mRNA_8953 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167423
Unique NamemRNA_8953
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A835YR69_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR69_9STRA)

HSP 1 Score: 442 bits (1137), Expect = 2.880e-157
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1
Query:    1 MVHKFAEAHHPPAHQPGQISAGPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPGCTV 639
            MVHKFAEAHHPPAHQPGQISAGPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPGCTV
Sbjct:    1 MVHKFAEAHHPPAHQPGQISAGPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPGCTV 213          
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A835ZDY7_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY7_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.020e-68
Identity = 110/189 (58.20%), Postives = 129/189 (68.25%), Query Frame = 1
Query:   64 GPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPG 630
            GPLGL AFG+TTLMLMY+EA W  PGF +VV C A+FFGG  QLLAGMWEM  G TF+ATAFSSYG FW+GF  LRVLK       GF WG  +AG+   EAL+L  WG++S+L+F LTF K  AL+  F  +   FFLLAGG  + G+      R+ GGYVGL CAA AVY   GEM  ETY +R PG
Sbjct:   20 GPLGLFAFGLTTLMLMYIEAEWAAPGFAEVVACTALFFGGVVQLLAGMWEMHRGSTFAATAFSSYGAFWMGFAALRVLKLV-----GFTWGADAAGYAQAEALYLGTWGMLSVLFFALTFAKCVALRATFALLVATFFLLAGGQFDHGA------RMVGGYVGLACAACAVYTGFGEMVLETYDVRLPG 197          
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A835ZDQ2_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDQ2_9STRA)

HSP 1 Score: 209 bits (532), Expect = 5.530e-65
Identity = 108/192 (56.25%), Postives = 132/192 (68.75%), Query Frame = 1
Query:   52 QISAGPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWP 627
            Q +  PLGL AF +TT+MLMYVEA W EPGFV+VVVC AIFFGGA Q++AGMWEMA G TF+ATAFSSYG FWLG+  LRVLK       GF +GP++ G+ET EAL+L  WG+ S L   L F KP AL+  F  +T+AFFLL  G  +      + ++ AGGYVGL+CAA A Y +  EM  ETY  + P
Sbjct:   45 QANPAPLGLFAFALTTMMLMYVEAEWAEPGFVEVVVCTAIFFGGAVQIMAGMWEMARGSTFAATAFSSYGGFWLGWAFLRVLKLA-----GFTFGPTTEGYETAEALYLGTWGLFSFLMSLLLFGKPWALRLTFYILTLAFFLLVIGEFH------EHAKQAGGYVGLVCAAGAAYTAFSEMVEETYHFKMP 225          
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A0G4FF82_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FF82_VITBC)

HSP 1 Score: 160 bits (404), Expect = 2.140e-45
Identity = 79/183 (43.17%), Postives = 117/183 (63.93%), Query Frame = 1
Query:   67 PLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYG 615
            PLGL++FGMTTL LMY++  W E G  ++V+ YA+++GG  Q++AG+WEM  G TF+A+AFSSYG FW G+ +        + + G+  G     F TG+AL+L QWGV++ L+F  T +K R LQ +FL ++I F+LLAGG  +      +  ++  GY G L   +A+Y +  E+  ETYG
Sbjct:   40 PLGLLSFGMTTLFLMYIDMEWSEGGVKELVIAYALWYGGVGQIIAGIWEMLKGNTFAASAFSSYGFFWCGWSLFN----SKVVEAGYTPGSK---FATGDALYLGQWGVLTFLFFLATLQKNRCLQAVFLLLSITFWLLAGGVFD------ETCKIVAGYFGFLTGLAAIYTAFAEIYEETYG 209          
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A699ZR90_HAELA (Uncharacterized protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZR90_HAELA)

HSP 1 Score: 155 bits (392), Expect = 6.160e-44
Identity = 83/190 (43.68%), Postives = 114/190 (60.00%), Query Frame = 1
Query:   64 GPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPS-SAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPG 630
            GP GL+ FGMTT MLM+V   W   GF+ VV+ YA+FFGGA QL+AG+ E+  G TF+ TAFSSYGCFW+G+ +        +        PS +A   TG+ L+   WGV++ L++ +T +K   LQ IFL++ I FFLLAGG+ +   K A       GYVG  C +SA+Y +I  +  +  G   PG
Sbjct:   36 GPFGLLCFGMTTCMLMFVTTTWSSGGFIPVVMSYAMFFGGAGQLIAGILELIKGNTFAGTAFSSYGCFWMGWFLFNYFAVSKIT-------PSVTAVAMTGDTLWCGLWGVLTFLFYIVTLRKNGCLQTIFLSLWITFFLLAGGNYSDKCKEAA------GYVGFFCGSSAIYAAIAMLYQDELGWTLPG 212          
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A0L0FR60_9EUKA (Uncharacterized protein n=5 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FR60_9EUKA)

HSP 1 Score: 154 bits (388), Expect = 2.460e-43
Identity = 83/188 (44.15%), Postives = 114/188 (60.64%), Query Frame = 1
Query:   49 GQISAGPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETY 612
            G  +AGP+GLM FGMTT++L +  AG  E G V ++ CY IF GG AQLLAGMWE++ G+ F+ TAF++YG FW+G G+   L    +  G  A G  S G    + ++L  WGV + L F  TF+  R +QF+FL++++ FFLLAGG  + G           G VG+ C ASA+YL   E+  E Y
Sbjct:   33 GPANAGPIGLMGFGMTTVLLNFYNAGVAESGTVGLIACYGIFHGGLAQLLAGMWEISAGKVFTGTAFTTYGAFWMGLGLFDGL----IVTGNLAPGDISEG----KCIWLCIWGVFTFLMFLGTFRANRTVQFVFLSLSLLFFLLAGGVYSEGVHKTA------GAVGIACGASAMYLGWAEIMNEVY 206          
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A383W536_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W536_TETOB)

HSP 1 Score: 151 bits (381), Expect = 4.370e-42
Identity = 81/205 (39.51%), Postives = 113/205 (55.12%), Query Frame = 1
Query:   31 PPAHQPGQISAGPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAG-----FETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPG 630
            P   +PG  +  PLGL+ FGMTT+MLM+++A W E   +  V+CYA F+GG  Q++AG++E+  G TF+ TAF SYG FW+ F    VL + +        G  +A      F  G  L    WG+ +  +F  T +K   L  +F ++TI FFLLAG   N      +    A GYVGL C ASA+Y +  E+ +E  GI  PG
Sbjct:   30 PAPARPGLANPAPLGLLCFGMTTVMLMFIDAKWAEDPAIIAVMCYACFYGGFGQMVAGVFELIKGNTFAGTAFFSYGAFWMAFFTNNVLVKTAAASAAAVPGAHAAFLGAPFFHVGSTLIYCLWGLFTFCFFVPTLRKNGCLMTVFGSLTITFFLLAGAQWN------KQVGTAAGYVGLFCGASAIYTAFAEIWHENLGIMAPG 228          
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A0L0FM69_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FM69_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 3.230e-41
Identity = 79/190 (41.58%), Postives = 115/190 (60.53%), Query Frame = 1
Query:   49 GQISAGPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVL-KQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGG-HANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETY 612
            G  +AGP+GLMAFGMTT++L +  AG  E G V ++ CY I  GG  QLLAGMWE++ G+ F+ TAF+SYG FW+G G+  +L    +L  G  +          G+ ++L  WG  + + F  TF+  R +QF+FL++ + FFLLAGG +++   K+A       G VG++C  SA+YL   E+  E Y
Sbjct:   34 GPANAGPIGLMAFGMTTVLLNFYNAGIAESGTVGLIACYGIMHGGFVQLLAGMWEISAGKVFTGTAFTSYGAFWMGLGLFDLLIVTNNLVPGDIS---------EGKCVWLCIWGTFTFMMFMGTFRANRTVQFVFLSLALLFFLLAGGVYSDTVHKIA-------GAVGIVCGGSAMYLGWAELMNEVY 207          
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A835YLS5_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS5_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.520e-40
Identity = 76/142 (53.52%), Postives = 91/142 (64.08%), Query Frame = 1
Query:  205 MWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPG 630
            MW+M  G TF+ATAF SY  FWLGF  LRVLK       GF WGP +AG+   EAL+L  WGV+S+L+F LTF +  AL+ +F  +  +FFLLA G  + G+      RVAGGY GL CAA AVY   GEM  ETYG R PG
Sbjct:    1 MWQMHRGSTFAATAFCSYSAFWLGFAALRVLKLA-----GFTWGPDAAGYAQAEALYLGTWGVLSVLFFALTFAERAALRALFALLVASFFLLAAGAFDRGA------RVAGGYCGLACAACAVYTGFGEMVLETYGARLPG 131          
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Match: A0A150J0F4_9EURY (Cation symporter n=4 Tax=Candidatus Methanofastidiosa TaxID=1705400 RepID=A0A150J0F4_9EURY)

HSP 1 Score: 145 bits (366), Expect = 1.880e-40
Identity = 82/184 (44.57%), Postives = 110/184 (59.78%), Query Frame = 1
Query:   64 GPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYG 615
            GPLGL AFG+TTL+L +V A  +    + +V+   IF+GGA Q+ AGMWEM  G TF ATAF+SYG FWLG  ++ +L+    + G  A  P +     G A+FL  WG+ +      T KKP+ALQ +F+T+TI FFLLA G  N          +  GY G+  A +A+YLS  E+  ETYG
Sbjct:    9 GPLGLAAFGLTTLILNFVNAEIIPAESIGMVLPMGIFYGGACQVYAGMWEMKKGNTFGATAFTSYGAFWLGLALMFLLQ----YSGIIAPVPKA-----GLAIFLGAWGIFTAYMTIATLKKPKALQLVFITLTILFFLLAIGQFN------HTVHIIAGYEGIFTALTALYLSAAEVINETYG 177          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167423 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YR69_9STRA2.880e-157100.00GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A835ZDY7_9STRA2.020e-6858.20GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A835ZDQ2_9STRA5.530e-6556.25GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A0G4FF82_VITBC2.140e-4543.17Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A699ZR90_HAELA6.160e-4443.68Uncharacterized protein (Fragment) n=1 Tax=Haemato... [more]
A0A0L0FR60_9EUKA2.460e-4344.15Uncharacterized protein n=5 Tax=Sphaeroforma arcti... [more]
A0A383W536_TETOB4.370e-4239.51Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A0L0FM69_9EUKA3.230e-4141.58Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A835YLS5_9STRA1.520e-4053.52GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A150J0F4_9EURY1.880e-4044.57Cation symporter n=4 Tax=Candidatus Methanofastidi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_50contigContig_50:771302..772138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167423|e_gw1.50.80.1
BRITEko00000
KEGG koko:K07034
Descriptionacetate transmembrane transporter activity
COG categoryS
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG1584@1|root,2QUJS@2759|Eukaryota,39ZTU@33154|Opisthokonta
Evalue3.06e-46
Seed ortholog72019.SARC_04666T0
Hectar predicted targeting categoryother localisation
TranscriptId167745
TrackFilteredModels1
ProteinId167423
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167423gene_8953Tribonema minus UTEX_B_3156 geneContig_50 771302..772138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167423Trimin1|167423|e_gw1.50.80.1Tribonema minus UTEX_B_3156 polypeptideContig_50 771302..772138 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8953_2exon_8953_2Tribonema minus UTEX_B_3156 exonContig_50 771302..771841 -
exon_8953_1exon_8953_1Tribonema minus UTEX_B_3156 exonContig_50 772037..772138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8953CDS_8953Tribonema minus UTEX_B_3156 CDSContig_50 772037..772138 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8953 ID=mRNA_8953|Name=jgi.p|Trimin1|167423|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=642bp|location=Sequence derived from alignment at Contig_50:771302..772138- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCACAAGTTCGCCGAAGCGCACCACCCACCAGCGCACCAGCCGGG
GCAAATATCGGCTGGGCCCCTGGGCCTGATGGCATTCGGCATGACCACCC
TGATGCTCATGTACGTCGAGGCGGGGTGGCTCGAGCCCGGCTTCGTGGAC
GTGGTCGTCTGCTACGCCATCTTCTTCGGCGGCGCGGCGCAGCTGCTCGC
CGGCATGTGGGAGATGGCGTGCGGCCGCACTTTCTCCGCGACCGCTTTCT
CCTCCTACGGCTGCTTCTGGCTCGGCTTCGGGATACTGCGCGTGCTCAAG
CAGCAGAGCCTGCACGACGGCGGTTTCGCGTGGGGCCCCAGCAGCGCCGG
CTTCGAGACGGGCGAGGCGCTGTTCCTCGCGCAGTGGGGCGTCATGTCGC
TGCTGTACTTCACGCTCACGTTCAAGAAGCCGCGCGCGCTGCAGTTCATC
TTCCTCACCGTCACCATCGCGTTCTTCCTGCTCGCCGGCGGCCACGCGAA
CCCCGGCTCCAAGGTCGCGCAAGACTCCAGGGTCGCGGGCGGCTACGTCG
GCCTGCTGTGCGCCGCCTCCGCGGTCTACCTGTCCATCGGGGAGATGCAG
TACGAGACGTACGGCATCAGGTGGCCCGGGTGCACGGTTTAG
back to top

protein sequence of jgi.p|Trimin1|167423

>Trimin1|167423|e_gw1.50.80.1 ID=Trimin1|167423|e_gw1.50.80.1|Name=jgi.p|Trimin1|167423|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=214bp
MVHKFAEAHHPPAHQPGQISAGPLGLMAFGMTTLMLMYVEAGWLEPGFVD
VVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLK
QQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLTFKKPRALQFI
FLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQ
YETYGIRWPGCTV*
back to top

mRNA from alignment at Contig_50:771302..772138-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8953 ID=mRNA_8953|Name=jgi.p|Trimin1|167423|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=837bp|location=Sequence derived from alignment at Contig_50:771302..772138- (Tribonema minus UTEX_B_3156 )
ATGGTTCACAAGTTCGCCGAAGCGCACCACCCACCAGCGCACCAGCCGGG GCAAATATCGGCTGGGCCCCTGGGCCTGATGGCATTCGGCATGACCACCC TGGTGAGCTACGCTATGCACAGCTGAGGCACCTCGCCGTACCTCGAAGTC GCATTGTGGAATTGACAGCCTGCTAATCACCACGCACCACTGTCAGTTGC ACCCGGCTGATCACCACTCTACACTCTCCACTGTCCAATCACCGCGCCCT GCTGATCGCTCACTGCGCCCCTGCTTCCCTTTACCGCAATGCGACAGATG CTCATGTACGTCGAGGCGGGGTGGCTCGAGCCCGGCTTCGTGGACGTGGT CGTCTGCTACGCCATCTTCTTCGGCGGCGCGGCGCAGCTGCTCGCCGGCA TGTGGGAGATGGCGTGCGGCCGCACTTTCTCCGCGACCGCTTTCTCCTCC TACGGCTGCTTCTGGCTCGGCTTCGGGATACTGCGCGTGCTCAAGCAGCA GAGCCTGCACGACGGCGGTTTCGCGTGGGGCCCCAGCAGCGCCGGCTTCG AGACGGGCGAGGCGCTGTTCCTCGCGCAGTGGGGCGTCATGTCGCTGCTG TACTTCACGCTCACGTTCAAGAAGCCGCGCGCGCTGCAGTTCATCTTCCT CACCGTCACCATCGCGTTCTTCCTGCTCGCCGGCGGCCACGCGAACCCCG GCTCCAAGGTCGCGCAAGACTCCAGGGTCGCGGGCGGCTACGTCGGCCTG CTGTGCGCCGCCTCCGCGGTCTACCTGTCCATCGGGGAGATGCAGTACGA GACGTACGGCATCAGGTGGCCCGGGTGCACGGTTTAG
back to top

Coding sequence (CDS) from alignment at Contig_50:771302..772138-

>mRNA_8953 ID=mRNA_8953|Name=jgi.p|Trimin1|167423|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=642bp|location=Sequence derived from alignment at Contig_50:771302..772138- (Tribonema minus UTEX_B_3156 )
ATGGTTCACAAGTTCGCCGAAGCGCACCACCCACCAGCGCACCAGCCGGG
GCAAATATCGGCTGGGCCCCTGGGCCTGATGGCATTCGGCATGACCACCC
TGATGCTCATGTACGTCGAGGCGGGGTGGCTCGAGCCCGGCTTCGTGGAC
GTGGTCGTCTGCTACGCCATCTTCTTCGGCGGCGCGGCGCAGCTGCTCGC
CGGCATGTGGGAGATGGCGTGCGGCCGCACTTTCTCCGCGACCGCTTTCT
CCTCCTACGGCTGCTTCTGGCTCGGCTTCGGGATACTGCGCGTGCTCAAG
CAGCAGAGCCTGCACGACGGCGGTTTCGCGTGGGGCCCCAGCAGCGCCGG
CTTCGAGACGGGCGAGGCGCTGTTCCTCGCGCAGTGGGGCGTCATGTCGC
TGCTGTACTTCACGCTCACGTTCAAGAAGCCGCGCGCGCTGCAGTTCATC
TTCCTCACCGTCACCATCGCGTTCTTCCTGCTCGCCGGCGGCCACGCGAA
CCCCGGCTCCAAGGTCGCGCAAGACTCCAGGGTCGCGGGCGGCTACGTCG
GCCTGCTGTGCGCCGCCTCCGCGGTCTACCTGTCCATCGGGGAGATGCAG
TACGAGACGTACGGCATCAGGTGGCCCGGGTGCACGGTTTAG
back to top