mRNA_9010 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: A0A835YZB5_9STRA (NFACT-R_1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZB5_9STRA) HSP 1 Score: 347 bits (889), Expect = 3.000e-120 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 Query: 1 MVRLSIISITTTFSFASTQVQKGGSEAPKGKKXXXXXXXXXXXXXPAKADAQQKGSIKGLTQYRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQALLEGSDAPVSQ 567 MVRLSIISITTTFSFASTQVQKGGSEAPKGKKXXXXXXXXXXXXXPAKADAQQKGSIKGLTQYRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQALLEGSDAPVSQ Sbjct: 1 MVRLSIISITTTFSFASTQVQKGGSEAPKGKKXXXXXXXXXXXXXPAKADAQQKGSIKGLTQYRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQALLEGSDAPVSQ 189
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: A0A6H5L2J2_9PHAE (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J2_9PHAE) HSP 1 Score: 156 bits (394), Expect = 6.260e-41 Identity = 72/122 (59.02%), Postives = 93/122 (76.23%), Query Frame = 1 Query: 175 GLTQYRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQALL 540 GL + R VLVGRNN QNERITF +ARAH++WLHARGV G+HVL+R DPGQ++ D DL FAADVAA+FSKAR S++ PVD +SPK + ++ G GPGMV+FD +V+ G+P R +A + Sbjct: 572 GLLELRREPGAPAVLVGRNNQQNERITFSLARAHELWLHARGVAGAHVLLRLDPGQEVEDDDLAFAADVAAFFSKARQSASTPVDYISPKMVKKLGGGGPGMVKFDGAKVVRGEPGRVEAAV 693
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: D8LSX7_ECTSI (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX7_ECTSI) HSP 1 Score: 152 bits (384), Expect = 1.430e-39 Identity = 73/123 (59.35%), Postives = 93/123 (75.61%), Query Frame = 1 Query: 175 GLTQYRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDP-RRAQALL 540 GL + R VLVGRNN QNERITF +AR H++WLHARGV G+HVL+R DPGQ++ D DL FAADVAA+FSKAR S++ PVD +SPK + ++ G GPGMV+FD +V+ G+P RR AL+ Sbjct: 567 GLLELRREPGAPAVLVGRNNQQNERITFSLARGHELWLHARGVAGAHVLLRLDPGQEVEDDDLAFAADVAAFFSKARQSASTPVDYISPKMVKKLGGGGPGMVKFDGAKVVRGEPGRRIFALV 689
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: W7TLK7_9STRA (Fibronectin-binding a domain protein n=4 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLK7_9STRA) HSP 1 Score: 144 bits (362), Expect = 2.020e-36 Identity = 67/129 (51.94%), Postives = 91/129 (70.54%), Query Frame = 1 Query: 178 LTQYRTPE----AGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQALLEGSD 552 + +R P + VVV VGRN+ QN+ +TFQ+AR H++W HA+GVPG+H L+R DPG ++ DAD++FAAD+AAYFSKAR S VPV SPK + RV G GPGMV K +V+WG P R + ++ +D Sbjct: 628 IQSFRPPSVHSTSNVVVYVGRNSKQNDYVTFQLARDHELWFHAQGVPGAHCLMRIDPGVEVSDADMQFAADLAAYFSKARGSGQVPVIWTSPKYLKRVVGGGPGMVHVSKEKVLWGRPSRGEKIVLEND 756
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: A0A7S4D4H0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4H0_HETAK) HSP 1 Score: 140 bits (354), Expect = 7.790e-36 Identity = 66/120 (55.00%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 166 SIKGLTQYRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRR 525 S+ G + + + V+LVGRN+ QNER++F+VAR HD+WLH RGVPGSH L+R +PG+D DL+ AADVAAY SKAR SSNVPV SP + ++ G PGMV + EVIW DP R Sbjct: 432 SLDGFLKLQRSPSSPVLLVGRNSQQNERLSFKVAREHDVWLHVRGVPGSHCLLRLEPGRDPSPEDLRHAADVAAYHSKARGSSNVPVMYTSPANVKKISGGPPGMVHLMREEVIWADPGR 551
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: A0A8J7DL50_9CYAN (Rqc2 homolog RqcH n=2 Tax=Romeria TaxID=945765 RepID=A0A8J7DL50_9CYAN) HSP 1 Score: 131 bits (330), Expect = 2.480e-32 Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = 1 Query: 139 AKADAQQKGSIKGLTQYRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQALLEGS 549 AKAD+ + +YRTP+ GV +LVGRNN QNE +TF+ A +D+WLH + +PGSHVL+R DPG D L+FAAD AAY+S+A + VPV PK + + GA PGMV + + V+WG P+RA A L+ S Sbjct: 449 AKADSASQ-----FHRYRTPD-GVELLVGRNNRQNEELTFKQATDYDLWLHTQEIPGSHVLLRLDPGAVASDQTLQFAADFAAYYSRAHQADQVPVVYTEPKHVYKPKGAHPGMVIYRQERVLWGQPQRALAYLQQS 579
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: Q2JXM6_SYNJA (Rqc2 homolog RqcH n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=Q2JXM6_SYNJA) HSP 1 Score: 131 bits (330), Expect = 2.730e-32 Identity = 65/142 (45.77%), Postives = 90/142 (63.38%), Query Frame = 1 Query: 136 PAKADAQQKGSIKGLTQYR-TPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQALLEGSDAP 558 P++A+ ++ S YR T +G + VGRNN QN+R+TF+VA+ D W HA+ +PGSHVL+R PG DL+ AAD+AAYFS+ R S VPV PK + + G+ PGMV + + +V+WG P RAQ L+E AP Sbjct: 451 PSRAEGSRRASSASFNPYRFTSPSGFSIWVGRNNWQNDRLTFRVAQDQDWWFHAQEIPGSHVLLRLPPGAVAESEDLQAAADLAAYFSRGRFSDQVPVVYTRPKCVFKPKGSPPGMVVYQQEQVLWGRPSRAQLLVEKEGAP 592
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: UPI0019E19E93 (NFACT family protein n=1 Tax=Pseudanabaenaceae cyanobacterium LEGE 13415 TaxID=2777976 RepID=UPI0019E19E93) HSP 1 Score: 124 bits (311), Expect = 1.220e-31 Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = 1 Query: 142 KADAQQKGSIKGLTQYRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQAL 537 KA+ QQ I+ +YRTP +G +L+GRNN QN+++TF+ A +D+W H + +PGSHVL+R +PG + DL+F A++AAY+S+AR S VPV PK + + GA PG V + + VIWG P+R + + Sbjct: 127 KANVQQDSEIQP-HRYRTP-SGFELLIGRNNRQNDQLTFRTATEYDLWFHTQEIPGSHVLLRLEPGAIADETDLQFTANLAAYYSRARQSEQVPVIYTEPKYVYKPKGAKPGTVIYKQERVIWGQPQRGREI 256
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: UPI000EFCECAE (fibronectin-binding domain-containing protein n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI000EFCECAE) HSP 1 Score: 129 bits (324), Expect = 1.800e-31 Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 1 Query: 142 KADAQQKGSIKGLTQYRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQALLEGSDAPVS 564 K+ Q+ + G +Y TP+ G +L+GRNN QNE++TF+ A +D+WLHA+ +PGSHVL+R D G D L+ AA +AAY+S+AR S VPV PK + + GA PGMV + V+WG P+RA A ++ D+ + Sbjct: 456 KSGRSQEQDLSGFRRYTTPQ-GFELLIGRNNHQNEQLTFKQASDYDLWLHAQEIPGSHVLLRLDAGTVPGDETLQLAASLAAYYSRARQSDQVPVVYTEPKNVYKPKGALPGMVIYKHERVLWGQPQRALAFIDAVDSSTN 595
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Match: A0A2W4ZRF5_9CYAN (Rqc2 homolog RqcH n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4ZRF5_9CYAN) HSP 1 Score: 128 bits (322), Expect = 3.520e-31 Identity = 59/120 (49.17%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 187 YRTPEAGVVVLVGRNNLQNERITFQVARAHDIWLHARGVPGSHVLVRCDPGQDLPDADLKFAADVAAYFSKARNSSNVPVDRVSPKGISRVPGAGPGMVQFDKTEVIWGDPRRAQALLEG 546 Y TP+ G+ +L+GRNN QNE++TF+ A +D+WLHA+ +PGSHVL+R G D L+ AA++AAY+S+AR S VPV PK + + GA PGMV + + V+WG P++AQAL++G Sbjct: 484 YTTPQ-GIDILIGRNNAQNEQLTFKQASDYDLWLHAQEIPGSHVLLRLSAGDVPTDDTLQLAANLAAYYSRARQSDQVPVVYTEPKNVYKPKGALPGMVIYKRERVLWGQPQQAQALIDG 602 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163996 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9010 ID=mRNA_9010|Name=jgi.p|Trimin1|163996|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=570bp|location=Sequence derived from alignment at Contig_28:597892..599860- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTCCGCCTGAGCATCATCAGCATCACCACAACTTTTTCATTCGCATCback to top protein sequence of jgi.p|Trimin1|163996 >Trimin1|163996|e_gw1.28.52.1 ID=Trimin1|163996|e_gw1.28.52.1|Name=jgi.p|Trimin1|163996|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=190bp MVRLSIISITTTFSFASTQVQKGGSEAPKGKKGKKPPAGKGGKGGPAKADback to top mRNA from alignment at Contig_28:597892..599860- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9010 ID=mRNA_9010|Name=jgi.p|Trimin1|163996|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1969bp|location=Sequence derived from alignment at Contig_28:597892..599860- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_28:597892..599860- >mRNA_9010 ID=mRNA_9010|Name=jgi.p|Trimin1|163996|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=570bp|location=Sequence derived from alignment at Contig_28:597892..599860- (Tribonema minus UTEX_B_3156 )back to top |