mRNA_8901 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: A0A836CD33_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD33_9STRA) HSP 1 Score: 357 bits (916), Expect = 9.100e-123 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 2 Query: 119 MSVDKRAEIERVKGETNSALDRIITTAGHANDIGANTQAQLLEQGDRIKSINREVDKTDAVLNSTHKKLKHGFGLRGWFTSHKARVPVLDDTPAYIPSRKPRAVDRKEGDAAPASGADLTDADFDTKLDAIDKLIDNMAVTANGLHSELKAQAEDLDKVGNDVHKVDEKAKKQSRDMARRFKLK 670 MSVDKRAEIERVKGETNSALDRIITTAGHANDIGANTQAQLLEQGDRIKSINREVDKTDAVLNSTHKKLKHGFGLRGWFTSHKARVPVLDDTPAYIPSRKPRAVDRKEGDAAPASGADLTDADFDTKLDAIDKLIDNMAVTANGLHSELKAQAEDLDKVGNDVHKVDEKAKKQSRDMARRFKLK Sbjct: 1 MSVDKRAEIERVKGETNSALDRIITTAGHANDIGANTQAQLLEQGDRIKSINREVDKTDAVLNSTHKKLKHGFGLRGWFTSHKARVPVLDDTPAYIPSRKPRAVDRKEGDAAPASGADLTDADFDTKLDAIDKLIDNMAVTANGLHSELKAQAEDLDKVGNDVHKVDEKAKKQSRDMARRFKLK 184
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: A0A835YRT2_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT2_9STRA) HSP 1 Score: 774 bits (1999), Expect = 5.110e-281 Identity = 440/440 (100.00%), Postives = 440/440 (100.00%), Query Frame = 1 Query: 1 MSELEEAKEWESLLGEGIQCKTITAGEGSVPEVGHVVEYSYIGRLADGDTVFGTRQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEEEQSVAHAPPPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAALVSKTSSAGPSDTVQPRGGGGGEGGADAVPAPAAVATDGHKDGGSAGSDLDGTAGNRGQVQWPAGSRLMEGGVVTGLVAVXXXXXXXXXXXXXXXAGPFVVSAVNKTPEREVSIRCQSRAPWPLFLPAPCPAPVPAAP 1320 MSELEEAKEWESLLGEGIQCKTITAGEGSVPEVGHVVEYSYIGRLADGDTVFGTRQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEEEQSVAHAPPPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAALVSKTSSAGPSDTVQPRGGGGGEGGADAVPAPAAVATDGHKDGGSAGSDLDGTAGNRGQVQWPAGSRLMEGGVVTGLVAVXXXXXXXXXXXXXXXAGPFVVSAVNKTPEREVSIRCQSRAPWPLFLPAPCPAPVPAAP Sbjct: 1 MSELEEAKEWESLLGEGIQCKTITAGEGSVPEVGHVVEYSYIGRLADGDTVFGTRQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEEEQSVAHAPPPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAALVSKTSSAGPSDTVQPRGGGGGEGGADAVPAPAAVATDGHKDGGSAGSDLDGTAGNRGQVQWPAGSRLMEGGVVTGLVAVXXXXXXXXXXXXXXXAGPFVVSAVNKTPEREVSIRCQSRAPWPLFLPAPCPAPVPAAP 440
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: A0A6H5JHX5_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX5_9PHAE) HSP 1 Score: 178 bits (452), Expect = 5.060e-48 Identity = 122/307 (39.74%), Postives = 167/307 (54.40%), Query Frame = 1 Query: 16 EAKEWESLLGEGIQCKTITAGEGSVPEVGHVVEYSYIGR-LADGDTVFGT----RQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEEEQSVAHAP----PPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAAL 909 E+ +WE LLG ++ K + G+G P++G +V +++ G L D T G R+ + IGDGDEIPG+EL LRHM+ G+ LV+C ARFA+G A PP++D+ + L LV I + +MS ++ KK VGN H+ Y KALR Y AA + E + D++ R AR L I C NN+AM +LG L+ A +A V LE DP NVKAL+RAGQVSS Q NF EAR AL+K A++AE L R+ Y A+++AM E MG +L Sbjct: 4 ESDQWEELLGSAVRKKVVVDGDGESPDLGSLVLFTWTGSPLLDNGTTTGVPFAHRERARARIGDGDEIPGVELGLRHMRVGQQCLVRCEARFAYGGLGCPATKAGDTDLPPDTDIEVRLELVSILPSTPVPDMSPEEICAEGERKKLVGNGHFERTAYKKALRAYTAAANAVAEL-------------EFPNGDSDTFRE--ARRLRIDCGNNIAMTCYRLGELEKAKEAAVGVLEEDPTNVKALFRAGQVSSLQSNFIEARIALEKARELNPRSKAIQAELCRLAARIKSYKAKRQAMHETMGRSL 295
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: A0A835Z9Y4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y4_9STRA) HSP 1 Score: 175 bits (444), Expect = 4.490e-47 Identity = 124/266 (46.62%), Postives = 152/266 (57.14%), Query Frame = 1 Query: 202 IPGIELALRHMKPGETRLVKCVARFAWGEEEQSV-AHAPPPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEA-----------------------GSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXX-AAVRAETRELQQRVADYHARQRAMQEKMGAALVSKTS 924 + GIELAL+HM+ GE RLVKC AR AWG E A +PPP++DVVL LTL RI TAKT A MSA +R+ H TFK+ VG AH A+ Y K LRCYQAAMD Q ++QQQ +A S E A A AA L+ACA VA + + LGN K A AT +ALE+DPNNV+AL RAGQV++R+G F EARA L K AE EL+ + HA +RA++ K +SKTS Sbjct: 13 LAGIELALQHMRIGEKRLVKCAARCAWGAEHHHPNAQSPPPHADVVLVLTLARIVTAKTIARMSAAERMRHVTFKQAVGIAHIDAQRYHKGLRCYQAAMDVLQLVLKQQQVDAISSRIDDDKMRAVWQWMQHVDVISSSIEVDYKPAATAKCRIAAGTQLVACAIMVASIQLHLGNFKEARAATDVALEVDPNNVRALCRAGQVAAREGRFSEARATLHKALKRKNPADVGACAEMSELRVGIGFEHAERRALRRKKD---LSKTS 275
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: D7FW67_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW67_ECTSI) HSP 1 Score: 134 bits (337), Expect = 5.760e-32 Identity = 97/238 (40.76%), Postives = 131/238 (55.04%), Query Frame = 1 Query: 208 GIELALRHMKPGETRLVKCVARFAWGEEEQSVAHAP----PPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAAL 909 G+EL LRHM+ G+ LV+C ARFA+G A PP++D+ + L L+ I + +MS ++ KK VGN H+ Y KALR Y AA + A+ + + G D++ R AR L I C NN+AM +LG L+ A +A V LE DP NVKAL+RAGQVSS Q NF EAR AL+K A++AE L R+ Y A+++AMQE MG +L Sbjct: 23 GVELGLRHMRVGQQCLVRCEARFAYGGLGCPATKAGDTDLPPDTDIEVRLELLSILPSTPVPDMSPEEICAEGERKKLVGNGHFERTAYKKALRAYTAAAN----AVAELEFPTG---------DSDTFRE--ARRLRIDCGNNIAMTCYRLGELEKAKEAAVGVLEEDPTNVKALFRAGQVSSLQSNFIEARIALEKARELNPRSKAIQAELGRLAARIKSYKAKRQAMQETMGRSL 245
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: W7TTB6_9STRA (Peptidylprolyl isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTB6_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.370e-31 Identity = 94/302 (31.13%), Postives = 146/302 (48.34%), Query Frame = 1 Query: 25 EWESLLGEGIQCKTITAGEGSVPEVGHVVEYSYIGRLADGDTVFGTRQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEEEQSVAH-----APPPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAALVS 915 EW L+GE I+ K +T G G + EV ++ Y+GRL +F + IG+ D P +EL LRHM+ GE +V A++ +G + V A PP++ + E+ ++ I P + + RL KK GN + K Y +A+RCYQA + + E+ G EE +A A + +NN+A ++L K A + V +E+D +NVKALYR G + RQ NF EA ALK+ + A +EL + Y +++ M +KMG L++ Sbjct: 22 EWNELIGEDIKYKVLTPGHGPIAEVQMMLRCKYVGRLRSTGQIFEVAEDTGYRIGESDTTPALELGLRHMRKGEKGMVHAEAKYGFGPPGRPVVAPGAEVAVPPDAALEYEIEVIDILPPFNPKDAPLEARLGETELKKRHGNGFFHHKDYTRAIRCYQAGLKALDA-------ESVDGEEEDEEA------YEAMVKMFCDVSNNLAAALIKLERWKDAKEVCVKVIEVDKDNVKALYRGGVAALRQDNFLEAELALKEAAKLAPKDKLIHAAVQELYRNRTQYIEKEKVMMKKMGGFLLT 310
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: A0A7S2REJ1_9STRA (Peptidylprolyl isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REJ1_9STRA) HSP 1 Score: 126 bits (317), Expect = 9.500e-29 Identity = 93/269 (34.57%), Postives = 136/269 (50.56%), Query Frame = 1 Query: 136 ADGDTVFGTRQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEEEQSVAH----APPPNSDVVLELTLVRIATAKTP-AEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAA---RALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAALVSK 918 ADG +F Q + +GDGD +PG+ELALR++ PG+ V C RFA+G + H A DV + V TP A M+ D+RL A K++ GN + + + +A RCY AA+ EG++ + +AA A +LL+ C NN+A+ H++L + K A DA + L +DP NVKALYRAG + G ++EAR AL + AV E R LQ + +Y + + + MGA L +K Sbjct: 55 ADGLELFAD-QALSVRLGDGDVVPGVELALRYLGPGDRARVCCAHRFAFGLSGRPAKHEGERAIAAEQDVDF-IVAVSTVDPNTPVAGMALDERLREADCKRQSGNIFFLYEDWARATRCYAAALKAL----------------EGAENEEDAAEPDTAGHIHSLLVDCGNNLALAHLRLDDPKKAEDACIAVLSLDPANVKALYRAGVATKLMGRYDEARLALDRALELDPSNKAVVKELRNLQAKRLEYRQKDARIAQAMGAKLFAK 305
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: A0A2D4BLJ9_PYTIN (Peptidylprolyl isomerase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLJ9_PYTIN) HSP 1 Score: 122 bits (307), Expect = 1.110e-27 Identity = 93/298 (31.21%), Postives = 154/298 (51.68%), Query Frame = 1 Query: 13 EEAKEWESLLGEG-IQCKTITAGEGSVPEVGHVVEYSYIGRLADGDTVFGTRQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEEEQSVAHAPPPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSA-ARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMG 900 +E + +E +LG G I + GEG+ PE G V Y R D D V Q + IGDG+ +P +ELA + M+ G+ V+C RFA+G++ + PP++ + L + L+R+ T A+M+ + L A KKE GN ++ + Y +A + Y+ A+ + G E G D DA +A + LL+A NNVA V +L K A +++ L++DP N+KALYR Q++ G+F++A +K+ A R +++Q+ + AR++ + K+G Sbjct: 8 DEKQHYEDILGSGGIFRRVFKTGEGAQPEYGEEVTVRYSERRLDTDAVISQDQVRQFRIGDGEVMPALELAAKMMREGDAHEVRCDPRFAYGDK--GLDGVVPPDTPLKLFVELLRVGKRLT-ADMTPSELLVEAEKKKESGNRYFRERKYDQAAKMYKKALTVLE------------GWERGDDGDAXXXXEAAKCKELLVALGNNVANVQHRLDQRKEARQSSLEVLQLDPQNLKALYRLAQLALEGGDFDDATLFVKQAIAVDPQSAKFRDMLVQIKQKKEAHRAREKELFAKLG 290
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: K3WN40_GLOUD (Peptidylprolyl isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WN40_GLOUD) HSP 1 Score: 119 bits (299), Expect = 9.830e-27 Identity = 98/305 (32.13%), Postives = 153/305 (50.16%), Query Frame = 1 Query: 13 EEAKEWESLLGEG-IQCKTI-TAGEGSVPEVGHVVEYSYIGRLADGDTVFGTRQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEE--EQSVAHAPPPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAALVS 915 EE +++ LLG G I K + T +G+ E G + Y L +GD Q K IGDG+ +P +EL + M+ GE V+C ARFA+G+ E V P + + L + L+R+ K AEM++ + +E A KKE GN ++ K+Y +A + Y+ A+ ++ E S+ DA A ++ LLIA NNV V +L K A D+++ L++DP NVKA+YR GQ+ Q +F EA L+K VR ++L+++ Q+ + K+G S Sbjct: 7 EERADFDDLLGSGGIFRKMLRTNPDGAQAEFGEEITIRYSEHLLEGDVTVSQDQTRKIRIGDGEVMPALELVGKMMRVGEACEVRCDARFAYGDVGLEPKVL----PGAAMKLFIELLRVGK-KITAEMTSQELIEEANKKKESGNRYFKEKNYEQAAKLYKRALKLLETW-------------EHSEEDAQACKD-----LLIALGNNVGNVQFRLKQYKEARDSSLEVLQLDPRNVKAMYRVGQIGLEQNDFTEALEFLQKATVIEPKNVKVRQLIKDLKKKKQQVKQEQKKLYSKLGGKSAS 288
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: A0A7S1TZ54_9STRA (Peptidylprolyl isomerase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ54_9STRA) HSP 1 Score: 116 bits (291), Expect = 4.650e-25 Identity = 101/321 (31.46%), Postives = 155/321 (48.29%), Query Frame = 1 Query: 19 AKEWESLLGEGIQCKTITAGEGSVPEVGHVVEYSYIGRLA-----DGDTVFGT---------RQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEEEQSVAHAP----PPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAALVSKTSS 927 A WE L+G I+ +T+ G+ PEV V S+ R+A DG F ++ V IG+G+ +P +ELALRHM+ GE ++RFAWG + P ++DV+L + L I K A+ RL A ++K GN +Y + +A R + AA+ + ++ + + A LL+ C +N+A V V L N A DA V LE+DP++VKALYRAG + +F A A+K AAVR R+L+ R A+Y +++AM +++G ++S SS Sbjct: 5 APAWEELMGGNIRKRTLRPSSGAAPEVQDHVCASFSLRVARPKGGDGGEGFDVEADGPVLQRKERVWYKIGEGEAVPVLELALRHMRVGEELEAYGISRFAWGPDGLPAIREGDADLPGDADVLLTVELHEI---KAETASVAEARLFEAGWRKRNGNDYYRHRDLRRAARAFAAALKLFTEPLP----------DDAIPEELRERYGAEATQLLVDCGSNLAAVQVALKNWPAARDAAVGVLEVDPSHVKALYRAGTAAMHLHDFAGATLAVKTALAADPDNAAVRRLARDLKARKAEYAEKKKAMGKRLGRDMLSIDSS 312
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Match: A0A8K1CNQ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNQ6_PYTOL) HSP 1 Score: 110 bits (274), Expect = 3.800e-23 Identity = 93/310 (30.00%), Postives = 153/310 (49.35%), Query Frame = 1 Query: 28 WESLLGEG--IQCKTITAGEGSVPEVGHVVEYSYIGRLADGDTVFGTRQGVKTCIGDGDEIPGIELALRHMKPGETRLVKCVARFAWGEEEQSVAHAPPPNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKMGAALVSKTSSAGPSDTVQ 951 +E +LG G + T EG E G V Y L + D Q + IGDG+ +P +EL + M+ GE ++C RFA+G++ +A PPN+ + + L L+R+ T AEM++ + L A KKE GN ++ + Y +A Y+ A+ +S G +A+AA ++ + LL+A NNVA V +L K A +++ L++DP NVKA+YR Q+S + F +A LK+ + R+ ++ + ++ARQ+ + K+ A K S A ++T Q Sbjct: 13 FEDVLGSGGIFRRMVKTNPEGGQAEFGEEVTIRYSEHLLETDKPTSQDQVREFRIGDGEVMPALELCGKMMRVGEVCEIRCDPRFAYGDK--GLAPHVPPNAPMKILLELLRVGKRIT-AEMTSKELLVEAGKKKESGNRYFKEQKYDRAANLYKKALKILES-----------WERSGESEEADAAESAECKELLVALGNNVANVQHKLQQYKEAKQSSLEVLQLDPKNVKAIYRLAQISLDESEFSDASMYLKQALKLEPNNSKFRSMVSSIKAKKELFNARQKKLYSKL-APSSKKDSPAAATETEQ 307 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|349840 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8901 ID=mRNA_8901|Name=jgi.p|Trimin1|349840|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_50:307782..308648- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGGACATCGCGGAGGTGTCGTTGACCGGCGTGCGTCTATCGTGCACAAGback to top protein sequence of jgi.p|Trimin1|349840 >Trimin1|349840|estExt_Genemark1.C_Ctg_500042 ID=Trimin1|349840|estExt_Genemark1.C_Ctg_500042|Name=jgi.p|Trimin1|349840|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=185bp MSVDKRAEIERVKGETNSALDRIITTAGHANDIGANTQAQLLEQGDRIKSback to top mRNA from alignment at Contig_50:307782..308648- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8901 ID=mRNA_8901|Name=jgi.p|Trimin1|349840|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_50:307782..308648- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_50:307782..308648- >mRNA_8901 ID=mRNA_8901|Name=jgi.p|Trimin1|349840|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=555bp|location=Sequence derived from alignment at Contig_50:307782..308648- (Tribonema minus UTEX_B_3156 )back to top |