYVAAAAAEV-GDNPAA--GVAMTMRADAPSYQERTVAV 121
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165653 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YWP5_9STRA1.370e-89100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRX8_9STRA9.390e-1662.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_39contigContig_39:60034..60693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165653|e_gw1.39.45.1
Hectar predicted targeting categoryother localisation
TranscriptId165975
TrackFilteredModels1
ProteinId165653
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165653gene_9165Tribonema minus UTEX_B_3156 geneContig_39 60034..60693 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9165_1exon_9165_1Tribonema minus UTEX_B_3156 exonContig_39 60034..60693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9165CDS_9165Tribonema minus UTEX_B_3156 CDSContig_39 60034..60693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165653Trimin1|165653|e_gw1.39.45.1Tribonema minus UTEX_B_3156 polypeptideContig_39 60034..60693 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9165 ID=mRNA_9165|Name=jgi.p|Trimin1|165653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=660bp|location=Sequence derived from alignment at Contig_39:60034..60693- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAATGGCGACATCGACATCTTAGAGCGCGAGAATGAAGCAAGCCC
TCCACTGGCGCCGCTGCGACAACAGCCCAACGCATTTGGGCTGAAACACA
CGTGCAATCGCATGTGTCTGCACGGGCGGAAGCGCTATTACTGCAAGGAG
TGCGGCGGCGCTAGCATATGCGCCCACATGCGGCGGCGCACGACGTGCCA
GGAGTGTAAGCGCAGCCGCGGCGGCGCAGGCACCTATGAGCACGGGCACC
GGCGCAGGCACTGCGAGGAGTGCCGCGGCCGCATCCCGTGCAAGCATGGG
CGGCGGCGCTATCGCTGCACACAGTGCAACGGCGCAAGCATCTGCGACCA
CGGGCGACGGCGCGCACGGTGCAAGGAGTGCGGCGGGCCTGACATCTGCG
CCCACGGGCGGCAGCGCTCGATCTGCTGGGAGTGCAAGCCGGCGCTGGCG
ACGAAGTGCGAGCACGGGAACAAGCTCAAGTGCCAGCGATGTGGTGGCAA
GCCCATCAAAGGCGCTGCCACGGGGGGAGCAGAGGCGCAGGACAACATAC
TATCAGCCGGAGCAGAGGTACCAGGTGAAGATGCAGCTGCTGCAGCTGGA
GATGCCGTGGCTATGAGGGCTGATGCCGCTAGCCATCAGGAGCGGACGGC
AGCAGTTTAG
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protein sequence of jgi.p|Trimin1|165653

>Trimin1|165653|e_gw1.39.45.1 ID=Trimin1|165653|e_gw1.39.45.1|Name=jgi.p|Trimin1|165653|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=220bp
MENGDIDILERENEASPPLAPLRQQPNAFGLKHTCNRMCLHGRKRYYCKE
CGGASICAHMRRRTTCQECKRSRGGAGTYEHGHRRRHCEECRGRIPCKHG
RRRYRCTQCNGASICDHGRRRARCKECGGPDICAHGRQRSICWECKPALA
TKCEHGNKLKCQRCGGKPIKGAATGGAEAQDNILSAGAEVPGEDAAAAAG
DAVAMRADAASHQERTAAV*
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mRNA from alignment at Contig_39:60034..60693-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9165 ID=mRNA_9165|Name=jgi.p|Trimin1|165653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=660bp|location=Sequence derived from alignment at Contig_39:60034..60693- (Tribonema minus UTEX_B_3156 )
ATGGAAAATGGCGACATCGACATCTTAGAGCGCGAGAATGAAGCAAGCCC
TCCACTGGCGCCGCTGCGACAACAGCCCAACGCATTTGGGCTGAAACACA
CGTGCAATCGCATGTGTCTGCACGGGCGGAAGCGCTATTACTGCAAGGAG
TGCGGCGGCGCTAGCATATGCGCCCACATGCGGCGGCGCACGACGTGCCA
GGAGTGTAAGCGCAGCCGCGGCGGCGCAGGCACCTATGAGCACGGGCACC
GGCGCAGGCACTGCGAGGAGTGCCGCGGCCGCATCCCGTGCAAGCATGGG
CGGCGGCGCTATCGCTGCACACAGTGCAACGGCGCAAGCATCTGCGACCA
CGGGCGACGGCGCGCACGGTGCAAGGAGTGCGGCGGGCCTGACATCTGCG
CCCACGGGCGGCAGCGCTCGATCTGCTGGGAGTGCAAGCCGGCGCTGGCG
ACGAAGTGCGAGCACGGGAACAAGCTCAAGTGCCAGCGATGTGGTGGCAA
GCCCATCAAAGGCGCTGCCACGGGGGGAGCAGAGGCGCAGGACAACATAC
TATCAGCCGGAGCAGAGGTACCAGGTGAAGATGCAGCTGCTGCAGCTGGA
GATGCCGTGGCTATGAGGGCTGATGCCGCTAGCCATCAGGAGCGGACGGC
AGCAGTTTAG
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Coding sequence (CDS) from alignment at Contig_39:60034..60693-

>mRNA_9165 ID=mRNA_9165|Name=jgi.p|Trimin1|165653|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=660bp|location=Sequence derived from alignment at Contig_39:60034..60693- (Tribonema minus UTEX_B_3156 )
ATGGAAAATGGCGACATCGACATCTTAGAGCGCGAGAATGAAGCAAGCCC
TCCACTGGCGCCGCTGCGACAACAGCCCAACGCATTTGGGCTGAAACACA
CGTGCAATCGCATGTGTCTGCACGGGCGGAAGCGCTATTACTGCAAGGAG
TGCGGCGGCGCTAGCATATGCGCCCACATGCGGCGGCGCACGACGTGCCA
GGAGTGTAAGCGCAGCCGCGGCGGCGCAGGCACCTATGAGCACGGGCACC
GGCGCAGGCACTGCGAGGAGTGCCGCGGCCGCATCCCGTGCAAGCATGGG
CGGCGGCGCTATCGCTGCACACAGTGCAACGGCGCAAGCATCTGCGACCA
CGGGCGACGGCGCGCACGGTGCAAGGAGTGCGGCGGGCCTGACATCTGCG
CCCACGGGCGGCAGCGCTCGATCTGCTGGGAGTGCAAGCCGGCGCTGGCG
ACGAAGTGCGAGCACGGGAACAAGCTCAAGTGCCAGCGATGTGGTGGCAA
GCCCATCAAAGGCGCTGCCACGGGGGGAGCAGAGGCGCAGGACAACATAC
TATCAGCCGGAGCAGAGGTACCAGGTGAAGATGCAGCTGCTGCAGCTGGA
GATGCCGTGGCTATGAGGGCTGATGCCGCTAGCCATCAGGAGCGGACGGC
AGCAGTTTAG
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