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Homology
BLAST of jgi.p|Trimin1|154976 vs. uniprot
Match: A0A835YS81_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS81_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.410e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1
Query: 1 ACEAVIAGMRAHVSNTDVQYWGARAACNLAVNDSIKTKLSVAGA 132
ACEAVIAGMRAHVSNTDVQYWGARAACNLAVNDSIKTKLSVAGA
Sbjct: 1 ACEAVIAGMRAHVSNTDVQYWGARAACNLAVNDSIKTKLSVAGA 44
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|154976|gw1.44.125.1 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 155298 |
| Track | FilteredModels1 |
| ProteinId | 154976 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9136 ID=mRNA_9136|Name=jgi.p|Trimin1|154976|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_44:882446..883456- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
GCGTGCGAGGCTGTGATAGCCGGCATGAGGGCCCACGTCTCAAACACCGA
CGTGCAGTATTGGGGTGCACGCGCTGCTTGCAACCTGGCCGTCAACGACT
CTATCAAGACCAAGCTCAGCGTGGCGGGAGCGTGCGAGGCGGTGGTGGCC
GGAATGAGGGCCCACCTCTCCAGCGCCGATGTGCAGCACTACGGCGTACG
GGCGGTGCACACCCTGCCAGTCAATGACATCATCAGGACCAAGTTCGGCG
ATGTGGGCGCGGCCGAGGCGGTGCTCTTAGGCATGAGAGCCCACGCCCCC
AACGCCGGCGTGCAGCACTACGGCGCATGGGCCGTGGAGACCATGGCAGT
CAACGACGCCATCAGGGCCAAGCTAGCCGCGGCGGGCGCGTGCGAGGTGG
TGGTCGCCGCCATGAGCGCACACGTCTCCAACGCCGACGTGCAGCTCCAT
GGCGCAACGGCCGTGTTCAGTCTGGCAGCCAACGACACCAACAGCACCAG
GCTCGGAGCGGCGGGCGCATGCGAGGCGGTGGTCGCCGGCATGCAGGCCC
ATGTCTCCAACACGGACGTGCAGCACTACGGCGCGTGGGCCGTGATCAAC
CTGGCTGCCAACGCCACCAACCAGGCCAAGCTCGGCGCGGCGGGCGCATG
CGATGCGGTGGTCGCCGGCATGAGGAACCACGTCTCCAACGCCGGCGTGC
AGCACTACGGCGCATGGGCCGTGTGCACCCTGGCTGCCAACAACGACACC
AACACGGCAAAGCTCTGCGGGGCGGGCGCGTGCAAGGCGGTGGTCGCCGG
CATGAGGGCCCACATTTCCAATGCCGACATGCAGCACTACGGCGCACGGG
CCGTGGAGACCATGGCAGTCAACGACACCAACAAGGCAAAGCTCTGCGCA
GCGGGCGCGTGCGAGGCGGTGGTCGCCAGCATGAGGGCCCACGTCTCCGA
CGCCGACGTGCAGCACTACGGCGCACGGGCCGTGGAGACCCTGGCAGCCG
ACAACACCGTC back to topprotein sequence of jgi.p|Trimin1|154976 >Trimin1|154976|gw1.44.125.1 ID=Trimin1|154976|gw1.44.125.1|Name=jgi.p|Trimin1|154976|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=337bp
ACEAVIAGMRAHVSNTDVQYWGARAACNLAVNDSIKTKLSVAGACEAVVA
GMRAHLSSADVQHYGVRAVHTLPVNDIIRTKFGDVGAAEAVLLGMRAHAP
NAGVQHYGAWAVETMAVNDAIRAKLAAAGACEVVVAAMSAHVSNADVQLH
GATAVFSLAANDTNSTRLGAAGACEAVVAGMQAHVSNTDVQHYGAWAVIN
LAANATNQAKLGAAGACDAVVAGMRNHVSNAGVQHYGAWAVCTLAANNDT
NTAKLCGAGACKAVVAGMRAHISNADMQHYGARAVETMAVNDTNKAKLCA
AGACEAVVASMRAHVSDADVQHYGARAVETLAADNTV back to topmRNA from alignment at Contig_44:882446..883456- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9136 ID=mRNA_9136|Name=jgi.p|Trimin1|154976|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_44:882446..883456- (Tribonema minus UTEX_B_3156 )
GCGTGCGAGGCTGTGATAGCCGGCATGAGGGCCCACGTCTCAAACACCGA
CGTGCAGTATTGGGGTGCACGCGCTGCTTGCAACCTGGCCGTCAACGACT
CTATCAAGACCAAGCTCAGCGTGGCGGGAGCGTGCGAGGCGGTGGTGGCC
GGAATGAGGGCCCACCTCTCCAGCGCCGATGTGCAGCACTACGGCGTACG
GGCGGTGCACACCCTGCCAGTCAATGACATCATCAGGACCAAGTTCGGCG
ATGTGGGCGCGGCCGAGGCGGTGCTCTTAGGCATGAGAGCCCACGCCCCC
AACGCCGGCGTGCAGCACTACGGCGCATGGGCCGTGGAGACCATGGCAGT
CAACGACGCCATCAGGGCCAAGCTAGCCGCGGCGGGCGCGTGCGAGGTGG
TGGTCGCCGCCATGAGCGCACACGTCTCCAACGCCGACGTGCAGCTCCAT
GGCGCAACGGCCGTGTTCAGTCTGGCAGCCAACGACACCAACAGCACCAG
GCTCGGAGCGGCGGGCGCATGCGAGGCGGTGGTCGCCGGCATGCAGGCCC
ATGTCTCCAACACGGACGTGCAGCACTACGGCGCGTGGGCCGTGATCAAC
CTGGCTGCCAACGCCACCAACCAGGCCAAGCTCGGCGCGGCGGGCGCATG
CGATGCGGTGGTCGCCGGCATGAGGAACCACGTCTCCAACGCCGGCGTGC
AGCACTACGGCGCATGGGCCGTGTGCACCCTGGCTGCCAACAACGACACC
AACACGGCAAAGCTCTGCGGGGCGGGCGCGTGCAAGGCGGTGGTCGCCGG
CATGAGGGCCCACATTTCCAATGCCGACATGCAGCACTACGGCGCACGGG
CCGTGGAGACCATGGCAGTCAACGACACCAACAAGGCAAAGCTCTGCGCA
GCGGGCGCGTGCGAGGCGGTGGTCGCCAGCATGAGGGCCCACGTCTCCGA
CGCCGACGTGCAGCACTACGGCGCACGGGCCGTGGAGACCCTGGCAGCCG
ACAACACCGTC back to topCoding sequence (CDS) from alignment at Contig_44:882446..883456- >mRNA_9136 ID=mRNA_9136|Name=jgi.p|Trimin1|154976|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1011bp|location=Sequence derived from alignment at Contig_44:882446..883456- (Tribonema minus UTEX_B_3156 )
GCGTGCGAGGCTGTGATAGCCGGCATGAGGGCCCACGTCTCAAACACCGA
CGTGCAGTATTGGGGTGCACGCGCTGCTTGCAACCTGGCCGTCAACGACT
CTATCAAGACCAAGCTCAGCGTGGCGGGAGCGTGCGAGGCGGTGGTGGCC
GGAATGAGGGCCCACCTCTCCAGCGCCGATGTGCAGCACTACGGCGTACG
GGCGGTGCACACCCTGCCAGTCAATGACATCATCAGGACCAAGTTCGGCG
ATGTGGGCGCGGCCGAGGCGGTGCTCTTAGGCATGAGAGCCCACGCCCCC
AACGCCGGCGTGCAGCACTACGGCGCATGGGCCGTGGAGACCATGGCAGT
CAACGACGCCATCAGGGCCAAGCTAGCCGCGGCGGGCGCGTGCGAGGTGG
TGGTCGCCGCCATGAGCGCACACGTCTCCAACGCCGACGTGCAGCTCCAT
GGCGCAACGGCCGTGTTCAGTCTGGCAGCCAACGACACCAACAGCACCAG
GCTCGGAGCGGCGGGCGCATGCGAGGCGGTGGTCGCCGGCATGCAGGCCC
ATGTCTCCAACACGGACGTGCAGCACTACGGCGCGTGGGCCGTGATCAAC
CTGGCTGCCAACGCCACCAACCAGGCCAAGCTCGGCGCGGCGGGCGCATG
CGATGCGGTGGTCGCCGGCATGAGGAACCACGTCTCCAACGCCGGCGTGC
AGCACTACGGCGCATGGGCCGTGTGCACCCTGGCTGCCAACAACGACACC
AACACGGCAAAGCTCTGCGGGGCGGGCGCGTGCAAGGCGGTGGTCGCCGG
CATGAGGGCCCACATTTCCAATGCCGACATGCAGCACTACGGCGCACGGG
CCGTGGAGACCATGGCAGTCAACGACACCAACAAGGCAAAGCTCTGCGCA
GCGGGCGCGTGCGAGGCGGTGGTCGCCAGCATGAGGGCCCACGTCTCCGA
CGCCGACGTGCAGCACTACGGCGCACGGGCCGTGGAGACCCTGGCAGCCG
ACAACACCGTC back to top
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