mRNA_909 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156833
Unique NamemRNA_909
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: A0A835ZKY0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKY0_9STRA)

HSP 1 Score: 375 bits (963), Expect = 4.910e-131
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1 
Query:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYGSPRYDDGDDDEWGXXXXXXXXXXXESRDGAPDRGGRGGGLRDAHERANLLHLLGWGLSKLPAARPSLEQFLAHPWAAAGRARSETPRAEMQT 612
            VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYGSPRYDDGDDDEWGXXXXXXXXXXXESRDGAPDRGGRGGGLRDAHERANLLHLLGWGLSKLPAARPSLEQFLAHPWAAAGRARSETPRAEMQT
Sbjct:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYGSPRYDDGDDDEWGXXXXXXXXXXXESRDGAPDRGGRGGGLRDAHERANLLHLLGWGLSKLPAARPSLEQFLAHPWAAAGRARSETPRAEMQT 204
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: A0A835YXT3_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-16
Identity = 53/114 (46.49%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYGSP 342
            VA AL  +H  GY H D+KP NL+R   G +K+ DFG   ++     +    P    GTPAFMSPEA  G GGT A DVWSL AT+  +V G  PF        L E+IMYG+P
Sbjct:  116 VAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRP---QGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFMGQN----LVEKIMYGAP 222
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: A0A836CE44_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE44_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.110e-14
Identity = 56/114 (49.12%), Postives = 64/114 (56.14%), Query Frame = 1 
Query:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGG--TEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYG 336
            VASAL  +H  GYAH DVKPGN++R   G+VKL DFG   R    P + A       GTPAFM PEA  G G   T A D W L AT   LV GR PF+  G    L + I+YG
Sbjct:  150 VASALQFIHERGYAHGDVKPGNILRFADGTVKLCDFGCCER----PEAAAETRGRPRGTPAFMPPEAFQGTGSGWTAAVDSWGLAATSFCLVRGRPPFSVAGR--GLFDSILYG 257
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: A0A1H7UKC0_9ACTN (Non-specific serine/threonine protein kinase n=2 Tax=Nonomuraea pusilla TaxID=46177 RepID=A0A1H7UKC0_9ACTN)

HSP 1 Score: 76.3 bits (186), Expect = 1.240e-12
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPF 288
            +A AL AVHA+G  H DVKPGN++ T  G+VKLGDFG  +R P S  +         GTPAF++PE   G+G T ASDV+SL ATL   + G  P+
Sbjct:  111 IARALRAVHAAGVLHRDVKPGNVLLTEEGNVKLGDFG-VSRSPDSGGTLTGG-GVVIGTPAFVAPEVARGQGCTAASDVFSLGATLYTAIEGESPY 204
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: A0A365GWQ2_9ACTN (Non-specific serine/threonine protein kinase n=1 Tax=Actinomadura craniellae TaxID=2231787 RepID=A0A365GWQ2_9ACTN)

HSP 1 Score: 75.9 bits (185), Expect = 1.370e-12
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERI 327
            V S L A+HA+G+ H DVKPGN++ T  G V L D+G A R                G+PA++SPE   G  GTEASD+WSL   L A V GR P+A    +GALA  +
Sbjct:  101 VLSVLDALHAAGFLHRDVKPGNVLLTDDGRVVLSDYGLAVRT--------GERTGFEGSPAYVSPEQARGESGTEASDLWSLGTLLYAAVEGRSPYAR---KGALASMV 198
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: UPI000859E9D0 (serine/threonine protein kinase n=1 Tax=Isoptericola variabilis TaxID=139208 RepID=UPI000859E9D0)

HSP 1 Score: 74.7 bits (182), Expect = 4.040e-12
Identity = 50/115 (43.48%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYGSPR 345
            VASAL A HA G  H DVKPGN++ T  G+  + DFG +  + G P    +     HGTPA+++PE   GR  T ASDV+SL ATL A++ G  PF  +    AL  +   G  R
Sbjct:  123 VASALAAAHALGIVHRDVKPGNVLITPDGAAHISDFGISHAM-GDPTLTGS--GTFHGTPAYLAPEVALGREATFASDVFSLGATLYAMLEGEPPFGTEPNPLALLHKAAAGQVR 234
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: UPI001F1C63BF (serine/threonine protein kinase n=1 Tax=Nocardioides sp. NGK65 TaxID=2897352 RepID=UPI001F1C63BF)

HSP 1 Score: 73.6 bits (179), Expect = 9.270e-12
Identity = 51/117 (43.59%), Postives = 65/117 (55.56%), Query Frame = 1 
Query:    4 ASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPF-ACDGGEGALAERIMYGSPRYD 351
            A AL   H +G  H DVKPGN++ TR G +KLGDFG A    GS AS  A      G+P +++PE  +G   T ASDVWSL A++   + G+ PF   D   GAL   +    PR D
Sbjct:  116 ADALAVAHEAGIVHRDVKPGNMLVTRDGHLKLGDFGIART--GSDASLTAT-GLVTGSPGYLAPEVAAGSSATAASDVWSLGASIFHTLTGKPPFDTSDNLMGALYRLVHEEPPRTD 229
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: UPI001356E13C (serine/threonine protein kinase n=1 Tax=Puerhibacterium puerhi TaxID=2692623 RepID=UPI001356E13C)

HSP 1 Score: 73.6 bits (179), Expect = 1.010e-11
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYGSPR 345
            VASAL A H  G  H DVKPGN++ T  G+  + DFG +  + G P    +     HGTPA+++PE   GR  T ASDV+SL ATL A++ G  PF  +    AL  +   G  R
Sbjct:  123 VASALAAAHELGIVHRDVKPGNVLITPDGAAHISDFGISHAM-GDPTLTGS--GTFHGTPAYLAPEVALGRAATFASDVFSLGATLYAMLEGEPPFGTEPNPLALLHKAAAGQVR 234
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: UPI00188CF651 (serine/threonine protein kinase n=1 Tax=Nocardioides islandensis TaxID=433663 RepID=UPI00188CF651)

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-11
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYGSPR 345
            V  AL A H +G  H DVKP N++ T  G+ KL DFG A R   S  + +   A   G+PA+++PE  +GR  TEASDVWSL ATL   + GR P+  D    A+   +    PR
Sbjct:  134 VTEALAAAHEAGIVHRDVKPSNILVTADGTAKLTDFGIA-RARDSTITASGMVA---GSPAYLAPEVAAGRPATEASDVWSLGATLYQALSGRQPYESDNVMSAMYRIVHEDPPR 244
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BLAST of jgi.p|Trimin1|156833 vs. uniprot
Match: UPI001C3320E5 (Serine/threonine-protein kinase PknD n=2 Tax=Amycolatopsis sp. CA-230715 TaxID=2745196 RepID=UPI001C3320E5)

HSP 1 Score: 73.2 bits (178), Expect = 1.380e-11
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYG 336
            VA+AL A HA+G  H DVKPGN++ +  G +KL DFG A  +  +  +         G+PA+++PE  SGRG T ++D+W L ATL A V G  P+  DG       ++++G
Sbjct:  152 VAAALEAAHAAGITHRDVKPGNVLISSDGRIKLTDFGIARNVSEATMTRTG---MMLGSPAYIAPEVASGRGVTPSADLWGLGATLFAAVEGAPPYDADGDPLETVGKVVHG 260
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156833 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZKY0_9STRA4.910e-131100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YXT3_9STRA1.410e-1646.49Kinase-like domain-containing protein n=2 Tax=Trib... [more]
A0A836CE44_9STRA1.110e-1449.12Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A1H7UKC0_9ACTN1.240e-1250.00Non-specific serine/threonine protein kinase n=2 T... [more]
A0A365GWQ2_9ACTN1.370e-1244.95Non-specific serine/threonine protein kinase n=1 T... [more]
UPI000859E9D04.040e-1243.48serine/threonine protein kinase n=1 Tax=Isopterico... [more]
UPI001F1C63BF9.270e-1243.59serine/threonine protein kinase n=1 Tax=Nocardioid... [more]
UPI001356E13C1.010e-1142.61serine/threonine protein kinase n=1 Tax=Puerhibact... [more]
UPI00188CF6511.300e-1142.61serine/threonine protein kinase n=1 Tax=Nocardioid... [more]
UPI001C3320E51.380e-1140.18Serine/threonine-protein kinase PknD n=2 Tax=Amyco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:42406..43020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156833|e_gw1.1.339.1
Descriptionserine threonine protein kinase
COG categoryKLT
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG0515@1|root,COG0515@2|Bacteria,2GNFM@201174|Actinobacteria,4E0U7@85010|Pseudonocardiales
Evalue1.47e-12
Seed ortholog1114959.SZMC14600_08098
Hectar predicted targeting categoryother localisation
TranscriptId157155
TrackFilteredModels1
ProteinId156833
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156833gene_909Tribonema minus UTEX_B_3156 geneContig_1 42406..43020 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_909_1exon_909_1Tribonema minus UTEX_B_3156 exonContig_1 42406..43020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_909CDS_909Tribonema minus UTEX_B_3156 CDSContig_1 42406..43020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156833Trimin1|156833|e_gw1.1.339.1Tribonema minus UTEX_B_3156 polypeptideContig_1 42406..43020 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_909 ID=mRNA_909|Name=jgi.p|Trimin1|156833|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=615bp|location=Sequence derived from alignment at Contig_1:42406..43020- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGCCTCCGCCCTGCTGGCCGTCCACGCCTCCGGCTACGCCCACAACGA
CGTCAAGCCGGGCAACCTCATGAGGACGCGGAGCGGGTCGGTCAAGCTGG
GGGACTTCGGGTCCGCGACGCGCCTGCCGGGCTCCCCGGCGTCCTGCGCC
GCGCCGCCGGCCGCCGCCCACGGCACCCCCGCCTTCATGTCCCCCGAGGC
CTGCTCGGGGAGGGGGGGGACGGAGGCCAGCGACGTCTGGTCCCTGACCG
CGACCCTGTCCGCGCTGGTCTTCGGCAGGCTGCCGTTCGCCTGCGACGGG
GGGGAGGGGGCCCTCGCGGAGAGGATCATGTACGGGTCGCCGAGGTATGA
CGACGGCGACGATGACGAGTGGGGGGACCGCGACCACGACGACTGGGGGG
ACCGAGAGGAGAGCCGCGACGGCGCACCCGACCGAGGCGGACGAGGCGGA
GGCCTCCGCGACGCGCACGAGAGGGCCAACCTGCTCCACCTGCTGGGTTG
GGGCCTGTCCAAGCTGCCGGCGGCGCGCCCCTCCCTCGAGCAGTTCCTCG
CGCACCCCTGGGCGGCGGCCGGGCGGGCGCGTAGCGAGACGCCGCGAGCA
GAAATGCAGACGTGA
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protein sequence of jgi.p|Trimin1|156833

>Trimin1|156833|e_gw1.1.339.1 ID=Trimin1|156833|e_gw1.1.339.1|Name=jgi.p|Trimin1|156833|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCA
APPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDG
GEGALAERIMYGSPRYDDGDDDEWGDRDHDDWGDREESRDGAPDRGGRGG
GLRDAHERANLLHLLGWGLSKLPAARPSLEQFLAHPWAAAGRARSETPRA
EMQT*
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mRNA from alignment at Contig_1:42406..43020-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_909 ID=mRNA_909|Name=jgi.p|Trimin1|156833|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=615bp|location=Sequence derived from alignment at Contig_1:42406..43020- (Tribonema minus UTEX_B_3156 )
GTCGCCTCCGCCCTGCTGGCCGTCCACGCCTCCGGCTACGCCCACAACGA
CGTCAAGCCGGGCAACCTCATGAGGACGCGGAGCGGGTCGGTCAAGCTGG
GGGACTTCGGGTCCGCGACGCGCCTGCCGGGCTCCCCGGCGTCCTGCGCC
GCGCCGCCGGCCGCCGCCCACGGCACCCCCGCCTTCATGTCCCCCGAGGC
CTGCTCGGGGAGGGGGGGGACGGAGGCCAGCGACGTCTGGTCCCTGACCG
CGACCCTGTCCGCGCTGGTCTTCGGCAGGCTGCCGTTCGCCTGCGACGGG
GGGGAGGGGGCCCTCGCGGAGAGGATCATGTACGGGTCGCCGAGGTATGA
CGACGGCGACGATGACGAGTGGGGGGACCGCGACCACGACGACTGGGGGG
ACCGAGAGGAGAGCCGCGACGGCGCACCCGACCGAGGCGGACGAGGCGGA
GGCCTCCGCGACGCGCACGAGAGGGCCAACCTGCTCCACCTGCTGGGTTG
GGGCCTGTCCAAGCTGCCGGCGGCGCGCCCCTCCCTCGAGCAGTTCCTCG
CGCACCCCTGGGCGGCGGCCGGGCGGGCGCGTAGCGAGACGCCGCGAGCA
GAAATGCAGACGTGA
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Coding sequence (CDS) from alignment at Contig_1:42406..43020-

>mRNA_909 ID=mRNA_909|Name=jgi.p|Trimin1|156833|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=615bp|location=Sequence derived from alignment at Contig_1:42406..43020- (Tribonema minus UTEX_B_3156 )
GTCGCCTCCGCCCTGCTGGCCGTCCACGCCTCCGGCTACGCCCACAACGA
CGTCAAGCCGGGCAACCTCATGAGGACGCGGAGCGGGTCGGTCAAGCTGG
GGGACTTCGGGTCCGCGACGCGCCTGCCGGGCTCCCCGGCGTCCTGCGCC
GCGCCGCCGGCCGCCGCCCACGGCACCCCCGCCTTCATGTCCCCCGAGGC
CTGCTCGGGGAGGGGGGGGACGGAGGCCAGCGACGTCTGGTCCCTGACCG
CGACCCTGTCCGCGCTGGTCTTCGGCAGGCTGCCGTTCGCCTGCGACGGG
GGGGAGGGGGCCCTCGCGGAGAGGATCATGTACGGGTCGCCGAGGTATGA
CGACGGCGACGATGACGAGTGGGGGGACCGCGACCACGACGACTGGGGGG
ACCGAGAGGAGAGCCGCGACGGCGCACCCGACCGAGGCGGACGAGGCGGA
GGCCTCCGCGACGCGCACGAGAGGGCCAACCTGCTCCACCTGCTGGGTTG
GGGCCTGTCCAAGCTGCCGGCGGCGCGCCCCTCCCTCGAGCAGTTCCTCG
CGCACCCCTGGGCGGCGGCCGGGCGGGCGCGTAGCGAGACGCCGCGAGCA
GAAATGCAGACGTGA
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