mRNA_8923 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167425
Unique NamemRNA_8923
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167425 vs. uniprot
Match: A0A835YQF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF7_9STRA)

HSP 1 Score: 431 bits (1109), Expect = 1.980e-152
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1 
Query:    1 MWKDEGSKRRANSAAAAGAADGGLGARRGAGGVLATPRQQVQYVFQHRESRAVAVVNSTGDMASAKALHTLRMASAAWRELRQVPLEQALEEASACAGDAASRLRSPLAPQQQGLQAKPLPSQRAAWAIGGHLLGFAGVSGSNGSREEDDAEPEVLGPTCRICGQVVSNTALLEEHMTLCKLRAAAKQKSATYNSELQRGSALLRTEIEVGGVMVGARVRVRARLRLRKL 690
            MWKDEGSKRRANSAAAAGAADGGLGARRGAGGVLATPRQQVQYVFQHRESRAVAVVNSTGDMASAKALHTLRMASAAWRELRQVPLEQALEEASACAGDAASRLRSPLAPQQQGLQAKPLPSQRAAWAIGGHLLGFAGVSGSNGSREEDDAEPEVLGPTCRICGQVVSNTALLEEHMTLCKLRAAAKQKSATYNSELQRGSALLRTEIEVGGVMVGARVRVRARLRLRKL
Sbjct:    1 MWKDEGSKRRANSAAAAGAADGGLGARRGAGGVLATPRQQVQYVFQHRESRAVAVVNSTGDMASAKALHTLRMASAAWRELRQVPLEQALEEASACAGDAASRLRSPLAPQQQGLQAKPLPSQRAAWAIGGHLLGFAGVSGSNGSREEDDAEPEVLGPTCRICGQVVSNTALLEEHMTLCKLRAAAKQKSATYNSELQRGSALLRTEIEVGGVMVGARVRVRARLRLRKL 230
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167425 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQF7_9STRA1.980e-152100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_50contigContig_50:517907..519679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167425|e_gw1.50.5.1
Hectar predicted targeting categoryother localisation
TranscriptId167747
TrackFilteredModels1
ProteinId167425
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167425gene_8923Tribonema minus UTEX_B_3156 geneContig_50 517907..519679 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8923_1exon_8923_1Tribonema minus UTEX_B_3156 exonContig_50 517907..518388 +
exon_8923_2exon_8923_2Tribonema minus UTEX_B_3156 exonContig_50 519469..519679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8923CDS_8923Tribonema minus UTEX_B_3156 CDSContig_50 517907..518388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167425Trimin1|167425|e_gw1.50.5.1Tribonema minus UTEX_B_3156 polypeptideContig_50 517907..519679 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8923 ID=mRNA_8923|Name=jgi.p|Trimin1|167425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=693bp|location=Sequence derived from alignment at Contig_50:517907..519679+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAAGGACGAGGGCAGCAAGCGCAGGGCCAACAGCGCTGCGGCAGC
TGGCGCAGCGGACGGGGGCCTGGGAGCCAGGAGAGGGGCCGGCGGCGTGC
TTGCGACGCCGCGGCAGCAGGTGCAGTACGTCTTTCAGCACAGGGAGAGC
AGGGCCGTGGCGGTGGTCAACAGCACTGGGGACATGGCCAGCGCCAAGGC
CCTGCACACCCTGCGCATGGCGAGCGCCGCCTGGCGGGAGCTGAGGCAGG
TGCCGCTGGAGCAGGCCTTGGAGGAAGCGAGCGCGTGCGCCGGCGACGCC
GCCAGCAGGCTCAGGTCGCCGCTGGCGCCGCAGCAGCAGGGCCTGCAGGC
GAAGCCGCTTCCGTCGCAGCGCGCCGCGTGGGCGATCGGCGGCCATTTAT
TGGGGTTTGCGGGGGTGTCTGGATCGAATGGCAGCAGGGAGGAGGACGAC
GCGGAGCCGGAGGTCCTGGGGCCGACGTGCAGGATCTGTGGGCAGGTGGT
CTCCAACACAGCGTTGTTGGAGGAGCACATGACGCTGTGCAAGCTGCGAG
CGGCGGCGAAACAGAAGAGCGCCACGTACAACTCGGAGTTGCAACGAGGC
TCTGCCTTGCTGCGGACAGAAATCGAGGTGGGTGGGGTTATGGTTGGGGC
TAGGGTTAGGGTTAGGGCTAGGTTGAGGCTTAGGAAGCTGTGA
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protein sequence of jgi.p|Trimin1|167425

>Trimin1|167425|e_gw1.50.5.1 ID=Trimin1|167425|e_gw1.50.5.1|Name=jgi.p|Trimin1|167425|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp
MWKDEGSKRRANSAAAAGAADGGLGARRGAGGVLATPRQQVQYVFQHRES
RAVAVVNSTGDMASAKALHTLRMASAAWRELRQVPLEQALEEASACAGDA
ASRLRSPLAPQQQGLQAKPLPSQRAAWAIGGHLLGFAGVSGSNGSREEDD
AEPEVLGPTCRICGQVVSNTALLEEHMTLCKLRAAAKQKSATYNSELQRG
SALLRTEIEVGGVMVGARVRVRARLRLRKL*
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mRNA from alignment at Contig_50:517907..519679+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8923 ID=mRNA_8923|Name=jgi.p|Trimin1|167425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1773bp|location=Sequence derived from alignment at Contig_50:517907..519679+ (Tribonema minus UTEX_B_3156 )
ATGTGGAAGGACGAGGGCAGCAAGCGCAGGGCCAACAGCGCTGCGGCAGC
TGGCGCAGCGGACGGGGGCCTGGGAGCCAGGAGAGGGGCCGGCGGCGTGC
TTGCGACGCCGCGGCAGCAGGTGCAGTACGTCTTTCAGCACAGGGAGAGC
AGGGCCGTGGCGGTGGTCAACAGCACTGGGGACATGGCCAGCGCCAAGGC
CCTGCACACCCTGCGCATGGCGAGCGCCGCCTGGCGGGAGCTGAGGCAGG
TGCCGCTGGAGCAGGCCTTGGAGGAAGCGAGCGCGTGCGCCGGCGACGCC
GCCAGCAGGCTCAGGTCGCCGCTGGCGCCGCAGCAGCAGGGCCTGCAGGC
GAAGCCGCTTCCGTCGCAGCGCGCCGCGTGGGCGATCGGCGGCCATTTAT
TGGGGTTTGCGGGGGTGTCTGGATCGAATGGCAGCAGGGAGGAGGACGAC
GCGGAGCCGGAGGTCCTGGGGCCGACGTGCAGGTATGCATGTATTGCAGT
ATGTTGTGTTGATGTGGGTGCAATGTTGGCTGTTGTGCGAGCTCTGAGCG
CAAGCGGCATGCGACAGCGCAGCAGCAGCTTCAGCCAGTGAAGGTGTCAT
ATTCAGGGACGCAGCGCATTGCCAGGGGCATTTCATCTACTTTGAGTTGC
AGGGACAGTCATCACATCTGCCACTACTGCTTCAGCTCAAGCACATTGAG
GGCGGACTTTGTGCGGCAAGACTCATCAGCCCTGCATACACCACATGAGA
GCTGGTACATCGCCATGCAGGGTGACCGTGGTTCCGATGCAATGCTGCAC
TGTCCGTGAAGCATTGATCGCAGAACACGCCCAGCTCATGGCACTGGCAG
ACAGTAGTTCCTTATATTGCCACTCAGTATATGCCTCTGTTGATGCGTGG
CAGCGCTCATTGGAGCTGACTGCAGGGCCCTGTCGCGCACGGGTGCGTCT
TCTGTCCGTGCCATTGGCAGCACTATGCAAGACAAATAGCGTGTTGTCAT
GTTCGTTGGCTCGGCGCTGTATGGCTGAAGTGTTGAAGTATGTGTGTTGA
TTTTGGAGTAATGGTACTTCGGAAGCGTAGCTATTACTTTTCGTCAGGGG
TGCATAGGTGTATTATGTGCAGGGCACCCTCATGCGCCGTATGTCGCGGT
ATCCTTGAGGTGACTGTTTGAGTGATTGTGTAATCTTGCAACAAAGACGT
AGACGTATTGTAGTGTTGCTTTACTGACCATTGTGGGCTTACTTTCACCC
TAAGCAAGAACATAGACATGTTGTAGTGTTGCTATACTGACACCTGGGCC
TTATTGCGCCCCAACCGAGAACATACTTCTAGAGAAGCGCACCCCATATA
GAAGCACAGCCTCATAACGTCGATCATCAATGGGCAGTGCTCAGTTGCTG
ATAAAATGCGTGATGTGCCCCAAGCGAGACTATAGAAAGCGCAATCTCAT
CATGGTGCCAATACATGGACAGTGGTCAGTGGTTGATCATGCGTGATGTG
ATAGCACATTGCGCTCAGTCATCAACCCCCCCCCCCCCCCCCCCCCACTC
CACGCACTGCAGGATCTGTGGGCAGGTGGTCTCCAACACAGCGTTGTTGG
AGGAGCACATGACGCTGTGCAAGCTGCGAGCGGCGGCGAAACAGAAGAGC
GCCACGTACAACTCGGAGTTGCAACGAGGCTCTGCCTTGCTGCGGACAGA
AATCGAGGTGGGTGGGGTTATGGTTGGGGCTAGGGTTAGGGTTAGGGCTA
GGTTGAGGCTTAGGAAGCTGTGA
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Coding sequence (CDS) from alignment at Contig_50:517907..519679+

>mRNA_8923 ID=mRNA_8923|Name=jgi.p|Trimin1|167425|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_50:517907..519679+ (Tribonema minus UTEX_B_3156 )
ATGTGGAAGGACGAGGGCAGCAAGCGCAGGGCCAACAGCGCTGCGGCAGC
TGGCGCAGCGGACGGGGGCCTGGGAGCCAGGAGAGGGGCCGGCGGCGTGC
TTGCGACGCCGCGGCAGCAGGTGCAGTACGTCTTTCAGCACAGGGAGAGC
AGGGCCGTGGCGGTGGTCAACAGCACTGGGGACATGGCCAGCGCCAAGGC
CCTGCACACCCTGCGCATGGCGAGCGCCGCCTGGCGGGAGCTGAGGCAGG
TGCCGCTGGAGCAGGCCTTGGAGGAAGCGAGCGCGTGCGCCGGCGACGCC
GCCAGCAGGCTCAGGTCGCCGCTGGCGCCGCAGCAGCAGGGCCTGCAGGC
GAAGCCGCTTCCGTCGCAGCGCGCCGCGTGGGCGATCGGCGGCCATTTAT
TGGGGTTTGCGGGGGTGTCTGGATCGAATGGCAGCAGGGAGGAGGACGAC
GCGGAGCCGGAGGTCCTGGGGCCGACGTGCAGGATCTGTGGGCAGGTGGT
CTCCAACACAGCGTTGTTGGAGGAGCACATGACGCTGTGCAAGCTGCGAG
CGGCGGCGAAACAGAAGAGCGCCACGTACAACTCGGAGTTGCAACGAGGC
TCTGCCTTGCTGCGGACAGAAATCGAGGTGGGTGGGGTTATGGTTGGGGC
TAGGGTTAGGGTTAGGGCTAGGTTGAGGCTTAGGAAGCTGTGA
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