mRNA_9156 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166442
Unique NamemRNA_9156
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166442 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:956785..957249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166442|e_gw1.44.7.1
Hectar predicted targeting categoryother localisation
TranscriptId166764
TrackFilteredModels1
ProteinId166442
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166442gene_9156Tribonema minus UTEX_B_3156 geneContig_44 956785..957249 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9156_1exon_9156_1Tribonema minus UTEX_B_3156 exonContig_44 956785..957249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9156CDS_9156Tribonema minus UTEX_B_3156 CDSContig_44 956785..957249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166442Trimin1|166442|e_gw1.44.7.1Tribonema minus UTEX_B_3156 polypeptideContig_44 956785..957249 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9156 ID=mRNA_9156|Name=jgi.p|Trimin1|166442|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_44:956785..957249+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACAGCAGGAAGCGCAAACCTCAGCAGTACGCTAACGGTCGGTGC
CGCTACGACTCTCAGCAATACGCTCTCCGTTGGTGGTGCCACGACGGTCG
GTAACACGCTGAGTGTAGCTGCTGCCACGACTCTCAGCAATACATTGGCT
GTAGCTGCCACAGTGTCATTTGGAGACAACGTGGTCATATCAAGCACCAA
GACGCTTACAGCAGGCAGCGCAAATCTCAGCAGTACGCTGACGGTCGGTG
CTGCCACGACTCTCAGCAGTACGCTGTCGGTCGGCGCTGCCGTGAATCTG
AGCAACACGCTGAGTGTAGCTGCTGCCACGACTCTCAGCAACACGTTGGC
GGTAGCTGCCACAGCGTCATTTGAAGATAACGTAGTCGTGTCAAGCACCA
AGATGCTCACAGCAGGAAGCGCAAACCTCAGCGGTACGCTGACGGTCGGT
GCCGCCACGACCATC
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protein sequence of jgi.p|Trimin1|166442

>Trimin1|166442|e_gw1.44.7.1 ID=Trimin1|166442|e_gw1.44.7.1|Name=jgi.p|Trimin1|166442|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
MLTAGSANLSSTLTVGAATTLSNTLSVGGATTVGNTLSVAAATTLSNTLA
VAATVSFGDNVVISSTKTLTAGSANLSSTLTVGAATTLSSTLSVGAAVNL
SNTLSVAAATTLSNTLAVAATASFEDNVVVSSTKMLTAGSANLSGTLTVG
AATTI
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mRNA from alignment at Contig_44:956785..957249+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9156 ID=mRNA_9156|Name=jgi.p|Trimin1|166442|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_44:956785..957249+ (Tribonema minus UTEX_B_3156 )
ATGCTCACAGCAGGAAGCGCAAACCTCAGCAGTACGCTAACGGTCGGTGC
CGCTACGACTCTCAGCAATACGCTCTCCGTTGGTGGTGCCACGACGGTCG
GTAACACGCTGAGTGTAGCTGCTGCCACGACTCTCAGCAATACATTGGCT
GTAGCTGCCACAGTGTCATTTGGAGACAACGTGGTCATATCAAGCACCAA
GACGCTTACAGCAGGCAGCGCAAATCTCAGCAGTACGCTGACGGTCGGTG
CTGCCACGACTCTCAGCAGTACGCTGTCGGTCGGCGCTGCCGTGAATCTG
AGCAACACGCTGAGTGTAGCTGCTGCCACGACTCTCAGCAACACGTTGGC
GGTAGCTGCCACAGCGTCATTTGAAGATAACGTAGTCGTGTCAAGCACCA
AGATGCTCACAGCAGGAAGCGCAAACCTCAGCGGTACGCTGACGGTCGGT
GCCGCCACGACCATC
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Coding sequence (CDS) from alignment at Contig_44:956785..957249+

>mRNA_9156 ID=mRNA_9156|Name=jgi.p|Trimin1|166442|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_44:956785..957249+ (Tribonema minus UTEX_B_3156 )
ATGCTCACAGCAGGAAGCGCAAACCTCAGCAGTACGCTAACGGTCGGTGC
CGCTACGACTCTCAGCAATACGCTCTCCGTTGGTGGTGCCACGACGGTCG
GTAACACGCTGAGTGTAGCTGCTGCCACGACTCTCAGCAATACATTGGCT
GTAGCTGCCACAGTGTCATTTGGAGACAACGTGGTCATATCAAGCACCAA
GACGCTTACAGCAGGCAGCGCAAATCTCAGCAGTACGCTGACGGTCGGTG
CTGCCACGACTCTCAGCAGTACGCTGTCGGTCGGCGCTGCCGTGAATCTG
AGCAACACGCTGAGTGTAGCTGCTGCCACGACTCTCAGCAACACGTTGGC
GGTAGCTGCCACAGCGTCATTTGAAGATAACGTAGTCGTGTCAAGCACCA
AGATGCTCACAGCAGGAAGCGCAAACCTCAGCGGTACGCTGACGGTCGGT
GCCGCCACGACCATC
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