mRNA_8944 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349868
Unique NamemRNA_8944
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: A0A835YU89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU89_9STRA)

HSP 1 Score: 676 bits (1743), Expect = 4.480e-241
Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 3 
Query:   57 MRMADKKSGDSGQSVKIGKLDPEEMREMSKAAIEAVTKAGVNAEEAARDIAVKIGEAGLDVATGNLGKNQPSLDDESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARAGGVPEVYVFEYTIKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRLFPHNVIVIAARGDDRFTLXXXXXXXXXXXXXXXXXLTAVAPQEQWERKRAQARRIADSFRLTQ 1436
            MRMADKKSGDSGQSVKIGKLDPEEMREMSKAAIEAVTKAGVNAEEAARDIAVKIGEAGLDVATGNLGKNQPSLDDESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARAGGVPEVYVFEYTIKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRLFPHNVIVIAARGDDRFTLXXXXXXXXXXXXXXXXXLTAVAPQEQWERKRAQARRIADSFRLTQ
Sbjct:    1 MRMADKKSGDSGQSVKIGKLDPEEMREMSKAAIEAVTKAGVNAEEAARDIAVKIGEAGLDVATGNLGKNQPSLDDESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARAGGVPEVYVFEYTIKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRLFPHNVIVIAARGDDRFTLXXXXXXXXXXXXXXXXXLTAVAPQEQWERKRAQARRIADSFRLTQ 460
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BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: D8LPY6_ECTSI (PsbP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY6_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 4.060e-38
Identity = 126/322 (39.13%), Postives = 165/322 (51.24%), Query Frame = 3 
Query:  126 EMREMSKAAIEAVTKAGVNAEEAARDIAVKIGEAGLDVATGNLGKNQ--PSLDDESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGA-APKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARA-GGVPEVYVFEYTIK 1079
            E++E+SKA  + + KA   + E   D A      G+D    N GK+      + E F V+TYFFGK+NE W+DM+ NGV   RF  Y+ L  AVA+GGNLFGVTSALLG+ AP+ +   ++D+L+P+ GFKR        S   G+EF+YP  W+ D                  +AL  Q +         +ED +R   A   R RQ R                        P  AFGP G  G     ENVSVV+S L  GFSL+ TLG P+ AA ++L   IAP GSGRE ELL A  + R  GG+  VY FEY ++
Sbjct:  192 EVKELSKARAK-LEKATAESTEMVLDSAAAALAKGIDKVV-NEGKDAIPEGEETEKFQVSTYFFGKENELWDDMRANGVTRERFVRYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFY------SPEDGYEFMYPDTWVGDSG----------------LALRRQRD---------LED-LRASPAAVARARQRRSSS--------------------APEVAFGPQGGDGI----ENVSVVKSELMPGFSLKRTLGDPKEAAEKILSTVIAPPGSGREWELLEAFEDNREPGGL--VYQFEYRVQ 453
[Close]
BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: A0A6H5KJV3_9PHAE (PsbP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV3_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.140e-37
Identity = 125/321 (38.94%), Postives = 161/321 (50.16%), Query Frame = 3 
Query:  126 EMREMSKAAIEAVTKAGVNAEEAARDIAVKIGEAGLDVATGNLGKNQPSLDD-ESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGA-APKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARA-GGVPEVYVFEYTIK 1079
            E++E+SKA  + + KA   + E   D A      G+D          P  ++ E F V+TYFFGK+NE W DM+ NGV   RF LY+ L  AVA+GGNLFGVTSALLG+ AP+ +   ++D+L+P+ GFKR        S   G+EF+YP  W+ D                  +AL  Q +         +ED +R   A   R RQ R                        P  AFGP G  G     ENVSVV+S L  GFSLR TLG P+ AA ++L   IAP  SGRE EL  A  + R  GG+  VY FEY I+
Sbjct:  288 EVKELSKARAK-LEKATAESTEMVLDSAAAALAKGIDKVVNEGRDAIPEGEETEKFQVSTYFFGKENELWNDMRANGVTRERFVLYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFY------SPEDGYEFIYPDTWVGDSG----------------LALRRQRD---------LED-LRASPAAVARARQRRSSS--------------------APEVAFGPQGGDGT----ENVSVVKSELMPGFSLRRTLGDPKEAAEKILSTVIAPPDSGREWELFEAFEDNREPGGL--VYQFEYRIQ 549
[Close]
BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: K8YRA7_NANGC (PsbP domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YRA7_NANGC)

HSP 1 Score: 132 bits (332), Expect = 8.710e-31
Identity = 102/264 (38.64%), Postives = 129/264 (48.86%), Query Frame = 3 
Query:  303 YFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLG--AAPKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARAGGVP----EVYVFEYTI 1076
            YFFG   EF ED+   G+  +R  L  G++  +A+G N  GVTSALL   + P+     +LDVLYPV+GFKR V+  +      G+EF YP  WL+DQA                + LA+   R   L  PS                        DR      +  R    A+ P AAFGPPG    G   EN+SV++S +  GFSL  TLG P AAA  LL  AIAP GSG+ A L+ A  E R GG      +VYVFEY +
Sbjct:  104 YFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTED------GYEFRYPQSWLSDQA----------------ILLADTQARTATLSSPSSPS---------------------DRPPRAPPSSTR----AVRPDAAFGPPG----GNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLV 316
[Close]
BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: A0A4D9CU31_9STRA (PsbP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU31_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.360e-30
Identity = 102/264 (38.64%), Postives = 129/264 (48.86%), Query Frame = 3 
Query:  303 YFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLG--AAPKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEAR-AGGVP---EVYVFEYTI 1076
            YFFG   EF ED+   G+  +R  L  G++  +A+G N  GVTSALL   + P+     +LDVLYPV+GFKR V+  +      G+EF YP  WL+DQA                V LA+   R   L  PS                        DR      +  R+    + P AAFGPPG    G   EN+SV++S +  GFSL  TLG P AAA  LL  AIAP GSG+ A L+ A  E R  GG     +VYVFEY +
Sbjct:    3 YFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDLKLDVLYPVRGFKRFVDTDD------GYEFRYPQSWLSDQA----------------VLLADTQARTATLSSPSSPS---------------------DRPPRAPPSSTRK----VRPDAAFGPPG----GNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVASLVMAQEETRDIGGKTLERKVYVFEYLV 215
[Close]
BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: A0A7S1HVX3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HVX3_9EUGL)

HSP 1 Score: 126 bits (317), Expect = 9.640e-30
Identity = 94/250 (37.60%), Postives = 122/250 (48.80%), Query Frame = 3 
Query:  282 ESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPK-LAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPG---ASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSA 1019
            E+ S++ Y FGK  EF  D++  G  PRR  L  G + A+A+GGN  GVTS LL   P+   + + LD  YPV+G KR        S+  G++FVYP EW+ADQA                VALA+Q   V+ LDP S                                  R+ R   ++P  AFGP G     G     ENVSV+ S +  GFSL+GTLG P+ AA+ LLD  +AP  SG+ A LL A
Sbjct:   62 EADSLSEYVFGKPGEFQRDLELVGTTPRRLLLGAGGATALALGGNFVGVTSGLLSLLPEDTIQATGLDQAYPVRGVKRY------RSDQLGYDFVYPQEWVADQA----------------VALAKQQLGVQSLDPASPR--------------------------------RKPRAPQVIPDCAFGPMGNLNRQGRNTTSENVSVIASDVMAGFSLQGTLGPPDKAAQVLLDTVLAPANSGKHATLLGA 257
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BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: A0A7S0U9Y0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U9Y0_HEMAN)

HSP 1 Score: 123 bits (308), Expect = 2.360e-28
Identity = 102/284 (35.92%), Postives = 127/284 (44.72%), Query Frame = 3 
Query:  240 ATGNLGKNQPSLDDESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPKLAERS----QLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARAGGVPEVYVFEYTIK 1079
            A G   K +   +D    +T Y FGK  EF  D+   G   RRFF    ++   A+GGN  GVTS LL   P          +L + YP+ G+KR V  G        +E +YP EWL DQA                V  A  A+          ED V                             R+R    +    AFGPP     G + ENVSVVRS +   FSLR TLG P+ AA+RLLD AIAP+ SG+EA L+ AVAE R  G  EVY FEY ++
Sbjct:    1 AAGESAKGEGGREDTPDPLT-YVFGKPGEFDRDLAMMGTSRRRFFTINIVALLFALGGNFLGVTSRLLSLVPDRQALYLLPVELTLFYPINGWKRYVGDG-------AYELIYPMEWLQDQA----------------VTFANTAK--------GSEDRVLA-------------------------MPRKRASPGVQTSVAFGPP----QGDSSENVSVVRSKVPSSFSLRDTLGVPQDAAQRLLDTAIAPKASGKEATLIRAVAEERGKG--EVYEFEYVVR 221
[Close]
BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: A0A2R6WGT5_MARPO (PsbP domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WGT5_MARPO)

HSP 1 Score: 120 bits (301), Expect = 1.140e-26
Identity = 89/242 (36.78%), Postives = 121/242 (50.00%), Query Frame = 3 
Query:  354 VQPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARAGGVPEVYVFEYTIK 1079
            +Q RRF+L T ++  VA+GGNL G+TSA+    P  +   + D+L+PVKGFKRC+        S GFEFVYP  W+ DQ                     E+AER R LD P ++                  G+RQ  Q    D           P+ AFGPPG  G      NVSVV + +  GFSL+  +G P+ A  R+L++ IAPEGS + A LL+A  + R+ G    Y  E+T+K
Sbjct:  115 LQTRRFWLGTSVATLVALGGNLGGLTSAIFNTNPDFSRSVRADLLFPVKGFKRCLET------SQGFEFVYPSNWVGDQRL--------------VYRAVERAERERSLDLPPIQ------------------GERQRNQRRSSD-----------PIVAFGPPGTEG----ELNVSVVVAPVFPGFSLQ-KIGGPQEAGERILNKFIAPEGSNKVATLLTA--QQRSDGSNLYYTLEFTVK 300
[Close]
BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: A0A2P6TG36_CHLSO (Glycolate oxidase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TG36_CHLSO)

HSP 1 Score: 122 bits (307), Expect = 3.930e-26
Identity = 96/244 (39.34%), Postives = 129/244 (52.87%), Query Frame = 3 
Query:  360 PRRFFLYTGLSA-AVAVGGNLFGVTSALLGA-APKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARAGGVPEVYVF-EYTIKA 1082
            P R  + +GL+A A+A+GGNLFGVTS LLG    +LAE S+LDVL PV GF+RC++        +GF FVYP  WLADQ                    AE+ ER   LDPPS+                                 R RR  A  P AA+GP G++G     EN+SVV + +  GF+L+  +G+PE AA+R LD  +APEGSGR A LL A +   A G  ++Y + E+T+++
Sbjct:  468 PARRLIVSGLTASAIALGGNLFGVTSWLLGLDGGRLAESSRLDVLVPVGGFRRCLDA------QNGFTFVYPARWLADQTLYRRY--------------AERIERQAALDPPSLA------------------------------RERTRRAAAPEPAAAYGPAGSTG----EENISVVVAPIRDGFTLQ-RMGSPEEAAQRFLDTTVAPEGSGRTARLLGAGSRRDANG--QLYYWQEFTVQS 654
[Close]
BLAST of jgi.p|Trimin1|349868 vs. uniprot
Match: A0A7S0T541_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T541_9RHOD)

HSP 1 Score: 114 bits (286), Expect = 4.950e-25
Identity = 93/253 (36.76%), Postives = 121/253 (47.83%), Query Frame = 3 
Query:  279 DESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPKLAERSQL-----DVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAV 1022
            +E  S+ TYF GK  E  +D++R G   RR     G +  +A+GGNLFG TS LL A       SQL     D ++PV+G KR V  G        FEFVYP  WL D A                V    Q + +++LD   +                           +  +    R GR +VP+ AFGPPG  G+    ENVSV++S +  GFS+ GTLG    AA  LL ++IAP GSG+ AELLSAV
Sbjct:   33 EEDRSLKTYFLGKPGELDQDLKRLGTSRRRILGAFGAAVVLALGGNLFGGTSILLSA---FLSDSQLQVFKADTVFPVRGRKRFVEDGL-------FEFVYPKAWLRDPA----------------VEYFRQQQNIKKLDLTML---------------------------NAPERSGSRAGR-IVPVVAFGPPGGDGS----ENVSVIQSEVLPGFSMLGTLGDARNAAETLLRQSIAPTGSGKTAELLSAV 227
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349868 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU89_9STRA4.480e-241100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LPY6_ECTSI4.060e-3839.13PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KJV3_9PHAE3.140e-3738.94PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
K8YRA7_NANGC8.710e-3138.64PsbP domain-containing protein n=2 Tax=Nannochloro... [more]
A0A4D9CU31_9STRA1.360e-3038.64PsbP domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S1HVX3_9EUGL9.640e-3037.60Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S0U9Y0_HEMAN2.360e-2835.92Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A2R6WGT5_MARPO1.140e-2636.78PsbP domain-containing protein n=1 Tax=Marchantia ... [more]
A0A2P6TG36_CHLSO3.930e-2639.34Glycolate oxidase n=1 Tax=Chlorella sorokiniana Ta... [more]
A0A7S0T541_9RHOD4.950e-2536.76Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_50contigContig_50:712628..718148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349868|estExt_Genemark1.C_Ctg_500083
BiGG ReactioniRC1080.CRv4_Au5_s2_g9294_t1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
Preferred namePSBP5
DescriptionPsbP domain-containing protein 7 chloroplastic
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28JMB@1|root,2QS0I@2759|Eukaryota
Evalue4.72e-39
Seed ortholog2880.D8LPY6
Hectar predicted targeting categoryother localisation
TranscriptId350190
TrackFilteredModels1
ProteinId349868
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349868gene_8944Tribonema minus UTEX_B_3156 geneContig_50 712628..718148 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8944_1exon_8944_1Tribonema minus UTEX_B_3156 exonContig_50 712628..712818 +
exon_8944_2exon_8944_2Tribonema minus UTEX_B_3156 exonContig_50 712912..712954 +
exon_8944_3exon_8944_3Tribonema minus UTEX_B_3156 exonContig_50 713050..713141 +
exon_8944_4exon_8944_4Tribonema minus UTEX_B_3156 exonContig_50 713490..713708 +
exon_8944_5exon_8944_5Tribonema minus UTEX_B_3156 exonContig_50 714053..714100 +
exon_8944_6exon_8944_6Tribonema minus UTEX_B_3156 exonContig_50 714281..714378 +
exon_8944_7exon_8944_7Tribonema minus UTEX_B_3156 exonContig_50 715397..715414 +
exon_8944_8exon_8944_8Tribonema minus UTEX_B_3156 exonContig_50 715521..715589 +
exon_8944_9exon_8944_9Tribonema minus UTEX_B_3156 exonContig_50 716240..716540 +
exon_8944_10exon_8944_10Tribonema minus UTEX_B_3156 exonContig_50 716604..716681 +
exon_8944_11exon_8944_11Tribonema minus UTEX_B_3156 exonContig_50 716812..716889 +
exon_8944_12exon_8944_12Tribonema minus UTEX_B_3156 exonContig_50 717492..717553 +
exon_8944_13exon_8944_13Tribonema minus UTEX_B_3156 exonContig_50 718007..718148 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_8944UTR5_8944Tribonema minus UTEX_B_3156 five_prime_UTRContig_50 712628..712683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8944CDS_8944Tribonema minus UTEX_B_3156 CDSContig_50 712684..712818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349868Trimin1|349868|estExt_Genemark1.C_Ctg_500083Tribonema minus UTEX_B_3156 polypeptideContig_50 712684..718148 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8944 ID=mRNA_8944|Name=jgi.p|Trimin1|349868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1439bp|location=Sequence derived from alignment at Contig_50:712628..718148+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCAATCATATATCTTTGGCACAACACCTGCAGCATCATCGCGAAGACGC
ACATGGATGCGCATGGCCGACAAGAAATCGGGAGACAGCGGCCAATCCGT
TAAGATAGGCAAACTCGACCCTGAGGAGATGCGGGAGATGAGCAAAGCGG
CCATCGAAGCTGTGACAAAGGCTGGTGTAAACGCAGAAGAGGCCGCCAGA
GACATCGCAGTGAAGATCGGAGAGGCAGGGCTAGATGTTGCAACTGGCAA
CCTAGGCAAGAACCAGCCAAGCCTCGATGACGAGAGCTTCAGCGTCACAA
CATACTTCTTCGGCAAGGACAACGAGTTCTGGGAGGACATGCAGCGAAAC
GGCGTACAGCCGAGGCGCTTCTTCCTCTACACCGGCCTCAGCGCGGCGGT
GGCGGTGGGCGGCAATCTGTTCGGCGTCACGTCGGCGCTGCTAGGCGCAG
CTCCGAAGTTGGCGGAGCGCTCCCAGCTGGACGTGCTGTACCCGGTGAAG
GGCTTCAAGCGCTGCGTCAACAAAGGCGAGTCTGAATCCGAGTCTCACGG
CTTTGAGTTTGTGTACCCCCACGAGTGGCTGGCGGACCAGGCGCACGGCT
TTGAGTTTGTGTACCCCCAGGAATGGCTGGCGGACCAGGCGGTGGCGCTG
GCGGAACAGGCGGAGAGGGTGCGGCAGCTGGACCCCCCCAGCGTGGAGGA
CGCGGTGCGCGTGGAGGACGCAGTGCGGCGGCGCCAGAGGCAAGTGCGCG
GCGGCAAGCGACAGGACCGTCAGTCGCACGTGGAGGACGCGGTGCGGCGC
CGCCGCGGCCGCGCGCTCGTCCCGCTCGCCGCCTTCGGCCCGCCGGGCGC
GAGCGGCGCCGGCGCTGCACGCGAGAACGTCAGTGTCGTGCGCAGCGCGC
TCGAGCGCGGCTTCAGCCTTCGCGGCACGCTCGGCGCGCCTGAGGCGGCG
GCGCGGCGGCTGCTTGACGAGGCGATAGCGCCGGAGGGGTCGGGGCGCGA
GGCGGAGCTGCTGAGCGCTGTTGCGGAGGCGCGCGCGGGGGGCGTGCCTG
AGGTGTACGTGTTCGAGTACACGATCAAGGCGGAGCTGCTGAGCGCTGTG
GCGGAGGCGCGCGCAGGGGGCGCGCCTGAGGTGTACGTGTTTGAGTACAC
GATCAAGGTGGAGCTGCTGAGCGCTGTGGCGGAGGCGCGCGCGGGCGGCG
CGCCTGAGGTGTACGCATCTGAATACACCATCAAGTCGAGCCGGCTGTTT
CCGCACAACGTTATCGTCATCGCGGCACGCGGCGATGACCGCTTTACGTT
GTTCCTGCACAACATCTGCGTCATCGCGGCGCGCGGCGACGAGCTCTTCA
CGCTCACCGCGGTCGCGCCGCAGGAGCAGTGGGAGCGCAAGCGCGCGCAG
GCGCGGAGGATCGCCGACAGCTTCCGGCTCACGCAGTGA
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protein sequence of jgi.p|Trimin1|349868

>Trimin1|349868|estExt_Genemark1.C_Ctg_500083 ID=Trimin1|349868|estExt_Genemark1.C_Ctg_500083|Name=jgi.p|Trimin1|349868|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=461bp
MRMADKKSGDSGQSVKIGKLDPEEMREMSKAAIEAVTKAGVNAEEAARDI
AVKIGEAGLDVATGNLGKNQPSLDDESFSVTTYFFGKDNEFWEDMQRNGV
QPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPKLAERSQLDVLYPVKGF
KRCVNKGESESESHGFEFVYPHEWLADQAHGFEFVYPQEWLADQAVALAE
QAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRR
GRALVPLAAFGPPGASGAGAARENVSVVRSALERGFSLRGTLGAPEAAAR
RLLDEAIAPEGSGREAELLSAVAEARAGGVPEVYVFEYTIKAELLSAVAE
ARAGGAPEVYVFEYTIKVELLSAVAEARAGGAPEVYASEYTIKSSRLFPH
NVIVIAARGDDRFTLFLHNICVIAARGDELFTLTAVAPQEQWERKRAQAR
RIADSFRLTQ*
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mRNA from alignment at Contig_50:712628..718148+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8944 ID=mRNA_8944|Name=jgi.p|Trimin1|349868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5521bp|location=Sequence derived from alignment at Contig_50:712628..718148+ (Tribonema minus UTEX_B_3156 )
CCCAATCATATATCTTTGGCACAACACCTGCAGCATCATCGCGAAGACGC
ACATGGATGCGCATGGCCGACAAGAAATCGGGAGACAGCGGCCAATCCGT
TAAGATAGGCAAACTCGACCCTGAGGAGATGCGGGAGATGAGCAAAGCGG
CCATCGAAGCTGTGACAAAGGCTGGTGTAAACGCAGAAGAGGTGAGAGAG
CTGTCCTTGGTTCCACTCACCCTGCAGCACTGAGCTCTCACTAACATCAC
TGTTGTTGTCGTTGCCGTGTGATGGACGCTGCAGGCCGCCAGAGACATCG
CAGTGAAGATCGGAGAGGCAGGGCTAGGTGAGAATCGGGACGACAATTGG
TTCAATGCTGTTCAGAGCGTGTTGCATGCCGCTGACATCGACCTTATGCC
CTGCTGTTTGTTGCATTGGCAGATGTTGCAACTGGCAACCTAGGCAAGAA
CCAGCCAAGCCTCGATGACGAGAGCTTCAGCGTCACAACATACTTCTTCG
GCAAGGACAACGAGGTGATAGTGCCCTGGTGCCCCTATACGCTGCGTGCC
GTTTGTGTGCCGCTTTTGAAGGTTCGCCTCTGTAGTAGTGATGCATGCAT
TTGGTATGCAGCGCCCGTATCGTGCTGCCATCTTGCTGCGCGCAGGCTTT
CACACAACTACGTGTTGCGTGCCAAGCAACAAGCAGGTCGGGCAGTCCGC
TTCTTTCAAACTCTGTCGGCATCTGCCGTCACGTGTACAATGGCAGAACT
GTTGCAAGAGACGCTGCTCGTTCTCTGCTCGCCAAAAGCGCAGACTGAAA
ACAGGCGCCACTCCTATTGTGCTGACCCTCGCCTCCTCGCTGACGCACGC
AAACGAAATCAGTTCTGGGAGGACATGCAGCGAAACGGCGTACAGCCGAG
GCGCTTCTTCCTCTACACCGGCCTCAGCGCGGCGGTGGCGGTGGGCGGCA
ATCTGTTCGGCGTCACGTCGGCGCTGCTAGGCGCAGCTCCGAAGTTGGCG
GAGCGCTCCCAGCTGGACGTGCTGTACCCGGTGAAGGGCTTCAAGCGCTG
CGTCAACAAAGGCGAGTCTGAATCCGAGTCTGTGAGTCTAAGCCTGAGCG
ATGCGGCGGCACGCGTCAGTGCGCAGCACGGAGTCGATGCGCCACCGGCA
GAGTGTTTCATCGCTCACCGCGTGCGCCCGCCGGGTGCAGCGCCAGTGCT
GATGATGACACGACGCAGTGCCAGCGACAGTGCGTCACCAAGATAGTGGG
TTTCATTGTGTACCAATGGGGGTTGCCCTAACCCTAACCCCAACCTTAAG
GGCTGCGCCCGCCTGCGTCTTGAGATTCATGGGGTAGTGCAACCCCTGCC
CTTGTGGAAGCAATCTTAAGCAGCAGTGCTCAACCCCTGTCGTCCCCCGG
CTGCGTGCCTGTCCCCTGCACAGAGCACGGCTTTGAGTTTGTGTACCCCC
ACGAGTGGCTGGCGGACCAGGCGGTGGCACAGCAGCGCTCAGCTCGCCTC
ATAAGGCTGCTTTCTGGATGCTTCAGCCCCTGCCCCTCTCAACCACATTA
CCTCGCAACGGTCAACGCCCGTGGTTTTCTTGGCCCCTTGACCCTCATCA
CACATGTGCAGTGCTCAACTCTCAAACCCTCCCCGCGCTCGTCCCCTGCA
GAGCACGGCTTTGAGTTTGTGTACCCCCAGGAATGGCTGGCGGACCAGGC
GGTGGCGCTGGCGGAACAGGCGGAGAGGGTGCGGCAGCTGGACCCCCCCA
GGTGAGGCTTCAACCCTAACCCTAATCCTAACCCTATGGTATCCCCAACA
CTGCGCAGGTGAACAACACTACGCAACTGAGGGTGTTCTTCAACCTCCAG
TTCAGTCCCAAGCCCAACTGTAGCTTCAGTCCTAGCCCTGGGTGAACGCA
CGCTGTCGTGGCCTCTCTCGGTGAGGGCGCTCGCGAAGCAGGCTGAGAGG
GTATGGCAGCTAGACCCCAGGCGACAGTTACTTTTGTGCAATGTAGAGAG
CTGCTGCTCACAAGCCGGTGTTGCTCCACACCGACAGAGGTAGACATCAA
GTTGGCCAATGCAACGGAAAACGGACGCCAGAGTCATGTACTGCTCGAAG
TGAATGTATTGTGGCCTGTCTACTGGGAGATGTAACTGCCATAACCGTCA
AGCGTGCCAACGGCAATGAGCATGTAACTGCCATATGCTCCGTCGAATTC
AACCTCCAAGACCTGACTGAAGCTTCATCCCTAGCCCTAGGTGAGCGCAC
AGTGCCGTGACCTGTCTCTGCAAGTACCAACCAGTCCTATGCGTAACCCT
AGTTCCAACCTTACCTCCAGGGAGCGCCCGCTGCTGTGACCTTTGCTCGG
CCAAACCTTGATGCATTTGCGACTTTAAGCCCACCAGGTAGGTGGGGGTT
AGGGTTACGGCCAAACCTAGTGACTGTCCAGGAAAGCCGATTGCAAGCGC
AGTCTGGGCCAGATGACATGAAGGTCTCCTCTCGTACTCCAAACCTGTCC
CAAACCCCAGTGGCCATTGCGTGGAACCTGCGACGGCGCGCACATCATTC
GCCTCTGAAGTATACCACTTCCTCACAATGCGCGTCGCACCGTGGGCGAC
GCGGTGCGGCGGCGCTGAGGCATTGCGCGGCAGCAGGCGACGCAGCCGTG
AGTTGCACTGCATAGAAGTACAACATATCAGCGGCAGCCCCTCGGCAGCA
CGCCACCGCATAGACCCTGTGTGCCACCACTTATCTCATTGAGTACATGT
TGTCGCCGCGCATGCGCAGCGTGGAGGACGCGGTGCGGTGCCGCCGCTCA
AATCCAGTAGCAATACGCCATCTCATAAAGCCCATGCCGGCACGTATTAC
TCCCCTCTGAAGTCCAACACTCCATCGCATTGCGCATCTGCAGCGTGGAG
GACGCAGTGCGGCGGCGCCAGAGGCAAGTGCGCGGCGGCAAGCGACAGGA
CCGTCAGTCGCAGTGCGCATATCACAGGAGTAGCAGCCCGCTGGCGGCAC
GCCGCCGTATAAACCCCGCGCTAACCCGTATCTCATCCACGACACCCCAT
CGCCGTGCATGCGCAGCGTGCAGGACGCGGTGCGGCGCCGCCGCTCAAAT
CCAGTAGCAGTACGCCATCTCATAGAGCCTATGCCAGCACGTATCACTCC
CCTCTGAAGCTCAACACTTCTTCGCAACGTGCATCGCAACGTGGACAACG
CGGTGCGGCGGCGCCGCAGGGACAGTCAGTTGCAGTGCGTACATCATATT
GGCAGCAGCCCCCCTGGCAGTACGCCGCCGCATAGACCCCGCGCTAGCCC
GCATCTGATCCACGACACCCCATCGCCGCGCATGCGCAGCGTGGAGGACA
CAGTGCGGCGCCGCCGCTCAAATCCAGTAGCAGTACGCCATCTCATAGAG
CCTAGGCCAGCACGTATCACTCCTTTCTGAAGCCCAACACTTCTTCGCAA
CGTGTATCGCAACGTGGACAACGTGGTGCGGCGGCGCCGCAGGGACAGTC
AGTTGCACTGCGTACATCATATCGGCAGCAGCCCCCCTGGCAGTACGCCA
CCGCATAGACCCCGCGCCACTACTCATCTCATCGAATACACGTTATTGCC
ACGCATGCGCAGCGTGGAGGACGCGGTGCGGCGCCGCCGCGGCCGCGCGC
TCGTCCCGCTCGCCGCCTTCGGCCCGCCGGGCGCGAGCGGCGCCGGCGCT
GCACGCGAGAACGTCAGTGTCGTGCGCAGCGCGCTCGAGCGCGGCTTCAG
CCTTCGCGGCACGCTCGGCGCGCCTGAGGCGGCGGCGCGGCGGCTGCTTG
ACGAGGCGATAGCGCCGGAGGGGTCGGGGCGCGAGGCGGAGCTGCTGAGC
GCTGTTGCGGAGGCGCGCGCGGGGGGCGTGCCTGAGGTGTACGTGTTCGA
GTACACGATCAAGGTGCGTGGGGGTATGGCGCGATCATGTATTGATTGAT
GTGTATGACCTGCTGATGAAGTTGAGGCGGAGCTGCTGAGCGCTGTGGCG
GAGGCGCGCGCAGGGGGCGCGCCTGAGGTGTACGTGTTTGAGTACACGAT
CAAGGTGCGCGGGGGTGTGTGTGTATGCGCGGGCCTAGGCGCGCACGTGT
GTTTGACTGCGCGTGCGCGTGTTGTGACTGTGTGTTGTACGCTATGGCGA
CGCGAATGTACTTCAAGACTGACCTATTTATGAGGTGGAGCTGCTGAGCG
CTGTGGCGGAGGCGCGCGCGGGCGGCGCGCCTGAGGTGTACGCATCTGAA
TACACCATCAAGGTGCGTGGGGGCGCCGCGGGTGTCAGCCTCTGTGTGTG
CGTGTTGGTGTGGACGTCTTGACTGTTGGTACGCAGTGGCAGTGAGTCGA
GGCATTAATGTATGACCTACTGATGAATTTGAGGCGGAGCTGTTGAGCAC
TGTGGCGGAGCCGCGCGCGGGCGGCGCGCGCGCGAGGTGTACGTGTTTGA
GTACTGGTCAAGGTGCGCGCGGTGTGCGCAGTGTGAGTGAGTGTGTGTGT
GTGTATGTGTTGCGTCGGTTGGCGCGCAGTGGCAGCAGGACGGATCTGGC
GTGAACGCATGGCGTGCTGATGTGACAAATCAAGAGTTGGACTGGACGAG
GCTGCGTCGCCTCAAGTGCTGTGTTGCGGAGCGCTGCTGCGGAGGCGTGC
GAGAGGCGCACGCTAGAGGCTTGCTGGTTTCTTTACAAACTCAGCTTAAT
CTCATGGGCGTTGTCACCATCGCGCAGTTCAGTACGCCTACAGGACGGCA
GCCTTTTGAGATAATGAAGATGTGCATTCAATTCTCGTCACCGCTCCTGA
GGGTTCAGGTTAGCATAATAACGCCCGCACAATCGCACCTCACCCCCTGC
CACTTCCCCCGCAGTCGAGCCGGCTGTTTCCGCACAACGTTATCGTCATC
GCGGCACGCGGCGATGACCGCTTTACGTTCGACCGCGGTTCACACTGCAG
AAGCCTCCCCAAGTGCTCAAACGCTCAACAATCAACTGCGACGTATCTTC
AGTCATTCCCGTAGACAAGCAGGTTGTTCCTACGCGACGTCTTCGTCATC
ACAGCCCACTGCGCCCCTCCTGACGACCTGTTCTGTGCCGACTGCCTAAC
CTCAACTGTGCGACCAACCTCAAGTGTGTGACGTGCTCCCTGCAGACGAG
CAGGCTCTTCCTGCACACCATGTGCGTCATCGCGGCTTGCTGTGTCCCTC
CTGAAAACCTGTCCTGTGCCGACTTTTCAACCTCAACTATGTGATGTGTC
CCTTGTCATCCCCGCAGACGAGCAGACTCTTCCTGCACAACATCTGCGTC
ATCGCGGCTCGCTGTGTTCCTCCCACTTGCTCTTGTGCTCAACCTCAACT
GTGTGACGTGCTCCCCTGCAGACTAGCAGGTTGTTCCTGCACAACATCTG
CGTCATCGCGGCGCGCGGCGACGAGCTCTTCACGCTCACCGCGGTCGCGC
CGCAGGAGCAGTGGGAGCGCAAGCGCGCGCAGGCGCGGAGGATCGCCGAC
AGCTTCCGGCTCACGCAGTGA
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Coding sequence (CDS) from alignment at Contig_50:712628..718148+

>mRNA_8944 ID=mRNA_8944|Name=jgi.p|Trimin1|349868|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1383bp|location=Sequence derived from alignment at Contig_50:712628..718148+ (Tribonema minus UTEX_B_3156 )
ATGCGCATGGCCGACAAGAAATCGGGAGACAGCGGCCAATCCGTTAAGAT
AGGCAAACTCGACCCTGAGGAGATGCGGGAGATGAGCAAAGCGGCCATCG
AAGCTGTGACAAAGGCTGGTGTAAACGCAGAAGAGGCCGCCAGAGACATC
GCAGTGAAGATCGGAGAGGCAGGGCTAGATGTTGCAACTGGCAACCTAGG
CAAGAACCAGCCAAGCCTCGATGACGAGAGCTTCAGCGTCACAACATACT
TCTTCGGCAAGGACAACGAGTTCTGGGAGGACATGCAGCGAAACGGCGTA
CAGCCGAGGCGCTTCTTCCTCTACACCGGCCTCAGCGCGGCGGTGGCGGT
GGGCGGCAATCTGTTCGGCGTCACGTCGGCGCTGCTAGGCGCAGCTCCGA
AGTTGGCGGAGCGCTCCCAGCTGGACGTGCTGTACCCGGTGAAGGGCTTC
AAGCGCTGCGTCAACAAAGGCGAGTCTGAATCCGAGTCTCACGGCTTTGA
GTTTGTGTACCCCCACGAGTGGCTGGCGGACCAGGCGCACGGCTTTGAGT
TTGTGTACCCCCAGGAATGGCTGGCGGACCAGGCGGTGGCGCTGGCGGAA
CAGGCGGAGAGGGTGCGGCAGCTGGACCCCCCCAGCGTGGAGGACGCGGT
GCGCGTGGAGGACGCAGTGCGGCGGCGCCAGAGGCAAGTGCGCGGCGGCA
AGCGACAGGACCGTCAGTCGCACGTGGAGGACGCGGTGCGGCGCCGCCGC
GGCCGCGCGCTCGTCCCGCTCGCCGCCTTCGGCCCGCCGGGCGCGAGCGG
CGCCGGCGCTGCACGCGAGAACGTCAGTGTCGTGCGCAGCGCGCTCGAGC
GCGGCTTCAGCCTTCGCGGCACGCTCGGCGCGCCTGAGGCGGCGGCGCGG
CGGCTGCTTGACGAGGCGATAGCGCCGGAGGGGTCGGGGCGCGAGGCGGA
GCTGCTGAGCGCTGTTGCGGAGGCGCGCGCGGGGGGCGTGCCTGAGGTGT
ACGTGTTCGAGTACACGATCAAGGCGGAGCTGCTGAGCGCTGTGGCGGAG
GCGCGCGCAGGGGGCGCGCCTGAGGTGTACGTGTTTGAGTACACGATCAA
GGTGGAGCTGCTGAGCGCTGTGGCGGAGGCGCGCGCGGGCGGCGCGCCTG
AGGTGTACGCATCTGAATACACCATCAAGTCGAGCCGGCTGTTTCCGCAC
AACGTTATCGTCATCGCGGCACGCGGCGATGACCGCTTTACGTTGTTCCT
GCACAACATCTGCGTCATCGCGGCGCGCGGCGACGAGCTCTTCACGCTCA
CCGCGGTCGCGCCGCAGGAGCAGTGGGAGCGCAAGCGCGCGCAGGCGCGG
AGGATCGCCGACAGCTTCCGGCTCACGCAGTGA
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