mRNA_9055 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348648
Unique NamemRNA_9055
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A835YZF0_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF0_9STRA)

HSP 1 Score: 565 bits (1456), Expect = 4.150e-203
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1
Query:    1 MSLSEDQHAMIQSTLRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDFMQTLPACVHLNHVTEQTEA 831
            MSLSEDQHAMIQSTLRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDFMQTLPACVHLNHVTEQTEA
Sbjct:    1 MSLSEDQHAMIQSTLRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDFMQTLPACVHLNHVTEQTEA 277          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: UPI0010A415CC (phosphatidylinositol transfer protein 3-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A415CC)

HSP 1 Score: 82.8 bits (203), Expect = 2.530e-14
Identity = 63/223 (28.25%), Postives = 108/223 (48.43%), Query Frame = 1
Query:  106 DEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDF 774
            DE++  R+L A  W      K  ++ ++ TL+WR   K  ++  E + + A      TG IY   +       +++ R +R + +E+ +  I+Y+VY +E A+L +P EQ  +  + + F    G +     +   RE  +VL  HYP RL    + NP   F   +++V+PLLE  T NK+ FV      N+K+      +    D+  LE  +GG+   +F
Sbjct:   49 DESIS-RHLRARNWNV----KKATKMLKQTLKWRAAYKPEEIRWEEIANEAE-----TGKIYRSNYTDKNGRTVLVMRPSR-QNSESIKGQIKYLVYCMENAILNLPAEQEQMV-WLIDFQ---GFSLSNISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFFKMVKPLLEPKTYNKVKFVYSDDH-NTKK-----IMEDLFDMDRLESSFGGNNNSEF 250          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A0L0DPN5_THETB (Random slug protein 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPN5_THETB)

HSP 1 Score: 83.2 bits (204), Expect = 3.100e-14
Identity = 66/240 (27.50%), Postives = 111/240 (46.25%), Query Frame = 1
Query:   64 PVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFI---EYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDF 774
            PVDL +   ++F  D   C RYL A G+     ++  ++ +  TL WR   K  ++  E +    L+     G +Y+         P+V  +     G + T D I   +Y+VY LE+AL  +        ++ + F      AG M  +   ++  +VL  HYP RL ++++ N    F + W  VRP ++ NT  K+ F+    +P          +A+ I+ S LEVDYGG   +++
Sbjct:  178 PVDLSDAKVLAFATDATYC-RYLRARGYS----AEKAAKMLVGTLVWRAEYKPEEITLEEVWEE-LENE---GKMYLSAHKDREGRPVVYMK----PGHDNTTDRIVKVKYLVYVLEKALGSITTPGIETMTWVIDFKGYKQLAG-MKNIRVSKDTASVLQNHYPERLGKVFMCNQPWVFNIFWGAVRPFIDKNTVAKVSFLGSDYAP----------IAEVIEPSELEVDYGGKVVYNY 393          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A7S4M7N4_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M7N4_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 3.270e-14
Identity = 57/223 (25.56%), Postives = 106/223 (47.53%), Query Frame = 1
Query:  124 RYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFI---EYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVR---EAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDF 774
            RYL A  W      +     ++ TL+WR+  +   +  E +   A      TG +Y+  +      P+V+ R     G +TT+D +   +Y+V+ +E A+  +  E+  +    +L +  TG    +  +   +   E +N+L  HYP RL +  +V+P   F+  W+V++PLL+  T+ K+VFV+     + K+      +   I    LE D+GG  ++ +
Sbjct:   41 RYLRARQWNV----EQAWTMLQGTLQWRKEYQPEAITIEEIEEEA-----ATGKMYISPYQDKSQRPIVVMR----PGLDTTKDRVAKVKYLVWIVENAIKTMKPEENGVEKITLLIDF-TGVGMSLAGVDNTKVSLEVLNILQNHYPERLGKALMVSPPWIFSAFWKVIKPLLDPVTQEKLVFVK-----DKKKDA--AVVKDCIAEENLEQDFGGTSSWSY 242          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A7S2WCV0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCV0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.340e-14
Identity = 60/210 (28.57%), Postives = 99/210 (47.14%), Query Frame = 1
Query:   34 QSTLRQLQE----VPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKI 651
            QSTL+ L+E    VP    + +    P       RYL+   W     S  +++ +  T++WR +  V      T   P   +    G IYV+G D  G  P++++      G       ++ +VYNLERA+     E  A+      F  D    G +P L +V+ A  ++ RHYP R+ R+++V+ GTAF   W+ + P++   TR ++
Sbjct:  265 QSTLKALREELETVPGMSAKASSSGLPLTNENLARYLEMTDWHLHSGSASVADMVAHTVQWRLDHGVG-----TQPRPEFPSLAEGGVIYVNGHDREG-RPVLIYTPTTDTGGPVQAG-LDLLVYNLERAIA----EAEAVGLLQYAFIVDLAKIGPVPPLKSVKAAFEIMGRHYPGRVSRIFLVHGGTAFYWLWKFLEPVIPQRTRARV 463          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A137P5W3_CONC2 (CRAL/TRIO domain-containing protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P5W3_CONC2)

HSP 1 Score: 80.5 bits (197), Expect = 9.910e-14
Identity = 59/225 (26.22%), Postives = 105/225 (46.67%), Query Frame = 1
Query:  106 DEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDFMQ 780
            D+    RYL A  W      K +      TL+WRR  +  K+  ++++     T   TG ++++GFD   +HP++     + + T  +E  ++++V+NLE A+  +P     +  F +L +     A  +  +   +   +VL  HY  R+  +++      F+  +RVV PLL+  T+ KI FV                L+  IDL  +  D+GGD  F F++
Sbjct:   61 DDPCLKRYLRATKWNLEHSVKRLEA----TLKWRREFQPHKITLDSMM-----TEGATGKLHINGFDMQ-NHPILHLVPCK-ENTNDSEGHLKHVVFNLESAIKLLPV---GVEKFVILVDLRNISARNIVSIGDAKAVNDVLSSHYVERVKSIFLCEAPWIFSGFFRVVSPLLDPVTKEKINFVNIKHIKQETVPSGYAKLSNYIDLKYIYKDFGGDNPFTFVK 271          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A6D2K3U3_9BRAS (CRAL-TRIO domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K3U3_9BRAS)

HSP 1 Score: 80.5 bits (197), Expect = 1.290e-13
Identity = 67/226 (29.65%), Postives = 102/226 (45.13%), Query Frame = 1
Query:  109 EALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIY-VDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGG---DRTFDF 774
            +A   RYL A        +K + E    TL+WR   K  ++  E +   A      TG IY  +  D  G   LVM   ++   T++ +  I ++VY +E A+L +P++Q  +         +         +   RE  +VL  HYP RL    + NP   F   +R+V+P L+A TRNK+ FV       S  +  +  L    DL  L+V +GG   D +FDF
Sbjct:   46 DATITRYLAARNGHVNKATKMLKE----TLKWRMQYKPEEIRWEEIAREAE-----TGKIYRANCTDKHGRTVLVMKPSSQ--NTKSPKGQIRFLVYCMENAILNLPEDQEQMVWLIDFHGFNMSHIS----VKVSRETAHVLQEHYPERLGCAILYNPPKVFEPFYRMVKPFLDAKTRNKVRFV------YSDDEISKKVLEDIFDLEQLDVAFGGRNSDSSFDF 250          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A1J7H719_LUPAN (CRAL-TRIO domain-containing protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7H719_LUPAN)

HSP 1 Score: 79.0 bits (193), Expect = 2.790e-13
Identity = 51/188 (27.13%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  196 LEWRRNLKVPKLAAETLLSPA-LQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGG 756
            ++WR +  VP       +SP+ +   L  G ++V G D +     V+F    F+  ++ + F  ++VY L++   R+P  Q    +   +      ++     ++   +A+ +L  ++P RL +L++V+    F   W+V+ PL++ NTR K+VFV        + + L+ TL Q ID S L   YGG
Sbjct:   93 MKWRHSF-VPN----GFISPSEISDELSQGKMFVQGLDKNNRPITVVFAAKHFQNKDSPDTFKGFVVYALDKLCSRMPPGQEKFLAIADIKGWGYANSD----ISGYLKALTILQEYHPERLGKLFIVHAPYMFMKVWKVIYPLIDNNTRKKMVFV--------ENKNLKETLVQDIDESQLPEIYGG 263          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A2Z7CKJ7_9LAMI (Sec14 cytosolic factor-like n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CKJ7_9LAMI)

HSP 1 Score: 76.3 bits (186), Expect = 3.740e-12
Identity = 65/239 (27.20%), Postives = 115/239 (48.12%), Query Frame = 1
Query:   43 LRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPA-LQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGG 756
            L+  +  P+ + ++A +    D+ +  R+L A   R+    K  + +++  L+W+++  VP       +SP  +  NL    +++ G+D +G  P+V+   AR K T   E F  Y+V+ LE+   R+P       +   L      ++     LAA+     +L   YP RL +L++V+    F   W++V PL++ NTR KI+FV            L++TL   ID + L   +GG
Sbjct:   88 LKMARSNPISVVQRADI----DDLMLRRFLRA---RDLNVEKATAMFVK-YLKWKKDF-VPN----GCISPTEIAENLDHDKLFMQGYDKTG-RPIVVVFAARHKPTNVDE-FKRYVVFTLEKICARMPIGHEKFTAIADLQGWGYVNSDVRGYLAAL----TILQDCYPERLGKLFIVHVPYIFMTAWKMVYPLIDKNTRKKIIFVEDKN--------LQSTLLHDIDETQLPDTFGG 299          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A453GDY3_AEGTS (CRAL-TRIO domain-containing protein n=14 Tax=Triticinae TaxID=1648030 RepID=A0A453GDY3_AEGTS)

HSP 1 Score: 72.8 bits (177), Expect = 3.860e-11
Identity = 60/224 (26.79%), Postives = 95/224 (42.41%), Query Frame = 1
Query:  106 DEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVL-------FNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGG 756
            D     R+L A G      S  + +++     WRR   VP      +L+  ++T L     Y+ G D +G   ++ F    F  T     F  Y+VY  +    R+P+ Q      CV+        NCD         + A   A+ +L  +YP RL +  +++    F   W+VV+P ++ANTR+K VFV          + L  TL + ++   L   YGG
Sbjct:   64 DNLTLRRFLRARGHAVGKASAMLLKFVA----WRREA-VP---GGVMLAELVRTELSHEMAYMAGADRAGRPVMLAFPAKHFSATRDMAGFKRYVVYLFDAMCARIPRGQEKF--LCVVDLKGWGYANCD---------VRAYIAAIEILQSYYPERLGKALMIHVPYLFMKAWKVVQPFIDANTRDKFVFV--------DDKSLEETLRREMEDGQLPEMYGG 260          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A835Z365_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z365_9STRA)

HSP 1 Score: 645 bits (1664), Expect = 4.850e-231
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 1
Query:    1 MTLPEQVSGEEFDAFKDRLSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVKPASLLPLLRPLEQQLHRLPPLLLLQQPFMLLALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRPLVDVQLRHVAAWASTDDENWAQRRRVVV 1134
            MTLPEQVSGEEFDAFKDRLSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVKPASLLPLLRPLEQQLHRLPPLLLLQQPFMLLALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRPLVDVQLRHVAAWASTDDENWAQRRRVVV
Sbjct:    1 MTLPEQVSGEEFDAFKDRLSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVKPASLLPLLRPLEQQLHRLPPLLLLQQPFMLLALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRPLVDVQLRHVAAWASTDDENWAQRRRVVV 378          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: D7FNG8_ECTSI (Enoyl-CoA hydratase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG8_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.390e-68
Identity = 132/226 (58.41%), Postives = 156/226 (69.03%), Query Frame = 1
Query:  163 MMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVL--AERAAFISVWGGDHNRSVLEKGVKP 834
            MMV+L+DAV  +E+W RGVAL++   G   FCAGADL+LAR HL T  DGR MCALM+DTL RLR LPL+SVAA+ G A+GGGAEL+T+CD+RV    ++IRFVQVKMGVSTGWGG ARL  +VG R ALRLLAW   L+A  A  LGLVD V EE   A  +A  FL  + TQ    AVRAVK  VAAA  +P  + L  AE   F ++WGG HNR  LE    P
Sbjct:    1 MMVQLSDAVDELEQWDRGVALVVHGMGGN-FCAGADLSLAREHLRTGADGRSMCALMSDTLTRLRRLPLISVAAIDGAAIGGGAELATSCDFRVAGPESNIRFVQVKMGVSTGWGGGARLVGLVGRRAALRLLAWSPPLAADEAAALGLVDAVAEEEGGALAAAREFLGGVLTQDAHEAVRAVKRVVAAAD-VPVSDRLHRAEADEFSALWGGAHNRMALEPPSSP 224          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A7S4B265_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B265_CHRCT)

HSP 1 Score: 216 bits (551), Expect = 9.660e-64
Identity = 135/279 (48.39%), Postives = 173/279 (62.01%), Query Frame = 1
Query:   10 PEQVSGEEFDAFKDRL-SVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGED-AETSANTFLEPLTTQPNWRA-VRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVKPA 837
            P  +S     AFK  L S+  +G V    D A+G+A + LRN   RNAL G MM++LADAV  +E W +GVAL++T  G RAFCAGADL LA+  + TP  G+LM  LM++TL R+  LP++SV AV G A GGGAEL+TA D+RV +S A  RFVQ +M VSTGWGGA RLT IVG RQALRL      + A AA   GL D V  EG + A+ +   F+ P       RA +R++KAAVAA S++      AE  AF SVW    N   ++K ++ A
Sbjct:   19 PRALSRRCMQAFKASLRSLPSSGRVQLQTDQATGVAVLTLRNEARRNALCGTMMIQLADAVHELESWKQGVALVVTGAG-RAFCAGADLHLAQKVINTPEQGQLMSELMSETLDRIAQLPMISVCAVNGAAFGGGAELTTATDWRVFASGATARFVQTQMAVSTGWGGAGRLTGIVGRRQALRLFLHSPLIDAEAALASGLADAVAPEGVNPADAAMELFVTPALRAAGSRAAIRSIKAAVAAHSSVSAGARRAETQAFASVWASADNLRAVQKALERA 296          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: UPI0009E4858E (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4858E)

HSP 1 Score: 207 bits (527), Expect = 4.130e-60
Identity = 123/265 (46.42%), Postives = 171/265 (64.53%), Query Frame = 1
Query:   46 KDRLSVLGAGHVHYTM--DDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVL-AERAAFISVWGGDHNRSVLEKGVK 831
            + +  VLG+G V       +  G A I L NP+ +NAL+G MMV LA+AV  +E+W  G ALIL    + +FC+GADL++ +  + TP +G LMCA M  TL RL +LPL+SVAAV+G A+GGGAEL+TACD+R+MS  A IRFVQVKMG++ GWGG ARL +++G ++AL+LL  GE++  S   QLGLVD     G+D  TS   +L     + +   VRA+K  V+A      ++ L  ER+ F ++WGG+ N+  LE   K
Sbjct:   42 RQKFKVLGSGDVTLIKLTGEQEGTAVISLLNPERKNALTGYMMVRLAEAVDELEQWEHGTALILHGS-EGSFCSGADLSIVKT-INTPREGNLMCAFMQRTLSRLESLPLISVAAVEGRALGGGAELTTACDFRLMSKDAEIRFVQVKMGLTPGWGGGARLVKLLGKQKALQLLGKGEKVDLSYGHQLGLVDGELPLGQDVVTSCCDWLSEFL-KADTSVVRAIKDVVSAGHDSTLKDALDIERSIFTTLWGGEANKQALENAKK 303          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A7S3F357_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F357_9EUKA)

HSP 1 Score: 205 bits (522), Expect = 1.030e-59
Identity = 130/262 (49.62%), Postives = 170/262 (64.89%), Query Frame = 1
Query:   43 FKDRLSVLG-AGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNH-LTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFL-EP-LTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVL 816
            F  RLS L   G V  T+   S +A + L NP+ RNA+SG MM  LADAV  +E W+ GVA+ILT EG   FC+G D  LAR   +++P    LM  LMTDTLHRLR LPL+SVAA+ G A+GGGAEL+TA D+RVM+S A +RFV  +MG +TGWGG ARL  ++G  +AL+LLA G  L  +AA  LGL D V + GE A ++A   L +P +    + +++RA+K+A A+AS IP E    E  A   VWG + NR+ L
Sbjct:   14 FVQRLSALPHPGRV--TLKKESSVAILTLSNPERRNAMSGPMMAGLADAVKELEMWNEGVAVILTGEGG-TFCSGLDYELARGGTVSSPQQATLMSQLMTDTLHRLRQLPLLSVAAIDGFAIGGGAELTTATDWRVMASDAQVRFVHARMGATTGWGGGARLVGMLGRARALKLLAHGTPLDGNAAFALGLCDGVAQAGETAASAAARLLIDPAIAHSASVQSLRAIKSAFASASDIPPEVRAEETQAIGRVWGSEANRNAL 272          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: UPI00145572EB (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145572EB)

HSP 1 Score: 201 bits (510), Expect = 2.630e-57
Identity = 119/276 (43.12%), Postives = 177/276 (64.13%), Query Frame = 1
Query:   13 EQVSGEEFDAFKDRLSV--LGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGD-RAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLA-ERAAFISVWGGDHNRSVLEKGV 828
            E V  E F+   +RL++  L  G+++   D  SG+A I + NP S NA++G MMVEL+D VA +E+WH+G ALIL  + + + FCAGADL  A+  L+ P  G +MC  M + L RL+ LPL+S AAV G A+GGGAE++TACD+R+M+ ++ I+F+  KMG+S GWGG  RL  ++G ++ALRL+A  E ++A  A +L LVD V   G D    A T+L+   ++P    V+++K  V AAS +P++  L+ E+  F  +W G  N + L K +
Sbjct:   53 EFVPIEVFNEQVERLNLKELNGGNLYLEKDQESGIATITISNPSSANAITGSMMVELSDMVAELEKWHKGKALILYGDPEGKHFCAGADLKTAQA-LSNPQAGVMMCLYMQNILSRLQRLPLISAAAVSGNAIGGGAEITTACDFRLMTPSSKIQFIHTKMGLSPGWGGGTRLVNLIGPQKALRLMAGAEVVNAEEAVRLNLVDDVIPGG-DILKQATTWLDKYISEP-VEVVQSIKTVVTAASQLPQDQALSKEKDVFGGLWRGPANNAALAKSL 325          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A8K0ENQ4_BRALA (ECHS1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0ENQ4_BRALA)

HSP 1 Score: 196 bits (497), Expect = 1.150e-55
Identity = 116/260 (44.62%), Postives = 157/260 (60.38%), Query Frame = 1
Query:   55 LSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAA-FISVWGGDHNRSVLEKGVK 831
            LS  G G V  T DDASGLA + L NP+  NA++G MM++L D V  ++ W  G ALI+  +G R+FC GADL +  N L +   GR MC+ M  TL  L  LPL+SVAA+ GPA+GGGAEL TA D+RVM+  A I+FVQ  +G+  GWGG  RLTR+VG  +AL LL+ G  +    A ++GL   +   G D   +   +L+  T +     VRAVK  V A + +P E  LA+ A  F++VWGG  +   + K +K
Sbjct:   46 LSAAGGGAVDLTKDDASGLAVLTLNNPERLNAVTGHMMLQLGDIVNDLKEWKNGKALIVRGKG-RSFCPGADLNMVYNMLDSK-QGREMCSFMHRTLTELHRLPLISVAAIDGPAIGGGAELCTATDFRVMTERADIKFVQALLGIVPGWGGGTRLTRLVGRTRALDLLSSGRTIRPEEAVEIGLASWIIPTGRDVVEATTEWLQRYT-RGRTEVVRAVKNVVVAGTELPVEEALAKEAEQFVNVWGGPAHVEAILKSMK 302          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A6P4ZPQ6_BRABE (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZPQ6_BRABE)

HSP 1 Score: 195 bits (495), Expect = 2.270e-55
Identity = 116/260 (44.62%), Postives = 157/260 (60.38%), Query Frame = 1
Query:   55 LSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAA-FISVWGGDHNRSVLEKGVK 831
            LS  G G V  T DD SGLA + L NP+  NA++G MM++LAD V  ++ W  G ALI+  +G   FC GADL + RN L +   GR MCA M  TL  L  LPL+SV A+ GPA+GGGAEL TA D+RVM+  AHIRFVQ  +G+  GWGG  RLTR+VG  +AL LL+ G  +S   A ++GL + +   G D   +   +++  T +     VRAVK  V A + +  E  LAE A  F++VWGG  ++  + +  +
Sbjct:   46 LSSFGGGAVDLTKDDVSGLAVLTLNNPERLNAVTGNMMLQLADIVNDLKEWKGGKALIVHGKGH-TFCTGADLNMVRNMLDSK-HGREMCAFMHKTLTELHRLPLISVTAIDGPAIGGGAELCTATDFRVMTEQAHIRFVQALLGIVPGWGGGTRLTRLVGRTRALDLLSSGRAISPEEAVEMGLANWMIPTGHDVVEATTDWVQKYT-KGKPEVVRAVKNVVVAGAEMSLEESLAEEAEQFVNVWGGPAHQEAMLRNAR 302          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: UPI00188586EE (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI00188586EE)

HSP 1 Score: 194 bits (493), Expect = 3.370e-55
Identity = 118/263 (44.87%), Postives = 159/263 (60.46%), Query Frame = 1
Query:   46 KDRLSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVD-LVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVK 831
            K +LS  G G V  ++DD +G+A + L NPD +NALSGRMM +L +AVAA+ERW  G  L+L A GD AFC+G DL+  R  ++ P DG  M A M D L RL ALPLVSV  + G A+GGGAEL+ A D+R+ ++ A ++FVQ +MG+ TGWGG ARL  ++G R AL LL     ++A  A +LGL D LV     D    A  +L P     +   VR+VK  +  +     E    ER  F  +WGG+ N+  L+K +K
Sbjct:   35 KQQLSQYGGGSVDLSLDDVTGMASLRLNNPDRKNALSGRMMAQLEEAVAALERWPAGRGLLLHAAGD-AFCSGGDLSTVRA-ISRPVDGMRMSAFMQDALARLAALPLVSVVVLAGRALGGGAELALAADFRLWTAGARLQFVQARMGLLTGWGGGARLAAMLGPRVALDLLTSCRPVAADEALRLGLADALVAPPDGDPLQFARDWLAPRVAH-DVAVVRSVKRMIVNSRGDMSELWRKERELFAPLWGGEANKKALDKNIK 294          
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Match: A0A8B7YI19_ACAPL (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YI19_ACAPL)

HSP 1 Score: 195 bits (496), Expect = 3.530e-55
Identity = 119/276 (43.12%), Postives = 177/276 (64.13%), Query Frame = 1
Query:   13 EQVSGEEFDAFKDRLSV--LGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGD-RAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLA-ERAAFISVWGGDHNRSVLEKGV 828
            E V  E F+   +RL++  L  G +  + +D +GLA I + N  + NA+SG MMV+L+D VA +E+W RG A+IL  + + + FC+GADL      L++P  G +MC  M + L RL+ LPL+SVAAV G AVGGGAE+ TACD+R++S ++ I+F+  KMG+S GWGG  RL R+VG ++AL+LLA GE + A+ +  LGL D + + G+D    A+ +L+  T+QP    VRA+K  V AAS +P +  L+ E+  F  +W G  N+  L + +
Sbjct:   55 EFVPSEVFNERVERLNLKELNGGSLRLSKNDVTGLATITISNVTNANAMSGSMMVDLSDIVADLEKWQRGKAVILHGDPEGKNFCSGADLKTTEA-LSSPQAGVVMCLFMQNILTRLQQLPLISVAAVSGSAVGGGAEIITACDFRLVSPSSVIQFIHCKMGLSPGWGGGTRLVRLVGPQKALKLLAGGESIRATESLGLGLADDLIQ-GDDIIKQASDWLDKYTSQP-VEVVRAMKNVVTAASQLPPDKALSKEKDIFGGLWKGPANKEALARAL 327          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZF0_9STRA4.150e-203100.00CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
UPI0010A415CC2.530e-1428.25phosphatidylinositol transfer protein 3-like n=1 T... [more]
A0A0L0DPN5_THETB3.100e-1427.50Random slug protein 5 n=1 Tax=Thecamonas trahens A... [more]
A0A7S4M7N4_9EUKA3.270e-1425.56Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A7S2WCV0_9STRA5.340e-1428.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A137P5W3_CONC29.910e-1426.22CRAL/TRIO domain-containing protein n=1 Tax=Conidi... [more]
A0A6D2K3U3_9BRAS1.290e-1329.65CRAL-TRIO domain-containing protein n=1 Tax=Microt... [more]
A0A1J7H719_LUPAN2.790e-1327.13CRAL-TRIO domain-containing protein n=1 Tax=Lupinu... [more]
A0A2Z7CKJ7_9LAMI3.740e-1227.20Sec14 cytosolic factor-like n=1 Tax=Dorcoceras hyg... [more]
A0A453GDY3_AEGTS3.860e-1126.79CRAL-TRIO domain-containing protein n=14 Tax=Triti... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|348648 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z365_9STRA4.850e-231100.00ClpP/crotonase-like domain-containing protein n=1 ... [more]
D7FNG8_ECTSI1.390e-6858.41Enoyl-CoA hydratase domain-containing protein n=2 ... [more]
A0A7S4B265_CHRCT9.660e-6448.39Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
UPI0009E4858E4.130e-6046.42ethylmalonyl-CoA decarboxylase-like n=1 Tax=Orbice... [more]
A0A7S3F357_9EUKA1.030e-5949.62Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
UPI00145572EB2.630e-5743.12ethylmalonyl-CoA decarboxylase-like n=1 Tax=Asteri... [more]
A0A8K0ENQ4_BRALA1.150e-5544.62ECHS1 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A6P4ZPQ6_BRABE2.270e-5544.62ethylmalonyl-CoA decarboxylase-like n=1 Tax=Branch... [more]
UPI00188586EE3.370e-5544.87ethylmalonyl-CoA decarboxylase-like n=1 Tax=Pollic... [more]
A0A8B7YI19_ACAPL3.530e-5543.12ethylmalonyl-CoA decarboxylase-like n=1 Tax=Acanth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_28contigContig_28:1129922..1131584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348648|estExt_Genemark1.C_Ctg_280102
Descriptionintermembrane phospholipid transfer
COG categoryE
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota
Evalue1.04e-30
Seed ortholog2880.D8LGX4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-14_001570.1
TranscriptId348970
TrackFilteredModels1
ProteinId348648
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348648gene_9055Tribonema minus UTEX_B_3156 geneContig_28 1129922..1131584 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9055_2exon_9055_2Tribonema minus UTEX_B_3156 exonContig_28 1129922..1130861 -
exon_9055_1exon_9055_1Tribonema minus UTEX_B_3156 exonContig_28 1131579..1131584 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9055UTR3_9055Tribonema minus UTEX_B_3156 three_prime_UTRContig_28 1129922..1130033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9055CDS_9055Tribonema minus UTEX_B_3156 CDSContig_28 1131579..1131584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348648Trimin1|348648|estExt_Genemark1.C_Ctg_280102Tribonema minus UTEX_B_3156 polypeptideContig_28 1130034..1131584 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9055 ID=mRNA_9055|Name=jgi.p|Trimin1|348648|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=946bp|location=Sequence derived from alignment at Contig_28:1129922..1131584- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCTCCGAGGACCAGCATGCCATGATTCAGTCAACTCTGCGGCA
GCTTCAGGAAGTGCCTGTGGACCTCTTCGAGCAGGCGGGCGTCAGCTTCC
CACCCGACGAGGCCCTGTGCTGGCGCTACCTGGACGCAGCAGGATGGCGG
GAGTGTGTCCGCAGCAAGCCGATTTCCGAATATATCCGGGACACGCTGGA
GTGGCGTCGGAATTTGAAGGTGCCGAAGCTGGCTGCGGAAACACTGCTCT
CGCCCGCCCTTCAGACCAATCTGTGCACTGGGTCCATTTACGTAGACGGT
TTTGATGCAAGCGGGGACCATCCGCTCGTCATGTTCCGCCTGGCCCGCTT
CAAAGGAACAGAGACCACCGAAGACTTCATCGAGTATATGGTCTACAACC
TAGAAAGAGCCTTGTTGCGCGTGCCTCAGGAGCAGAGAGCCCTGGCCTCG
TTTTGCGTACTGTTCAACTGCGATACCGGGGACGCGGGGCAGATGCCGCG
GCTAGCAGCCGTCAGAGAGGCAGTCAACGTGCTGATGCGGCACTACCCCT
CGCGCCTCCACCGCCTGTACGTCGTAAATCCGGGCACCGCGTTCGCGCTC
ACGTGGCGCGTCGTTCGCCCCCTTCTAGAGGCTAACACGCGCAACAAGAT
AGTGTTCGTGCGGGGGCACGGTTCTCCCAACTCCAAGCGTCAGTGCCTGA
GGACCACGCTGGCGCAGACCATCGATTTGAGCACGCTCGAGGTTGACTAC
GGCGGTGACCGCACGTTTGACTTTATGCAGACACTGCCTGCTTGCGTGCA
CTTGAACCACGTCACCGAACAGACCGAGGCCTAGTAGATTTGTGGAAGTG
GAGAACAAGTCTCCCATCCCTGCGTCGATCCTACCCTTTCCCTTCCCTTC
ACTTGTGCATCACACAGCGAGCAAATGAATGTAAATATCTGGCATA
back to top

protein sequence of jgi.p|Trimin1|348648

>Trimin1|348648|estExt_Genemark1.C_Ctg_280102 ID=Trimin1|348648|estExt_Genemark1.C_Ctg_280102|Name=jgi.p|Trimin1|348648|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=278bp
MSLSEDQHAMIQSTLRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWR
ECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDG
FDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALAS
FCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFAL
TWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDY
GGDRTFDFMQTLPACVHLNHVTEQTEA*
back to top

mRNA from alignment at Contig_28:1129922..1131584-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9055 ID=mRNA_9055|Name=jgi.p|Trimin1|348648|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1663bp|location=Sequence derived from alignment at Contig_28:1129922..1131584- (Tribonema minus UTEX_B_3156 )
ATGTCGGTATGTGCATACATCTTGATGATGTCAACAACAATTGTGTGTTC GTTTTCCAGTCGCATTCCTTTTCACAACTCTTTCTGCACCACGTACGTCG TTGCTCCCATGACGGTTTGCATTCACTCATCCGCTACAAACATTAAAGCA GAATGTACACATTTTGTGGGGGATGTGCACATGGGTTCTATGGTTAAAGC ACGCACTACTGACTCTTTCGCATTGGCAGGACGAAGGGCACTCAAAATAG ATGGTACAGCAGATGTCATTGCAACAGAAAATGGGTGCTTTACAGCATGT CAATGCACAGCATACATGCCTCTATGAATCTCAGCAGTGCTGTTTCTAGA GAGCTGTTGTAGCTTACCCCAAGGTTGTAGTAGTGGCTACATGCTAAAAA GGGTCACATTCGAGTTCAACTGACCTGACCTAACAGCTGGGGGGTAAGAA CCTTCTGCAGTGACAGTTTTCGACGGCGAGCACAGCTGTGACCACTGCAT GATCCTGCTGAGGCTACCAGCAGTACTTCTCATGGCAGCCCTGGCATCGC AACTGCCCGCGGAAGCAGTGTCTTCCTCCCCTCTTGCTGTTTCTGCTGCT GTCAGCTCGCCCACCTCTTCCGACAGCGACAGTAGTCAAGCATACCGCAC GCCTGTCAGCAGCCCCCCGCCCTCTCCACGGCTGGTACGGTCCCCAGGAG GAAGCGTGCGATTTGGCGTACAGCTCTCCGAGGACCAGCATGCCATGATT CAGTCAACTCTGCGGCAGCTTCAGGAAGTGCCTGTGGACCTCTTCGAGCA GGCGGGCGTCAGCTTCCCACCCGACGAGGCCCTGTGCTGGCGCTACCTGG ACGCAGCAGGATGGCGGGAGTGTGTCCGCAGCAAGCCGATTTCCGAATAT ATCCGGGACACGCTGGAGTGGCGTCGGAATTTGAAGGTGCCGAAGCTGGC TGCGGAAACACTGCTCTCGCCCGCCCTTCAGACCAATCTGTGCACTGGGT CCATTTACGTAGACGGTTTTGATGCAAGCGGGGACCATCCGCTCGTCATG TTCCGCCTGGCCCGCTTCAAAGGAACAGAGACCACCGAAGACTTCATCGA GTATATGGTCTACAACCTAGAAAGAGCCTTGTTGCGCGTGCCTCAGGAGC AGAGAGCCCTGGCCTCGTTTTGCGTACTGTTCAACTGCGATACCGGGGAC GCGGGGCAGATGCCGCGGCTAGCAGCCGTCAGAGAGGCAGTCAACGTGCT GATGCGGCACTACCCCTCGCGCCTCCACCGCCTGTACGTCGTAAATCCGG GCACCGCGTTCGCGCTCACGTGGCGCGTCGTTCGCCCCCTTCTAGAGGCT AACACGCGCAACAAGATAGTGTTCGTGCGGGGGCACGGTTCTCCCAACTC CAAGCGTCAGTGCCTGAGGACCACGCTGGCGCAGACCATCGATTTGAGCA CGCTCGAGGTTGACTACGGCGGTGACCGCACGTTTGACTTTATGCAGACA CTGCCTGCTTGCGTGCACTTGAACCACGTCACCGAACAGACCGAGGCCTA GTAGATTTGTGGAAGTGGAGAACAAGTCTCCCATCCCTGCGTCGATCCTA CCCTTTCCCTTCCCTTCACTTGTGCATCACACAGCGAGCAAATGAATGTA AATATCTGGCATA
back to top

Coding sequence (CDS) from alignment at Contig_28:1129922..1131584-

>mRNA_9055 ID=mRNA_9055|Name=jgi.p|Trimin1|348648|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=834bp|location=Sequence derived from alignment at Contig_28:1129922..1131584- (Tribonema minus UTEX_B_3156 )
ATGTCGCTCTCCGAGGACCAGCATGCCATGATTCAGTCAACTCTGCGGCA
GCTTCAGGAAGTGCCTGTGGACCTCTTCGAGCAGGCGGGCGTCAGCTTCC
CACCCGACGAGGCCCTGTGCTGGCGCTACCTGGACGCAGCAGGATGGCGG
GAGTGTGTCCGCAGCAAGCCGATTTCCGAATATATCCGGGACACGCTGGA
GTGGCGTCGGAATTTGAAGGTGCCGAAGCTGGCTGCGGAAACACTGCTCT
CGCCCGCCCTTCAGACCAATCTGTGCACTGGGTCCATTTACGTAGACGGT
TTTGATGCAAGCGGGGACCATCCGCTCGTCATGTTCCGCCTGGCCCGCTT
CAAAGGAACAGAGACCACCGAAGACTTCATCGAGTATATGGTCTACAACC
TAGAAAGAGCCTTGTTGCGCGTGCCTCAGGAGCAGAGAGCCCTGGCCTCG
TTTTGCGTACTGTTCAACTGCGATACCGGGGACGCGGGGCAGATGCCGCG
GCTAGCAGCCGTCAGAGAGGCAGTCAACGTGCTGATGCGGCACTACCCCT
CGCGCCTCCACCGCCTGTACGTCGTAAATCCGGGCACCGCGTTCGCGCTC
ACGTGGCGCGTCGTTCGCCCCCTTCTAGAGGCTAACACGCGCAACAAGAT
AGTGTTCGTGCGGGGGCACGGTTCTCCCAACTCCAAGCGTCAGTGCCTGA
GGACCACGCTGGCGCAGACCATCGATTTGAGCACGCTCGAGGTTGACTAC
GGCGGTGACCGCACGTTTGACTTTATGCAGACACTGCCTGCTTGCGTGCA
CTTGAACCACGTCACCGAACAGACCGAGGCCTAG
back to top