mRNA_9145 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|156177
Unique Name	mRNA_9145
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|156177 vs. uniprot
Match: A0A836CD12_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD12_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.270e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 DDVNWAQRFSSLASELQVRSVLREAAPLYEHALAIREEKLGPTHPGTAQS 150
            DDVNWAQRFSSLASELQVRSVLREAAPLYEHALAIREEKLGPTHPGTAQS
Sbjct:    1 DDVNWAQRFSSLASELQVRSVLREAAPLYEHALAIREEKLGPTHPGTAQS 50

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|156177 vs. uniprot

BLAST of jgi.p|Trimin1|156177 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CD12_9STRA	1.270e-19	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_44	contig	Contig_44:911622..913052 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|156177\|gw1.44.136.1
Hectar predicted targeting category	other localisation
TranscriptId	156499
Track	FilteredModels1
ProteinId	156177

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156177	gene_9145	Tribonema minus UTEX_B_3156	gene	Contig_44 911622..913052 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9145_1	exon_9145_1	Tribonema minus UTEX_B_3156	exon	Contig_44 911622..913052 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9145	CDS_9145	Tribonema minus UTEX_B_3156	CDS	Contig_44 911622..913052 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156177	Trimin1\|156177\|gw1.44.136.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_44 911622..913052 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_44:911622..913052-
coding sequence from alignment at Contig_44:911622..913052-

spliced messenger RNA

>mRNA_9145 ID=mRNA_9145|Name=jgi.p|Trimin1|156177|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1431bp|location=Sequence derived from alignment at Contig_44:911622..913052- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGATGTCAACTGGGCGCAAAGGTTTTCCAGCCTGGCATCTGAGTTACA
GGTGCGCAGCGTACTGCGGGAGGCAGCGCCGTTGTACGAGCACGCGCTCG
CCATCCGCGAGGAGAAGCTGGGCCCGACGCATCCGGGCACGGCTCAGTCG
CTCAACAACCTAGCCTGTCTCCTCCAAGCTCAGGGCGTTTACGGCAAGGC
GGCGCCGTTGTACGAGCGCGCGGTCTCCATCCGCGAGGAGAAGCTGGGCC
CGAAGCATCCGCTCACGGCGAAGTCGTTTGGCAACCTCGCCCTTCTCTTC
AAAACTCAGGGCGATTACGATAAAGCGGCGCCGTTGTACGAGCGCGCGCT
TTCTATAGATGAGGAGGTGCTGGGCCCGACGCATCCGGACACGGCGACGT
CGCTCAACAACCTAGCCATGCTCCTCAAAGCGCAGGGCGATTACGATAAA
GCGGCGCCGTTGTACGCGCGCGCGCTCGCCATCCGCGAGGATGTGCTGGG
CCCGACGCATCCCTCCACGGCGACGTCGCTCAACAACCTCGCCTCACTCC
TCCAAGCTCAGGGCAAGTTTGCAGAGGCGGCGCCGTTGTTTGAGCGCGCG
CTCGCCATCCGCGAGGAGGTGCTGGGCCCGCCGCATCCAAATACGGCGAA
GTCGTATGGCAACCTCGCCTCGCTCCTCCGAGATCAGGGCAAGTTGGCGG
AGGCGGCGCCGTTGTACGCGCGCGCGCTCGCCATTCACGAGGAGGCATTG
GGCCCGACGCATCCGCTCATGGCGACGTCGCTCAACAACCTCGCCGGTCT
CCTTAAAGCTCAGGGCGATTACGGCAAGGCGGCGCCCTTGTACGAGCGCG
CGCTCGCCATCTGCGAGGAGACGCTGGGCCCCACGCATCCGCTCACGGCG
GCGTCGCTCAACAACCTCGCCGGTCTCCTCGAAGATCAGGGCAAGTTGGC
GGAGGCGGTGCCGTTGTACAAGCGCGTGCTCGGCATCCGCGAGGAGAGGC
TGGGCCCGACGCATCCGGACACAGCGCAGTCGCTCAACAACCTCGCCTTG
CTCCTCCAAGCTCAGGGCAAATTGGCGGAGGCGGCGCCGTTGTACGAGCG
CGCGCTCGCCATTTTCGAGGAAAAGCTGGGCCCGAAGCATCCCCACACGG
CGACGTCGCTCGACAACCTCGCCTGTCTCCTCGAAGCTCAGGGCGATTAC
GGCAAGGCGGCGCCGTTGTACAAGCGCGTGCTCGGCATCCGCGAGGAGAG
GCTGGGCCCGACGCATCCGGACACGGCGACGTCGCTCAACAACCTCGCAT
CTCTCCTCCAAGCTCAGGGCAAGTTGGCGGAGGCGGCGCCGTTGTACGAG
CGTGTGCTCGCCATCTGCGAGGAAAAGCTGGGACCGAAGCATCCGCTTAC
AGTGAAGTCACGCAACAACCTCGCTGCGCTT

protein sequence of jgi.p|Trimin1|156177

>Trimin1|156177|gw1.44.136.1 ID=Trimin1|156177|gw1.44.136.1|Name=jgi.p|Trimin1|156177|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=477bp
DDVNWAQRFSSLASELQVRSVLREAAPLYEHALAIREEKLGPTHPGTAQS
LNNLACLLQAQGVYGKAAPLYERAVSIREEKLGPKHPLTAKSFGNLALLF
KTQGDYDKAAPLYERALSIDEEVLGPTHPDTATSLNNLAMLLKAQGDYDK
AAPLYARALAIREDVLGPTHPSTATSLNNLASLLQAQGKFAEAAPLFERA
LAIREEVLGPPHPNTAKSYGNLASLLRDQGKLAEAAPLYARALAIHEEAL
GPTHPLMATSLNNLAGLLKAQGDYGKAAPLYERALAICEETLGPTHPLTA
ASLNNLAGLLEDQGKLAEAVPLYKRVLGIREERLGPTHPDTAQSLNNLAL
LLQAQGKLAEAAPLYERALAIFEEKLGPKHPHTATSLDNLACLLEAQGDY
GKAAPLYKRVLGIREERLGPTHPDTATSLNNLASLLQAQGKLAEAAPLYE
RVLAICEEKLGPKHPLTVKSRNNLAAL

mRNA from alignment at Contig_44:911622..913052-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9145 ID=mRNA_9145|Name=jgi.p|Trimin1|156177|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1431bp|location=Sequence derived from alignment at Contig_44:911622..913052- (Tribonema minus UTEX_B_3156 )
GACGATGTCAACTGGGCGCAAAGGTTTTCCAGCCTGGCATCTGAGTTACA
GGTGCGCAGCGTACTGCGGGAGGCAGCGCCGTTGTACGAGCACGCGCTCG
CCATCCGCGAGGAGAAGCTGGGCCCGACGCATCCGGGCACGGCTCAGTCG
CTCAACAACCTAGCCTGTCTCCTCCAAGCTCAGGGCGTTTACGGCAAGGC
GGCGCCGTTGTACGAGCGCGCGGTCTCCATCCGCGAGGAGAAGCTGGGCC
CGAAGCATCCGCTCACGGCGAAGTCGTTTGGCAACCTCGCCCTTCTCTTC
AAAACTCAGGGCGATTACGATAAAGCGGCGCCGTTGTACGAGCGCGCGCT
TTCTATAGATGAGGAGGTGCTGGGCCCGACGCATCCGGACACGGCGACGT
CGCTCAACAACCTAGCCATGCTCCTCAAAGCGCAGGGCGATTACGATAAA
GCGGCGCCGTTGTACGCGCGCGCGCTCGCCATCCGCGAGGATGTGCTGGG
CCCGACGCATCCCTCCACGGCGACGTCGCTCAACAACCTCGCCTCACTCC
TCCAAGCTCAGGGCAAGTTTGCAGAGGCGGCGCCGTTGTTTGAGCGCGCG
CTCGCCATCCGCGAGGAGGTGCTGGGCCCGCCGCATCCAAATACGGCGAA
GTCGTATGGCAACCTCGCCTCGCTCCTCCGAGATCAGGGCAAGTTGGCGG
AGGCGGCGCCGTTGTACGCGCGCGCGCTCGCCATTCACGAGGAGGCATTG
GGCCCGACGCATCCGCTCATGGCGACGTCGCTCAACAACCTCGCCGGTCT
CCTTAAAGCTCAGGGCGATTACGGCAAGGCGGCGCCCTTGTACGAGCGCG
CGCTCGCCATCTGCGAGGAGACGCTGGGCCCCACGCATCCGCTCACGGCG
GCGTCGCTCAACAACCTCGCCGGTCTCCTCGAAGATCAGGGCAAGTTGGC
GGAGGCGGTGCCGTTGTACAAGCGCGTGCTCGGCATCCGCGAGGAGAGGC
TGGGCCCGACGCATCCGGACACAGCGCAGTCGCTCAACAACCTCGCCTTG
CTCCTCCAAGCTCAGGGCAAATTGGCGGAGGCGGCGCCGTTGTACGAGCG
CGCGCTCGCCATTTTCGAGGAAAAGCTGGGCCCGAAGCATCCCCACACGG
CGACGTCGCTCGACAACCTCGCCTGTCTCCTCGAAGCTCAGGGCGATTAC
GGCAAGGCGGCGCCGTTGTACAAGCGCGTGCTCGGCATCCGCGAGGAGAG
GCTGGGCCCGACGCATCCGGACACGGCGACGTCGCTCAACAACCTCGCAT
CTCTCCTCCAAGCTCAGGGCAAGTTGGCGGAGGCGGCGCCGTTGTACGAG
CGTGTGCTCGCCATCTGCGAGGAAAAGCTGGGACCGAAGCATCCGCTTAC
AGTGAAGTCACGCAACAACCTCGCTGCGCTT

Coding sequence (CDS) from alignment at Contig_44:911622..913052-

>mRNA_9145 ID=mRNA_9145|Name=jgi.p|Trimin1|156177|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1431bp|location=Sequence derived from alignment at Contig_44:911622..913052- (Tribonema minus UTEX_B_3156 )
GACGATGTCAACTGGGCGCAAAGGTTTTCCAGCCTGGCATCTGAGTTACA
GGTGCGCAGCGTACTGCGGGAGGCAGCGCCGTTGTACGAGCACGCGCTCG
CCATCCGCGAGGAGAAGCTGGGCCCGACGCATCCGGGCACGGCTCAGTCG
CTCAACAACCTAGCCTGTCTCCTCCAAGCTCAGGGCGTTTACGGCAAGGC
GGCGCCGTTGTACGAGCGCGCGGTCTCCATCCGCGAGGAGAAGCTGGGCC
CGAAGCATCCGCTCACGGCGAAGTCGTTTGGCAACCTCGCCCTTCTCTTC
AAAACTCAGGGCGATTACGATAAAGCGGCGCCGTTGTACGAGCGCGCGCT
TTCTATAGATGAGGAGGTGCTGGGCCCGACGCATCCGGACACGGCGACGT
CGCTCAACAACCTAGCCATGCTCCTCAAAGCGCAGGGCGATTACGATAAA
GCGGCGCCGTTGTACGCGCGCGCGCTCGCCATCCGCGAGGATGTGCTGGG
CCCGACGCATCCCTCCACGGCGACGTCGCTCAACAACCTCGCCTCACTCC
TCCAAGCTCAGGGCAAGTTTGCAGAGGCGGCGCCGTTGTTTGAGCGCGCG
CTCGCCATCCGCGAGGAGGTGCTGGGCCCGCCGCATCCAAATACGGCGAA
GTCGTATGGCAACCTCGCCTCGCTCCTCCGAGATCAGGGCAAGTTGGCGG
AGGCGGCGCCGTTGTACGCGCGCGCGCTCGCCATTCACGAGGAGGCATTG
GGCCCGACGCATCCGCTCATGGCGACGTCGCTCAACAACCTCGCCGGTCT
CCTTAAAGCTCAGGGCGATTACGGCAAGGCGGCGCCCTTGTACGAGCGCG
CGCTCGCCATCTGCGAGGAGACGCTGGGCCCCACGCATCCGCTCACGGCG
GCGTCGCTCAACAACCTCGCCGGTCTCCTCGAAGATCAGGGCAAGTTGGC
GGAGGCGGTGCCGTTGTACAAGCGCGTGCTCGGCATCCGCGAGGAGAGGC
TGGGCCCGACGCATCCGGACACAGCGCAGTCGCTCAACAACCTCGCCTTG
CTCCTCCAAGCTCAGGGCAAATTGGCGGAGGCGGCGCCGTTGTACGAGCG
CGCGCTCGCCATTTTCGAGGAAAAGCTGGGCCCGAAGCATCCCCACACGG
CGACGTCGCTCGACAACCTCGCCTGTCTCCTCGAAGCTCAGGGCGATTAC
GGCAAGGCGGCGCCGTTGTACAAGCGCGTGCTCGGCATCCGCGAGGAGAG
GCTGGGCCCGACGCATCCGGACACGGCGACGTCGCTCAACAACCTCGCAT
CTCTCCTCCAAGCTCAGGGCAAGTTGGCGGAGGCGGCGCCGTTGTACGAG
CGTGTGCTCGCCATCTGCGAGGAAAAGCTGGGACCGAAGCATCCGCTTAC
AGTGAAGTCACGCAACAACCTCGCTGCGCTT