mRNA_9083 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|68089
Unique Name	mRNA_9083
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|68089 vs. uniprot
Match: A0A836CCZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ3_9STRA)

HSP 1 Score: 216 bits (551), Expect = 2.710e-68
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 3

Query:  180 MEQRLRQPGANEDADTKAAIEASLQTASAHSASLSGATHNTAPCTMGQQLQQPWQQXXXXXXXXXARGRSSEQHAAPQQGRPQAAMQSSLSPIPPPVATMSNNTPCQPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAGRGSAPPRGHGGKGKGGGRR 662
            MEQRLRQPGANEDADTKAAIEASLQTASAHSASLSGATHNTAPCTMGQQLQQPWQQXXXXXXXXXARGRSSEQHAAPQQGRPQAAMQSSLSPIPPPVATMSNNTPCQPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAGRGSAPPRGHGGKGKGGGRR
Sbjct:    1 MEQRLRQPGANEDADTKAAIEASLQTASAHSASLSGATHNTAPCTMGQQLQQPWQQXXXXXXXXXARGRSSEQHAAPQQGRPQAAMQSSLSPIPPPVATMSNNTPCQPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAGRGSAPPRGHGGKGKGGGRR 161

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|68089 vs. uniprot

BLAST of jgi.p|Trimin1|68089 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CCZ3_9STRA	2.710e-68	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_44	contig	Contig_44:410748..413730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|68089\|CE68088_86
Hectar predicted targeting category	other localisation
TranscriptId	68411
Track	FilteredModels1
ProteinId	68089

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|68089	gene_9083	Tribonema minus UTEX_B_3156	gene	Contig_44 410748..413730 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|68089	Trimin1\|68089\|CE68088_86	Tribonema minus UTEX_B_3156	polypeptide	Contig_44 411635..413654 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9083_1	exon_9083_1	Tribonema minus UTEX_B_3156	exon	Contig_44 410748..410920 +
exon_9083_2	exon_9083_2	Tribonema minus UTEX_B_3156	exon	Contig_44 411629..411670 +
exon_9083_3	exon_9083_3	Tribonema minus UTEX_B_3156	exon	Contig_44 412447..412488 +
exon_9083_4	exon_9083_4	Tribonema minus UTEX_B_3156	exon	Contig_44 413247..413730 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_9083	UTR5_9083	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_44 410748..410920 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9083	CDS_9083	Tribonema minus UTEX_B_3156	CDS	Contig_44 411635..411670 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_9083	UTR3_9083	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_44 413655..413730 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_44:410748..413730+
coding sequence from alignment at Contig_44:410748..413730+

spliced messenger RNA

>mRNA_9083 ID=mRNA_9083|Name=jgi.p|Trimin1|68089|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=741bp|location=Sequence derived from alignment at Contig_44:410748..413730+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCCAGGCCGACATGCAGCCCAATGTGCAGTCTCGCGAGGGCTGCGAGGA
CATTGAGCCCATTCGGCTTGGGTACCAGCTCATGCATGCCAAGATCTGGG
GCATGAGGTGGGCCACTACCTCAGCGCGCGTGTGCGCGGGGGGGTGTACC
CCCTGGAGTGCCGCAACTCACAGGTGCTGATGGAACAGCGTCTGCGGCAG
CCTGGGGCCAATGAGGACGCAGACACCAAGGCTGCCATCGAGGCATCGCT
GCAAACGGCGTCAGCTCACTCTGCGTCGTTGAGCGGTGCTACCCACAACA
CGGCGCCATGCACCATGGGCCAGCAGCTGCAGCAGCCATGGCAGCAGCAG
CAGCAGCAGCAGCCCAGTACTCAGGCACGCGGACGCAGCAGCGAGCAGCA
CGCGGCGCCTCAGCAGGGCCGCCCGCAGGCTGCCATGCAGAGCAGCTTAT
CCCCCATACCACCTCCGGTGGCAACAATGTCCAACAACACCCCTTGCCAA
CCGAGGCGCGGCTCGTACGCGGCAGCGGCGGCTGCGGCGGTGGCGGCGTC
TCAGGCGCAGCAGCAGCGGGGGCAGCAGCAGCAGCAGCAGGGAGGTCTGG
CCGGTCGCGGCAGTGCTCCTCCAAGGGGACATGGTGGCAAGGGGAAGGGG
GGAGGGAGACGCTGAGCCCTGCCACCGCTGCCCGTCTGGGGGTTATGGGG
GTACTGAAGCAACATCATACAACGCGCAGGGTTGCGGTTAT

protein sequence of jgi.p|Trimin1|68089

>Trimin1|68089|CE68088_86 ID=Trimin1|68089|CE68088_86|Name=jgi.p|Trimin1|68089|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=162bp
MEQRLRQPGANEDADTKAAIEASLQTASAHSASLSGATHNTAPCTMGQQL
QQPWQQQQQQQPSTQARGRSSEQHAAPQQGRPQAAMQSSLSPIPPPVATM
SNNTPCQPRRGSYAAAAAAAVAASQAQQQRGQQQQQQGGLAGRGSAPPRG
HGGKGKGGGRR*

mRNA from alignment at Contig_44:410748..413730+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9083 ID=mRNA_9083|Name=jgi.p|Trimin1|68089|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2983bp|location=Sequence derived from alignment at Contig_44:410748..413730+ (Tribonema minus UTEX_B_3156 )
AGCCAGGCCGACATGCAGCCCAATGTGCAGTCTCGCGAGGGCTGCGAGGA
CATTGAGCCCATTCGGCTTGGGTACCAGCTCATGCATGCCAAGATCTGGG
GCATGAGGTGGGCCACTACCTCAGCGCGCGTGTGCGCGGGGGGGTGTACC
CCCTGGAGTGCCGCAACTCACAGGCAAGTGAACTTCCGTTGACATGCAAT
CAAGTTGCAATGAGAGCGTGCATGACGGCGGTGATTTGGAGGCACGGGTT
AGGGCACGGGTTACTAGTCAGGGTGAGGTTTGCCTGATGCTAGCCCTTCA
CAGCAGCAATTGCCACCGTGTGTGGTGGTAGAGCACGTGCTTCAGAACGG
TGCTTTGGTGCCGCGCTACCACCGCTCTGTGCGCGTCGATACGTGCGACT
GAACCCTAACCCTAAGCCCTCATTCTAATTGCTGACCCCTGGCCCCACCC
CCCAGTAGAAATGACATGCGCTGGAGAGTTCTGCGCCAGGGCGTCATAGC
GCACAACGGTTTGAAGTGGCGCAGAGCAAGTATGGTGTACTTCGAAGTAC
ATGCACATTGCCCCATTGTGACCACGTACGCGCCTTGCCATGGCATTTTG
CAGCGGTTTGGGTTAGGGTTATGCTAATGTCATTATCAATCAGGGTTAGG
TGTGTACTGCATGCATGAGTCAGAGACGTCATCATGGTGACACTGTGTTA
CAGACACTGGCACAAGGTCTGCAGATCCCGTGCAGCTAGCCATGTCGGTA
GCACAACTCAGGAGTCACAGTGCTCGCCCGCTGACGTCACTGGGCATACA
TGTTCTCTTTGCCTCAATGACACACTTTTCATGTGCCTGACGCATCATGC
GCCGGTGTTCATGTTCTCACCGCATGTGCAGGTGCTGATGGAACAGCGTC
TGCGGCAGCCTGGGGCCAATGAGGTGAGCAAGCGGCACGTCACACTTGCA
CATCAGCAGCAAATTCAAGTTGCAAACCGTAGCTAGACAGGAATAACGCG
TCAGTGCTTAGAAGTGCAGACCATAAATCTGAATGCAGTTTATTGCCACG
ACCCTAGACGACATATGTGCAGCAATACTGCGTCATTACTTGTGACTGGC
ACGGTTGACTGAGCACTGCTGCCACAGCAATTACATGACGCAACCGAGAG
GATGCGCCATTCATGCGTACACGCGCCACGTGTGGTTTGTACAAGTCGCA
TGCAATAATCAATACTGCGCGGTAGCACAACTACAACGAGTAAGGCTGCA
TTGTCCCCCGTTAATGTCATACATACAATGCTGTGCGCATGCAACTTCTG
ACAACAACGCCTCAGTGACTTTGTAGGCACAAGTGGGTCGCGGAAGGTGG
TATTGTGAGATACACCTCAGAGCATTTCTGTCATCGCAGACCCATGACGC
ATCTACTGGCCCCACTTTTTATTCAAGCACTTGATGAGCGTGCGTTCAGA
TGATAGACCGGGCTGAATGGGAAGCCATGACTTGAAGACATCTGCGTTGT
TGCATCTGCACCTGATACATAGCACATTCGGTGCGTAGGCTAGTGACAGT
GACAATCACGTCACCTGCAACGCGTGCGTATAATTCAACACTGGCGTGCC
TGACATGACTTATCAAATGCGCCATCGCCGCTGACTGATCACCTCTGTAA
CTCTAACCCTAGCACCAACTCTGACCCTAACTCTCTCCCTGTCTAGCAGG
ACGCAGACACCAAGGCTGCCATCGAGGCATCGCTGCAAACGGTACGTGAA
CCTATACTAGCCAGTGTGTGGTGCACTGGGCTGGTGACGAGTATGTACTA
GAGCTGGCCATTCAACTGGCGTCATTGATGACTGTTGCTTTAGCTGGTGT
GTGCCTTGTCCCCACCACCATTTGCGTGCCTGTAAGCTCAAGACTGCATG
TGAATGAAAAGGAATTAAGTAAAATATCGTAGTGCATAAACTGGTTCAAA
TAGCAAAACTGGATGTGTGCACTGACATGTAGGCAATGGTAGCAGAAGGA
CATGTCTCGCCATTGATTGACTGTGGTCCTCAGGACGCATGAGCGTCTGC
TAACTTGATGCTGACTCTGAGGATTTAGAGGGATAGAGGGATGATGACAA
AAATTGTTTTTACAAGAAATGATGCTTGCTTTGTGCGCACCACATGACGT
GCACAGTATGCGGCATGAGCAGAGTGTCCAGTGCATGCACAAAAACTAGC
TGAGTCATCTCGGCACTTCAATCTCTGTGCGCCCGCAGCTGTGCTCAGTC
TGCAGGGCCCATGCCTGCTGCAGCGTCAAGCTACTTTACTTGAAGTAGGT
CACACCCGCCCCCCCTAACCCTAACCTCATCTACGCCACACTCAAGCACT
GCAAATGGCCTGAGTCATTCCACGAGTCCCAACTAACACGCTCCCGGCTG
TTTGGGCACCTCCCCACTACTAGCCACCACCAGACCCTAGAAGAAGACAA
CTTCACTTGATTGATTCCTGCTCACCTGGTCACTGCTGGCTCATTACAGG
CGTCAGCTCACTCTGCGTCGTTGAGCGGTGCTACCCACAACACGGCGCCA
TGCACCATGGGCCAGCAGCTGCAGCAGCCATGGCAGCAGCAGCAGCAGCA
GCAGCCCAGTACTCAGGCACGCGGACGCAGCAGCGAGCAGCACGCGGCGC
CTCAGCAGGGCCGCCCGCAGGCTGCCATGCAGAGCAGCTTATCCCCCATA
CCACCTCCGGTGGCAACAATGTCCAACAACACCCCTTGCCAACCGAGGCG
CGGCTCGTACGCGGCAGCGGCGGCTGCGGCGGTGGCGGCGTCTCAGGCGC
AGCAGCAGCGGGGGCAGCAGCAGCAGCAGCAGGGAGGTCTGGCCGGTCGC
GGCAGTGCTCCTCCAAGGGGACATGGTGGCAAGGGGAAGGGGGGAGGGAG
ACGCTGAGCCCTGCCACCGCTGCCCGTCTGGGGGTTATGGGGGTACTGAA
GCAACATCATACAACGCGCAGGGTTGCGGTTAT

Coding sequence (CDS) from alignment at Contig_44:410748..413730+

>mRNA_9083 ID=mRNA_9083|Name=jgi.p|Trimin1|68089|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=486bp|location=Sequence derived from alignment at Contig_44:410748..413730+ (Tribonema minus UTEX_B_3156 )
ATGGAACAGCGTCTGCGGCAGCCTGGGGCCAATGAGGACGCAGACACCAA
GGCTGCCATCGAGGCATCGCTGCAAACGGCGTCAGCTCACTCTGCGTCGT
TGAGCGGTGCTACCCACAACACGGCGCCATGCACCATGGGCCAGCAGCTG
CAGCAGCCATGGCAGCAGCAGCAGCAGCAGCAGCCCAGTACTCAGGCACG
CGGACGCAGCAGCGAGCAGCACGCGGCGCCTCAGCAGGGCCGCCCGCAGG
CTGCCATGCAGAGCAGCTTATCCCCCATACCACCTCCGGTGGCAACAATG
TCCAACAACACCCCTTGCCAACCGAGGCGCGGCTCGTACGCGGCAGCGGC
GGCTGCGGCGGTGGCGGCGTCTCAGGCGCAGCAGCAGCGGGGGCAGCAGC
AGCAGCAGCAGGGAGGTCTGGCCGGTCGCGGCAGTGCTCCTCCAAGGGGA
CATGGTGGCAAGGGGAAGGGGGGAGGGAGACGCTGA