mRNA_8929 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349859
Unique NamemRNA_8929
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349859 vs. uniprot
Match: A0A835YTA4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA4_9STRA)

HSP 1 Score: 429 bits (1104), Expect = 1.790e-149
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1 
Query:    1 MLAFAAARDSSSSKRHIKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQSWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQRARDALIQLYESVGMTGGGARWQRRRHFGKKSGTARGEVGTPLDNDDSIHWACECSPDIEHVGAADANVHWRSFDSEAASEENKGKLILPKHHDKKTGCTKSVHPTRPEELPADLRTEDKWIRYFAASAALGAYKTKMSLGR 726
            MLAFAAARDSSSSKRHIKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQSWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQRARDALIQLYESVGMTGGGARWQRRRHFGKKSGTARGEVGTPLDNDDSIHWACECSPDIEHVGAADANVHWRSFDSEAASEENKGKLILPKHHDKKTGCTKSVHPTRPEELPADLRTEDKWIRYFAASAALGAYKTKMSLGR
Sbjct:    1 MLAFAAARDSSSSKRHIKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQSWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQRARDALIQLYESVGMTGGGARWQRRRHFGKKSGTARGEVGTPLDNDDSIHWACECSPDIEHVGAADANVHWRSFDSEAASEENKGKLILPKHHDKKTGCTKSVHPTRPEELPADLRTEDKWIRYFAASAALGAYKTKMSLGR 242
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BLAST of jgi.p|Trimin1|349859 vs. uniprot
Match: A0A836CK79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK79_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.020e-33
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    1 MLAFAAARDSSSSKRHIKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQSWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQRARDAL 318
            MLAFAAARDSSSSKRH+KLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQ+WEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQ ARDAL
Sbjct:    1 MLAFAAARDSSSSKRHLKLSTRLQQSLIADPTTPAPRPXXXXXXXXXXXXXXXXXXXXXXXLIQNWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQHARDAL 106
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BLAST of jgi.p|Trimin1|349859 vs. uniprot
Match: A0A835YS48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS48_9STRA)

HSP 1 Score: 389 bits (999), Expect = 1.040e-135
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1 
Query:    1 MAQVQRQRRARTEAAGVGGEAENGWTHEPGSWRKLGAFSIAKLLISLGLDLAYSRGRLPLGGWGRALALWQLYRERLPVLLSAVCPTWVPLLSIVWLFKVRARTFEEDRGEPRGSYLGHLLPIKTMVLSGPPFAPDAGGATGPMGGTSRGGAEERRAQARPGEILGFDVSNIADGEVVELSSMAGTAGTAQRRHR 585
            MAQVQRQRRARTEAAGVGGEAENGWTHEPGSWRKLGAFSIAKLLISLGLDLAYSRGRLPLGGWGRALALWQLYRERLPVLLSAVCPTWVPLLSIVWLFKVRARTFEEDRGEPRGSYLGHLLPIKTMVLSGPPFAPDAGGATGPMGGTSRGGAEERRAQARPGEILGFDVSNIADGEVVELSSMAGTAGTAQRRHR
Sbjct:    1 MAQVQRQRRARTEAAGVGGEAENGWTHEPGSWRKLGAFSIAKLLISLGLDLAYSRGRLPLGGWGRALALWQLYRERLPVLLSAVCPTWVPLLSIVWLFKVRARTFEEDRGEPRGSYLGHLLPIKTMVLSGPPFAPDAGGATGPMGGTSRGGAEERRAQARPGEILGFDVSNIADGEVVELSSMAGTAGTAQRRHR 195
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349859 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YTA4_9STRA1.790e-149100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CK79_9STRA1.020e-3397.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|349859 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YS48_9STRA1.040e-135100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_50contigContig_50:560658..562420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349859|estExt_Genemark1.C_Ctg_500068
Hectar predicted targeting categorymitochondrion
TranscriptId350181
TrackFilteredModels1
ProteinId349859
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349859gene_8929Tribonema minus UTEX_B_3156 geneContig_50 560658..562420 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8929_1exon_8929_1Tribonema minus UTEX_B_3156 exonContig_50 560658..560843 +
exon_8929_2exon_8929_2Tribonema minus UTEX_B_3156 exonContig_50 561185..561383 +
exon_8929_3exon_8929_3Tribonema minus UTEX_B_3156 exonContig_50 561759..562420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8929CDS_8929Tribonema minus UTEX_B_3156 CDSContig_50 560658..560843 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8929UTR3_8929Tribonema minus UTEX_B_3156 three_prime_UTRContig_50 562103..562420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349859Trimin1|349859|estExt_Genemark1.C_Ctg_500068Tribonema minus UTEX_B_3156 polypeptideContig_50 560658..562102 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8929 ID=mRNA_8929|Name=jgi.p|Trimin1|349859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1047bp|location=Sequence derived from alignment at Contig_50:560658..562420+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCCTTCGCCGCAGCCCGCGACAGCAGCAGCAGCAAGCGGCACAT
TAAGCTTTCGACCAGGCTGCAGCAATCCCTCATCGCCGACCCAACCACGC
CAGCGCCCCGTCCGCCGCGGGCGAAGAAGGCCAGAGTGGCGGCGTCGAGT
TCTGCGGCTGCAGATGCTGGGGAGCTCGGAGAGCTGATACAGAGCTGGGA
GCCTGATGCAGAGGCTTCACTGCGACACATCGAAGCCAGTGGCGCCGTCT
CCGCAGAACAGCGCCGAGCACAGATCATCAGCCAGATCTCATGCGACCAG
CGCGCCCGAGACGCCCTCATACAATTGTATGAGAGCGTGGGCATGACTGG
CGGTGGCGCGCGGTGGCAGCGGCGGCGGCACTTTGGGAAGAAGAGCGGCA
CGGCAAGGGGCGAGGTGGGCACGCCATTGGACAATGATGACAGCATCCAC
TGGGCGTGCGAGTGCTCCCCCGACATAGAGCATGTGGGGGCCGCAGACGC
GAACGTGCACTGGCGCAGTTTTGACTCCGAGGCGGCCAGCGAGGAGAACA
AGGGCAAGCTCATTCTCCCTAAACACCACGACAAGAAAACTGGCTGCACC
AAGTCTGTGCATCCTACGCGTCCCGAGGAGTTGCCTGCAGACCTGCGCAC
TGAAGACAAGTGGATCAGGTACTTTGCCGCCTCTGCGGCGCTTGGTGCGT
ACAAGACTAAGATGTCGCTTGGCAGGTAGAGGCGTACGCCAACTTCAGAG
GCGGAGTCAGGTTTGACCAAGGGGGTCTAGGAGGGGCGAGACCCCCTTGC
TTTGACAGGACGGGTGATGTGGGTGGGTTCACGGCCATGCAGTAAGGAAG
TATCAAAATATGACAGTGGGTGTTGGCAGACTTCGGTTTGGAGAATGACA
GTGGTGGTTGACTGATGGTACAACGGAGTATTCCCTTTTTTGGGCTTCAA
GATCGGTGCGGGATGATGTGTCTGCAACACATCACATGAGACACGTGGTT
GCAAGCACGTCCGAATCCGGCGATAAGCATCATTTCCGACAAATGAA
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protein sequence of jgi.p|Trimin1|349859

>Trimin1|349859|estExt_Genemark1.C_Ctg_500068 ID=Trimin1|349859|estExt_Genemark1.C_Ctg_500068|Name=jgi.p|Trimin1|349859|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp
MLAFAAARDSSSSKRHIKLSTRLQQSLIADPTTPAPRPPRAKKARVAASS
SAAADAGELGELIQSWEPDAEASLRHIEASGAVSAEQRRAQIISQISCDQ
RARDALIQLYESVGMTGGGARWQRRRHFGKKSGTARGEVGTPLDNDDSIH
WACECSPDIEHVGAADANVHWRSFDSEAASEENKGKLILPKHHDKKTGCT
KSVHPTRPEELPADLRTEDKWIRYFAASAALGAYKTKMSLGR*
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mRNA from alignment at Contig_50:560658..562420+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8929 ID=mRNA_8929|Name=jgi.p|Trimin1|349859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1763bp|location=Sequence derived from alignment at Contig_50:560658..562420+ (Tribonema minus UTEX_B_3156 )
ATGCTTGCCTTCGCCGCAGCCCGCGACAGCAGCAGCAGCAAGCGGCACAT
TAAGCTTTCGACCAGGCTGCAGCAATCCCTCATCGCCGACCCAACCACGC
CAGCGCCCCGTCCGCCGCGGGCGAAGAAGGCCAGAGTGGCGGCGTCGAGT
TCTGCGGCTGCAGATGCTGGGGAGCTCGGAGAGCTGGTGAGTTGCATGAA
CGGCTTGATTGCTGATGCTAGCTGCTGCAAGCCAGTTTTGCCAACTGTGC
CCTCTTCTTGCTGGACGATGCGGCGCCGTCCACTGCTACAAAGCCTCTAT
ATACTTGAATCATCGATGTGTGAACAAAAAAGCTGATGACATGTACATTC
GCGACAGCAGCTTCTCTGTGGATTTCATTCGGGCATGTGCATGTGTGTTA
GTCATGTCCTAATACATCCGATAATGTCTCATCCCGGCCATATGACACTG
ACTGCACATTGCTCTGCTGCGTGTACATTTTGCAGTGCCAACAGGCAGAC
CAGCACCTGCCACCGGAAGTGTGGCAGATACAGAGCTGGGAGCCTGATGC
AGAGGCTTCACTGCGACACATCGAAGCCAGTGGCGCCGTCTCCGCAGAAC
AGCGCCGAGCACAGATCATCAGCCAGATCTCATGCGACCAGCGCGCCCGA
GACGCCCTCATACAATTGTATGAGAGCGTGGGCATGACTGGCGGTGGCGC
GCGGTGGCAGCGGCGGCGGCACTTTGGTGCGTGCGCACAGCTCAGCGGCG
ACATTTACCGCCTTGCGTTTACGCAACCAATTGAAGATGGCGCAGACAGA
GTCGCACCATAGGAACCTAAGTGACTAGTTGAGTTTACATACTGTGGCCT
ACACTACGCTGGCCGCCCAATGAGCTCTTGTGTTAATGACTGATCAACAG
CAGCAGCGGGCGCGAGTTGTTGCAACATATGCAGTTGATTCTGTACTGCT
CTGGCATACATACATTCGCAAGCACTTGAGGTTGACATGCCTTTTGCTGC
ATTTTGGGTCACTGCGTGAGGCATAATAGTGACAGTCATTGTGACGGGGT
CATAAAAGCTCTAGCATTGCCTGACTTGTTGTTGCTTACTGTGCCATGCA
GGGAAGAAGAGCGGCACGGCAAGGGGCGAGGTGGGCACGCCATTGGACAA
TGATGACAGCATCCACTGGGCGTGCGAGTGCTCCCCCGACATAGAGCATG
TGGGGGCCGCAGACGCGAACGTGCACTGGCGCAGTTTTGACTCCGAGGCG
GCCAGCGAGGAGAACAAGGGCAAGCTCATTCTCCCTAAACACCACGACAA
GAAAACTGGCTGCACCAAGTCTGTGCATCCTACGCGTCCCGAGGAGTTGC
CTGCAGACCTGCGCACTGAAGACAAGTGGATCAGGTACTTTGCCGCCTCT
GCGGCGCTTGGTGCGTACAAGACTAAGATGTCGCTTGGCAGGTAGAGGCG
TACGCCAACTTCAGAGGCGGAGTCAGGTTTGACCAAGGGGGTCTAGGAGG
GGCGAGACCCCCTTGCTTTGACAGGACGGGTGATGTGGGTGGGTTCACGG
CCATGCAGTAAGGAAGTATCAAAATATGACAGTGGGTGTTGGCAGACTTC
GGTTTGGAGAATGACAGTGGTGGTTGACTGATGGTACAACGGAGTATTCC
CTTTTTTGGGCTTCAAGATCGGTGCGGGATGATGTGTCTGCAACACATCA
CATGAGACACGTGGTTGCAAGCACGTCCGAATCCGGCGATAAGCATCATT
TCCGACAAATGAA
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Coding sequence (CDS) from alignment at Contig_50:560658..562420+

>mRNA_8929 ID=mRNA_8929|Name=jgi.p|Trimin1|349859|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=729bp|location=Sequence derived from alignment at Contig_50:560658..562420+ (Tribonema minus UTEX_B_3156 )
ATGCTTGCCTTCGCCGCAGCCCGCGACAGCAGCAGCAGCAAGCGGCACAT
TAAGCTTTCGACCAGGCTGCAGCAATCCCTCATCGCCGACCCAACCACGC
CAGCGCCCCGTCCGCCGCGGGCGAAGAAGGCCAGAGTGGCGGCGTCGAGT
TCTGCGGCTGCAGATGCTGGGGAGCTCGGAGAGCTGATACAGAGCTGGGA
GCCTGATGCAGAGGCTTCACTGCGACACATCGAAGCCAGTGGCGCCGTCT
CCGCAGAACAGCGCCGAGCACAGATCATCAGCCAGATCTCATGCGACCAG
CGCGCCCGAGACGCCCTCATACAATTGTATGAGAGCGTGGGCATGACTGG
CGGTGGCGCGCGGTGGCAGCGGCGGCGGCACTTTGGGAAGAAGAGCGGCA
CGGCAAGGGGCGAGGTGGGCACGCCATTGGACAATGATGACAGCATCCAC
TGGGCGTGCGAGTGCTCCCCCGACATAGAGCATGTGGGGGCCGCAGACGC
GAACGTGCACTGGCGCAGTTTTGACTCCGAGGCGGCCAGCGAGGAGAACA
AGGGCAAGCTCATTCTCCCTAAACACCACGACAAGAAAACTGGCTGCACC
AAGTCTGTGCATCCTACGCGTCCCGAGGAGTTGCCTGCAGACCTGCGCAC
TGAAGACAAGTGGATCAGGTACTTTGCCGCCTCTGCGGCGCTTGGTGCGT
ACAAGACTAAGATGTCGCTTGGCAGGTAG
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