mRNA_9002 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348622
Unique NamemRNA_9002
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348622 vs. uniprot
Match: A0A835YXU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU0_9STRA)

HSP 1 Score: 254 bits (649), Expect = 7.800e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 3 
Query:    3 STPVTALQPPAAPRCSSNRRAALFSVFLPVAAAAGIALGEPALAAAAETAEGKRLWLSGKSGGPKTDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGERDRDECLQRCQDSCCFSYVQCTYPVVQNK 380
            STPVTALQPPAAPRCSSNRRAALFSVFLPVAAAAGIALGEPALAAAAETAEGKRLWLSGKSGGPKTDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGERDRDECLQRCQDSCCFSYVQCTYPVVQNK
Sbjct:    1 STPVTALQPPAAPRCSSNRRAALFSVFLPVAAAAGIALGEPALAAAAETAEGKRLWLSGKSGGPKTDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGERDRDECLQRCQDSCCFSYVQCTYPVVQNK 126
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BLAST of jgi.p|Trimin1|348622 vs. uniprot
Match: D8LIY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY2_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.490e-31
Identity = 60/98 (61.22%), Postives = 69/98 (70.41%), Query Frame = 3 
Query:   90 VAAAAGIALGEPALAAAAETAEGKRLWLSGKSGGPK-TDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGERDRDECLQRCQDSCCFSYVQCTYPVVQNK 380
            V A  G+A  E A AA       ++ W+SGK   PK +DDK GT+K+SKYLRCLSNCLA CQKP+Y  ERDR+ECLQ CQD CC SY QCTY V QNK
Sbjct:   97 VGAGGGLAFPEEARAAKGSADATQKEWISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPERDREECLQACQDECCMSYEQCTYTVTQNK 194
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BLAST of jgi.p|Trimin1|348622 vs. uniprot
Match: A0A0G4ECE9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ECE9_VITBC)

HSP 1 Score: 98.6 bits (244), Expect = 2.750e-22
Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = 3 
Query:   54 NRRAALFSVFLPVAAAAGIALGEPALAAAAETAEG-KRLWLSGKSGGPKTDDKA--GTKKDSKYLRCLSNCLAGCQKP-SYDGERDRDECLQRCQDSCCFSYVQCTYPV 368
            +RR A     +   AAA   L     A+AAE  EG KRLW+SGKS  PK D KA  GTK+D K+L+CLS CL+ C+KP SY   +  DECL+ C+D CCF+Y QC+Y +
Sbjct:   45 SRRDAPLLPLISAIAAASWQLAVSISASAAEGGEGEKRLWISGKSTEPKKDPKAREGTKRDPKFLKCLSQCLSECKKPGSYGYSKSEDECLEDCRDECCFTYEQCSYAI 153
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BLAST of jgi.p|Trimin1|348622 vs. uniprot
Match: A0A7S2UWJ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWJ7_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.250e-20
Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 3 
Query:   54 NRRAALFSVFLPVAAAAGIALGEPALAAAAETAEGKRLWLSGKSGGPK-TDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGERDRDECLQRCQDSCCFSYVQCTYPV 368
             RRAA+ +     AA+ G+ L  P   + A+ A+ +RLWLSGK   PK + D  GTKKD  +LRCLSNCLA CQKP+   +RDR ECL+ C+D CC +Y QCTY +
Sbjct:  110 GRRAAVATAL---AASLGVIL--PPAFSPADAAD-ERLWLSGKGDKPKDSKDTKGTKKDINFLRCLSNCLAVCQKPTSGVQRDRSECLEDCRDECCQTYEQCTYTI 209
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BLAST of jgi.p|Trimin1|348622 vs. uniprot
Match: A0A7S2H145_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H145_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.880e-18
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 3 
Query:  147 TAEGKRLWLSGKSGGPK-TDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGER-DRDECLQRCQDSCCFSYVQCT 359
            +AE  +LW+SGKS  PK + DK GTKKD+K+LRCLSNC++ CQ+    G+  DRD C  +CQD CC +Y QCT
Sbjct:   64 SAEPSKLWISGKSEKPKDSKDKTGTKKDTKFLRCLSNCVSDCQQLGATGKMTDRDTCYAQCQDDCCETYEQCT 136
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BLAST of jgi.p|Trimin1|348622 vs. uniprot
Match: W7U4A4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4A4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.270e-16
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  162 RLWLSGKSGGPK-TDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGERDRDECLQRCQDSCCFSYVQCTY 362
            R W+SGKS  P+ + D+ GTK+DS YLRCLS+C   C+KP     +D  ECL+ CQD CC +Y QCTY
Sbjct:  163 RRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTY 230
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348622 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YXU0_9STRA7.800e-84100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LIY2_ECTSI3.490e-3161.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4ECE9_VITBC2.750e-2250.46Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2UWJ7_9STRA1.250e-2050.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2H145_9STRA7.880e-1856.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7U4A4_9STRA2.270e-1654.41Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_28contigContig_28:496152..497896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348622|estExt_Genemark1.C_Ctg_280054
Max annot lvl2759|Eukaryota
EggNOG OGs2E8UA@1|root,2SF9D@2759|Eukaryota
Evalue2.96e-33
Seed ortholog2880.D8LIY2
Hectar predicted targeting categorysignal peptide
TranscriptId348944
TrackFilteredModels1
ProteinId348622
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348622gene_9002Tribonema minus UTEX_B_3156 geneContig_28 496152..497896 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9002_1exon_9002_1Tribonema minus UTEX_B_3156 exonContig_28 496152..496354 +
exon_9002_2exon_9002_2Tribonema minus UTEX_B_3156 exonContig_28 497387..497896 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9002UTR5_9002Tribonema minus UTEX_B_3156 five_prime_UTRContig_28 496152..496153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9002CDS_9002Tribonema minus UTEX_B_3156 CDSContig_28 496154..496354 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9002UTR3_9002Tribonema minus UTEX_B_3156 three_prime_UTRContig_28 497567..497896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348622Trimin1|348622|estExt_Genemark1.C_Ctg_280054Tribonema minus UTEX_B_3156 polypeptideContig_28 496154..497566 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9002 ID=mRNA_9002|Name=jgi.p|Trimin1|348622|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=713bp|location=Sequence derived from alignment at Contig_28:496152..497896+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TAAGCACACCCGTCACAGCACTTCAACCTCCAGCAGCACCGAGATGTAGC
AGCAACAGAAGAGCGGCTCTGTTCTCTGTGTTCCTGCCTGTGGCGGCAGC
TGCAGGCATTGCGCTCGGAGAGCCAGCATTGGCAGCTGCTGCGGAGACTG
CAGAGGGGAAGCGATTATGGCTGAGTGGAAAATCGGGAGGCCCGAAAACA
GATGATAAAGCGGGCACGAAGAAGGACTCCAAGTACCTGCGGTGCCTGAG
CAACTGCCTCGCGGGGTGCCAGAAGCCCAGCTACGACGGCGAGCGCGACC
GCGACGAGTGCCTGCAGCGCTGCCAGGACTCGTGCTGCTTCTCTTACGTG
CAGTGCACGTATCCCGTAGTGCAGAACAAGTAGCGAGTCAGTGGAGTCGA
GACTGGTTGCTGCTCTGCGTCCTGATGTAGGCTGTGTCACAGAGCCGCGT
GTGATAGTGGTGCTGGCGCATACGCGCACCCGCGTTTCTTGTGCTGCTGC
TGCTGTAGTGCACAGTGCGCGCATCCCATGCCGCTGTGCCTCTCAACAAG
TGGACGTATGGGTACACACATTACATTTGTTTACTATATGGAGCGTACGT
TTGAGTGCAGACCTGCTATCACGCAGCACTGGCAGCAGTTAGAGTCGAAG
TGCTGCGTAATGAGCACTTTTGAAAGACCATTTATTACATTATAAACACA
CGTTGGATAAATG
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protein sequence of jgi.p|Trimin1|348622

>Trimin1|348622|estExt_Genemark1.C_Ctg_280054 ID=Trimin1|348622|estExt_Genemark1.C_Ctg_280054|Name=jgi.p|Trimin1|348622|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
STPVTALQPPAAPRCSSNRRAALFSVFLPVAAAAGIALGEPALAAAAETA
EGKRLWLSGKSGGPKTDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGERDR
DECLQRCQDSCCFSYVQCTYPVVQNK*
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mRNA from alignment at Contig_28:496152..497896+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9002 ID=mRNA_9002|Name=jgi.p|Trimin1|348622|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1745bp|location=Sequence derived from alignment at Contig_28:496152..497896+ (Tribonema minus UTEX_B_3156 )
TAAGCACACCCGTCACAGCACTTCAACCTCCAGCAGCACCGAGATGTAGC
AGCAACAGAAGAGCGGCTCTGTTCTCTGTGTTCCTGCCTGTGGCGGCAGC
TGCAGGCATTGCGCTCGGAGAGCCAGCATTGGCAGCTGCTGCGGAGACTG
CAGAGGGGAAGCGATTATGGCTGAGTGGAAAATCGGGAGGCCCGAAAACA
GATGTGAGTCTCACCGTAGCTGTGGATGTTGACAAGTTTTACTCAGTAGA
GCCAAGTATCTGGAGTGCACCAATGTTGGCAATGCAGGAGCTGGACATAG
CAGGTGTAACGCCTCAGAAGAAGAAAAGCAATCAAGCTACTGTACTGGTG
GCTACTCCCAAATTACATGAACAGTCCCCAAGTTGAAGTTGAGTCCGAAT
TGCTTAGCCGTGATTGATCATCTGTTGCACACAAATAGTCGATTTGTAAT
ATGGTATTATGGAGCATCATGGTGCGTATGATGTAATCCGCCAACAGGCC
TGCACCATGCTTCCTTTAGCGCCAGCCATGACATGTTTAATCGCAATGAT
TGCATGCGTTGATGAAACCGCCCCTGTTGCCCAGTCTGCTCATACAACAG
AACGTGAAAAGGCTCGGTCACTTATGAATGTGCATGATAATCACGTTTAC
TTTTCTAACCTTTGCATCATAGCTCAGCGTCCGCTGCCAGATCAACTCAC
AATGACCCATCGCAGATCGCAGCACATTCGCTTCGACTCTAGTAGACATC
ATTTTTGTCACCACGCTCCCCTACTTGGCAACATGCCCGCTGCACTGACG
CAACAGTTTTCTTCTGCCCAGCTCTGCAATAAAGTTATTCAGCATCTGCT
TGTGCGTTTGTTGTGCAACTGCAAGACAAGTGAGTGTTCTGTGCTGGCTG
TTTTGCAAAACACTGCTGGTTTGTGCAACCTGTCCCGGAGCCCATATATG
AAACACGCGCTGATTGTGCTGCGCTGCTGCACATGTGCTTCAAAGTCAAG
AGAGCGTACGAAACGCTAAGCACGTCCAGTGCCTGAGAGCAGGTGGTCTA
CACAGTGCCTTATGGCTCACGCCTTCGCGCACGGACGCCAACAGGCGTAT
TTCACAATACAGAACACGTACGGTCAGACAAAAACCCAACCACATACGGG
TCCCTGCACAGTCGTCCAATTGAACCTGATGCGCACAGCTCATCTCTTCG
CTCAAATGCCGCCTGTCTGTGTCTGCCTACTGCAGGATAAAGCGGGCACG
AAGAAGGACTCCAAGTACCTGCGGTGCCTGAGCAACTGCCTCGCGGGGTG
CCAGAAGCCCAGCTACGACGGCGAGCGCGACCGCGACGAGTGCCTGCAGC
GCTGCCAGGACTCGTGCTGCTTCTCTTACGTGCAGTGCACGTATCCCGTA
GTGCAGAACAAGTAGCGAGTCAGTGGAGTCGAGACTGGTTGCTGCTCTGC
GTCCTGATGTAGGCTGTGTCACAGAGCCGCGTGTGATAGTGGTGCTGGCG
CATACGCGCACCCGCGTTTCTTGTGCTGCTGCTGCTGTAGTGCACAGTGC
GCGCATCCCATGCCGCTGTGCCTCTCAACAAGTGGACGTATGGGTACACA
CATTACATTTGTTTACTATATGGAGCGTACGTTTGAGTGCAGACCTGCTA
TCACGCAGCACTGGCAGCAGTTAGAGTCGAAGTGCTGCGTAATGAGCACT
TTTGAAAGACCATTTATTACATTATAAACACACGTTGGATAAATG
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Coding sequence (CDS) from alignment at Contig_28:496152..497896+

>mRNA_9002 ID=mRNA_9002|Name=jgi.p|Trimin1|348622|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_28:496152..497896+ (Tribonema minus UTEX_B_3156 )
AGCACACCCGTCACAGCACTTCAACCTCCAGCAGCACCGAGATGTAGCAG
CAACAGAAGAGCGGCTCTGTTCTCTGTGTTCCTGCCTGTGGCGGCAGCTG
CAGGCATTGCGCTCGGAGAGCCAGCATTGGCAGCTGCTGCGGAGACTGCA
GAGGGGAAGCGATTATGGCTGAGTGGAAAATCGGGAGGCCCGAAAACAGA
TGATAAAGCGGGCACGAAGAAGGACTCCAAGTACCTGCGGTGCCTGAGCA
ACTGCCTCGCGGGGTGCCAGAAGCCCAGCTACGACGGCGAGCGCGACCGC
GACGAGTGCCTGCAGCGCTGCCAGGACTCGTGCTGCTTCTCTTACGTGCA
GTGCACGTATCCCGTAGTGCAGAACAAGTAG
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