mRNA_908 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|156690
Unique Name	mRNA_908
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|156690 vs. uniprot
Match: A0A835ZQ03_9STRA (EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ03_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.870e-20
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:    1 MTKSHSCSKMASFNTAGGGPKYCGAHKLAGMIYVKARNRCGDPDXXXXXXXXXXXXXXXXXXXXXXXXXVNVVASR 228
            MTKSHSCSKMASFNTAGGGPKYCGAHKLAGMIYVKARNRCGDPDXXXXXXXXXXXXXXXXXXXXXXXXXVNVVASR
Sbjct:    1 MTKSHSCSKMASFNTAGGGPKYCGAHKLAGMIYVKARNRCGDPDXXXXXXXXXXXXXXXXXXXXXXXXXVNVVASR 76

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|156690 vs. uniprot

BLAST of jgi.p|Trimin1|156690 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZQ03_9STRA	5.870e-20	100.00	EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=3...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:40460..41557 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|156690\|e_gw1.1.35.1
Hectar predicted targeting category	other localisation
TranscriptId	157012
Track	FilteredModels1
ProteinId	156690

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156690	gene_908	Tribonema minus UTEX_B_3156	gene	Contig_1 40460..41557 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_908_1	exon_908_1	Tribonema minus UTEX_B_3156	exon	Contig_1 40460..41557 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_908	CDS_908	Tribonema minus UTEX_B_3156	CDS	Contig_1 40460..41557 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156690	Trimin1\|156690\|e_gw1.1.35.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_1 40460..41557 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_1:40460..41557+
coding sequence from alignment at Contig_1:40460..41557+

spliced messenger RNA

>mRNA_908 ID=mRNA_908|Name=jgi.p|Trimin1|156690|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1098bp|location=Sequence derived from alignment at Contig_1:40460..41557+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAAGAGTCACTCATGTTCGAAGATGGCGTCGTTTAACACAGCTGG
CGGCGGTCCGAAGTACTGTGGCGCGCACAAGCTGGCGGGCATGATCTACG
TCAAAGCCCGCAATCGTTGCGGCGACCCCGACTGTCTCAAGAAGCCGAGC
TTCGGCATGCGCGGCGGAAAGGCGCGGTACTGCGCGGCTCACAAGCTCGC
CGACATGGTGAACGTCGTGGCCAGCAGGTGCGCCGACCCCGATTGTCTCA
AGCATCCCTGCTTCGGCACGCGCGGCGGGAAGGCGCGGTACTGCGCGGCT
CACAAGCTCGCCGGGATGGTGAACGTGAGGTGCAAGACGTGCGCTGATCC
CGACTGTCGCAAGCGCGCCACCTTCGGCGTCGACGGGGGCGAGTTGGAGT
GGTGCGCGGCGCACAAGCTCGCGGGCATGGTGAACGTCAGGAACGCGAGC
TGCGCCCACCCGGACTGCCGCAAGGAGCCGTCTTTCGGCATGCGCGGCGG
GAGGCCGAAGTACTGCGCGGACCACAAGCTCGAGGGCATGATGAACGTCA
GGAACGCGAACTGCGACCACCCGGGCTGCCGCAAGGTGCCGTCGTTCGCG
CCGGAGGGTGAGAAGGCGCGGTACTGCGCGGCTCACAAGCTCGCCGGGAT
GGTGAACGTGAGGTGCAAGACGTGCGCTGATCCCGACTGTCGCGAGCGCG
CCACCTTCGGCGTTGACGGGGGCGAGCCGGAGTGGTGCGCGGCGCACAAG
CTCGACGCCATGGTGAACGTCAGGAACGCGAGCTGCGCCCACCCCGCGTG
CGGCAAGAGTCCCACCTTCGGGGTCCAGGGGCGCACACCCGAGTTCTGCG
CGGCTCACAGGCTCGAGGGGATGGTGAGCCTCCGCGGCAAGAAGTGCTCC
CGCCCCGGGTGCGGCAAGCACGCTTCCTTCGGCGTCGCCGGAGGGCCCCA
CGAGTACTGCGAGGAGCACAAGCGGGAGGGGATGGTGGACGTCCACAGCA
GGATGTGCGCGCACCCCGGCTGCGGCAAGCACGCCACCTTTGCACTCGAG
GGGAGCAGACCGCAGCGGTGCGGCGACCACAGGCTCGACGGCATGGTG

protein sequence of jgi.p|Trimin1|156690

>Trimin1|156690|e_gw1.1.35.1 ID=Trimin1|156690|e_gw1.1.35.1|Name=jgi.p|Trimin1|156690|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=366bp
MTKSHSCSKMASFNTAGGGPKYCGAHKLAGMIYVKARNRCGDPDCLKKPS
FGMRGGKARYCAAHKLADMVNVVASRCADPDCLKHPCFGTRGGKARYCAA
HKLAGMVNVRCKTCADPDCRKRATFGVDGGELEWCAAHKLAGMVNVRNAS
CAHPDCRKEPSFGMRGGRPKYCADHKLEGMMNVRNANCDHPGCRKVPSFA
PEGEKARYCAAHKLAGMVNVRCKTCADPDCRERATFGVDGGEPEWCAAHK
LDAMVNVRNASCAHPACGKSPTFGVQGRTPEFCAAHRLEGMVSLRGKKCS
RPGCGKHASFGVAGGPHEYCEEHKREGMVDVHSRMCAHPGCGKHATFALE
GSRPQRCGDHRLDGMV

mRNA from alignment at Contig_1:40460..41557+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_908 ID=mRNA_908|Name=jgi.p|Trimin1|156690|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1098bp|location=Sequence derived from alignment at Contig_1:40460..41557+ (Tribonema minus UTEX_B_3156 )
ATGACCAAGAGTCACTCATGTTCGAAGATGGCGTCGTTTAACACAGCTGG
CGGCGGTCCGAAGTACTGTGGCGCGCACAAGCTGGCGGGCATGATCTACG
TCAAAGCCCGCAATCGTTGCGGCGACCCCGACTGTCTCAAGAAGCCGAGC
TTCGGCATGCGCGGCGGAAAGGCGCGGTACTGCGCGGCTCACAAGCTCGC
CGACATGGTGAACGTCGTGGCCAGCAGGTGCGCCGACCCCGATTGTCTCA
AGCATCCCTGCTTCGGCACGCGCGGCGGGAAGGCGCGGTACTGCGCGGCT
CACAAGCTCGCCGGGATGGTGAACGTGAGGTGCAAGACGTGCGCTGATCC
CGACTGTCGCAAGCGCGCCACCTTCGGCGTCGACGGGGGCGAGTTGGAGT
GGTGCGCGGCGCACAAGCTCGCGGGCATGGTGAACGTCAGGAACGCGAGC
TGCGCCCACCCGGACTGCCGCAAGGAGCCGTCTTTCGGCATGCGCGGCGG
GAGGCCGAAGTACTGCGCGGACCACAAGCTCGAGGGCATGATGAACGTCA
GGAACGCGAACTGCGACCACCCGGGCTGCCGCAAGGTGCCGTCGTTCGCG
CCGGAGGGTGAGAAGGCGCGGTACTGCGCGGCTCACAAGCTCGCCGGGAT
GGTGAACGTGAGGTGCAAGACGTGCGCTGATCCCGACTGTCGCGAGCGCG
CCACCTTCGGCGTTGACGGGGGCGAGCCGGAGTGGTGCGCGGCGCACAAG
CTCGACGCCATGGTGAACGTCAGGAACGCGAGCTGCGCCCACCCCGCGTG
CGGCAAGAGTCCCACCTTCGGGGTCCAGGGGCGCACACCCGAGTTCTGCG
CGGCTCACAGGCTCGAGGGGATGGTGAGCCTCCGCGGCAAGAAGTGCTCC
CGCCCCGGGTGCGGCAAGCACGCTTCCTTCGGCGTCGCCGGAGGGCCCCA
CGAGTACTGCGAGGAGCACAAGCGGGAGGGGATGGTGGACGTCCACAGCA
GGATGTGCGCGCACCCCGGCTGCGGCAAGCACGCCACCTTTGCACTCGAG
GGGAGCAGACCGCAGCGGTGCGGCGACCACAGGCTCGACGGCATGGTG

Coding sequence (CDS) from alignment at Contig_1:40460..41557+

>mRNA_908 ID=mRNA_908|Name=jgi.p|Trimin1|156690|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1098bp|location=Sequence derived from alignment at Contig_1:40460..41557+ (Tribonema minus UTEX_B_3156 )
ATGACCAAGAGTCACTCATGTTCGAAGATGGCGTCGTTTAACACAGCTGG
CGGCGGTCCGAAGTACTGTGGCGCGCACAAGCTGGCGGGCATGATCTACG
TCAAAGCCCGCAATCGTTGCGGCGACCCCGACTGTCTCAAGAAGCCGAGC
TTCGGCATGCGCGGCGGAAAGGCGCGGTACTGCGCGGCTCACAAGCTCGC
CGACATGGTGAACGTCGTGGCCAGCAGGTGCGCCGACCCCGATTGTCTCA
AGCATCCCTGCTTCGGCACGCGCGGCGGGAAGGCGCGGTACTGCGCGGCT
CACAAGCTCGCCGGGATGGTGAACGTGAGGTGCAAGACGTGCGCTGATCC
CGACTGTCGCAAGCGCGCCACCTTCGGCGTCGACGGGGGCGAGTTGGAGT
GGTGCGCGGCGCACAAGCTCGCGGGCATGGTGAACGTCAGGAACGCGAGC
TGCGCCCACCCGGACTGCCGCAAGGAGCCGTCTTTCGGCATGCGCGGCGG
GAGGCCGAAGTACTGCGCGGACCACAAGCTCGAGGGCATGATGAACGTCA
GGAACGCGAACTGCGACCACCCGGGCTGCCGCAAGGTGCCGTCGTTCGCG
CCGGAGGGTGAGAAGGCGCGGTACTGCGCGGCTCACAAGCTCGCCGGGAT
GGTGAACGTGAGGTGCAAGACGTGCGCTGATCCCGACTGTCGCGAGCGCG
CCACCTTCGGCGTTGACGGGGGCGAGCCGGAGTGGTGCGCGGCGCACAAG
CTCGACGCCATGGTGAACGTCAGGAACGCGAGCTGCGCCCACCCCGCGTG
CGGCAAGAGTCCCACCTTCGGGGTCCAGGGGCGCACACCCGAGTTCTGCG
CGGCTCACAGGCTCGAGGGGATGGTGAGCCTCCGCGGCAAGAAGTGCTCC
CGCCCCGGGTGCGGCAAGCACGCTTCCTTCGGCGTCGCCGGAGGGCCCCA
CGAGTACTGCGAGGAGCACAAGCGGGAGGGGATGGTGGACGTCCACAGCA
GGATGTGCGCGCACCCCGGCTGCGGCAAGCACGCCACCTTTGCACTCGAG
GGGAGCAGACCGCAGCGGTGCGGCGACCACAGGCTCGACGGCATGGTG