mRNA_88 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157237
Unique NamemRNA_88
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: A0A835ZFY7_9STRA (Histone H4 (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFY7_9STRA)

HSP 1 Score: 182 bits (461), Expect = 4.890e-58
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 MPPRTGGHGIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            MPPRTGGH IRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKR GRPLYGFG
Sbjct:    1 MPPRTGGHVIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRLGRPLYGFG 95
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: A0A3B3HUN7_ORYLA (Histone H4 n=7 Tax=Clupeocephala TaxID=186625 RepID=A0A3B3HUN7_ORYLA)

HSP 1 Score: 143 bits (361), Expect = 8.010e-43
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:   16 GGHGIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            GG G RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR+GR LYGFG
Sbjct:    2 GGVGGRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 91
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: A0A836CMT6_9STRA (Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT6_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.080e-42
Identity = 74/96 (77.08%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:   16 GGHGI------RHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            GG G+      RHRKVLRDNI G+T AAIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RD+VTYTEHARRKTVT++DVVLALKR+GR LYGFG
Sbjct:    7 GGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: A0A4W4GNT0_ELEEL (Histone H4 n=5 Tax=Clupeocephala TaxID=186625 RepID=A0A4W4GNT0_ELEEL)

HSP 1 Score: 143 bits (360), Expect = 1.140e-42
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:   19 GHGIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            G+G RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR+GR LYGFG
Sbjct:    3 GYGGRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 91
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: A0A669DB70_ORENI (Histone H4 n=5 Tax=Clupeocephala TaxID=186625 RepID=A0A669DB70_ORENI)

HSP 1 Score: 143 bits (360), Expect = 1.170e-42
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:   10 RTGGHGIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            ++GG   RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR+GR LYGFG
Sbjct:    1 KSGGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 92
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: UPI001E1D1501 (histone H4-like n=2 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D1501)

HSP 1 Score: 144 bits (363), Expect = 1.270e-42
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    7 PRTGGHGI------RHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            PR GG G+      RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR+GR LYGFG
Sbjct:   31 PRQGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 129
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: A0A7L2ACY7_9GRUI (Histone H4 (Fragment) n=2 Tax=Amniota TaxID=32524 RepID=A0A7L2ACY7_9GRUI)

HSP 1 Score: 143 bits (360), Expect = 1.590e-42
Identity = 73/96 (76.04%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:   16 GGHGI------RHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            GG G+      RHRKVLRDNI G+T  AIRRL RRGGVKRIS L+YEETRGVLKVFLE ++RDAVTYTEHA+RKTVT++DVV ALKR+GRPLYGFG
Sbjct:    7 GGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRPLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: A0A6A6GR40_9PEZI (Histone H4 n=1 Tax=Elsinoe ampelina TaxID=302913 RepID=A0A6A6GR40_9PEZI)

HSP 1 Score: 143 bits (360), Expect = 2.510e-42
Identity = 73/101 (72.28%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    1 MPPRTGGHGI------RHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            +P   GG G+      RHRK+LRDNI G+T  AIRRL RRGGVKRIS ++YEETRGVLK FLEG++RDAVTYTEHA+RKTVTSLDVV ALKR+GR LYGFG
Sbjct:   17 IPGGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 117
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: A0A084QTY6_STAC4 (Histone H4 n=9 Tax=leotiomyceta TaxID=716546 RepID=A0A084QTY6_STAC4)

HSP 1 Score: 142 bits (359), Expect = 2.550e-42
Identity = 74/102 (72.55%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:    7 PRTGGHG---------IRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            P TGG G          RHRK+LRDNI G+T  AIRRL RRGGVKRIS ++YEETRGVLK FLEG++RDAVTYTEHA+RKTVTSLDVV ALKR+GR LYGFG
Sbjct:    5 PLTGGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 106
[Close]
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Match: A0A836CBN9_9STRA (Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.670e-42
Identity = 74/97 (76.29%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 MPPRTGGHGI--RHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRGVLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG 285
            MPPR     +  RH K LRDNI G+T  AIRRLCRRGGVKRIS L+YEE RGVLKVFLE +V DAVTYTEHA+RKTVTSLDVVLALKR+GRP+YGFG
Sbjct:    1 MPPRRAPRTLPKRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 97
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157237 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFY7_9STRA4.890e-5897.89Histone H4 (Fragment) n=2 Tax=Tribonema minus TaxI... [more]
A0A3B3HUN7_ORYLA8.010e-4380.00Histone H4 n=7 Tax=Clupeocephala TaxID=186625 RepI... [more]
A0A836CMT6_9STRA1.080e-4277.08Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
A0A4W4GNT0_ELEEL1.140e-4279.78Histone H4 n=5 Tax=Clupeocephala TaxID=186625 RepI... [more]
A0A669DB70_ORENI1.170e-4277.17Histone H4 n=5 Tax=Clupeocephala TaxID=186625 RepI... [more]
UPI001E1D15011.270e-4274.75histone H4-like n=2 Tax=Portunus trituberculatus T... [more]
A0A7L2ACY7_9GRUI1.590e-4276.04Histone H4 (Fragment) n=2 Tax=Amniota TaxID=32524 ... [more]
A0A6A6GR40_9PEZI2.510e-4272.28Histone H4 n=1 Tax=Elsinoe ampelina TaxID=302913 R... [more]
A0A084QTY6_STAC42.550e-4272.55Histone H4 n=9 Tax=leotiomyceta TaxID=716546 RepID... [more]
A0A836CBN9_9STRA2.670e-4276.29Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:465064..465348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157237|e_gw1.3.93.1
BRITEko00000,ko00001,ko03036,ko04147
KEGG Pathwayko05034,ko05202,ko05203,ko05322,map05034,map05202,map05203,map05322
KEGG koko:K11253,ko:K11254
Preferred nameH3F3C
DescriptionHistone cluster 1
COG categoryB
Max annot lvl33208|Metazoa
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota,KOG3467@2759|Eukaryota,39ZTV@33154|Opisthokonta,3BPDH@33208|Metazoa,3D6BK@33213|Bilateria,48E1W@7711|Chordata,49B7M@7742|Vertebrata,3JEM2@40674|Mammalia,35T38@314146|Euarchontoglires,4MJEA@9443|Primates,36BI3@314294|Cercopithecoidea
Evalue2.4e-40
Seed ortholog61622.XP_010372995.1
Hectar predicted targeting categoryother localisation
TranscriptId157559
TrackFilteredModels1
ProteinId157237
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157237gene_88Tribonema minus UTEX_B_3156 geneContig_3 465064..465348 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_88_1exon_88_1Tribonema minus UTEX_B_3156 exonContig_3 465064..465348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_88CDS_88Tribonema minus UTEX_B_3156 CDSContig_3 465064..465348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157237Trimin1|157237|e_gw1.3.93.1Tribonema minus UTEX_B_3156 polypeptideContig_3 465064..465348 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_88 ID=mRNA_88|Name=jgi.p|Trimin1|157237|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_3:465064..465348+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGCGGACCGGGGGCCATGGCATTCGCCACCGAAAGGTGCTGCG
TGACAACATCCTCGGAGTCACGAATGCTGCCATCCGGCGCCTCTGTCGCC
GGGGCGGCGTCAAGCGCATATCAAAACTTGTGTACGAGGAGACTCGCGGC
GTCCTCAAAGTGTTTCTGGAAGGCATCGTGCGCGACGCCGTCACTTACAC
GGAGCACGCGCGACGCAAGACCGTCACTTCGCTCGACGTGGTACTCGCGC
TTAAACGGCGCGGCCGGCCTCTGTACGGGTTCGGC
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protein sequence of jgi.p|Trimin1|157237

>Trimin1|157237|e_gw1.3.93.1 ID=Trimin1|157237|e_gw1.3.93.1|Name=jgi.p|Trimin1|157237|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
MPPRTGGHGIRHRKVLRDNILGVTNAAIRRLCRRGGVKRISKLVYEETRG
VLKVFLEGIVRDAVTYTEHARRKTVTSLDVVLALKRRGRPLYGFG
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mRNA from alignment at Contig_3:465064..465348+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_88 ID=mRNA_88|Name=jgi.p|Trimin1|157237|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_3:465064..465348+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCGCGGACCGGGGGCCATGGCATTCGCCACCGAAAGGTGCTGCG
TGACAACATCCTCGGAGTCACGAATGCTGCCATCCGGCGCCTCTGTCGCC
GGGGCGGCGTCAAGCGCATATCAAAACTTGTGTACGAGGAGACTCGCGGC
GTCCTCAAAGTGTTTCTGGAAGGCATCGTGCGCGACGCCGTCACTTACAC
GGAGCACGCGCGACGCAAGACCGTCACTTCGCTCGACGTGGTACTCGCGC
TTAAACGGCGCGGCCGGCCTCTGTACGGGTTCGGC
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Coding sequence (CDS) from alignment at Contig_3:465064..465348+

>mRNA_88 ID=mRNA_88|Name=jgi.p|Trimin1|157237|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_3:465064..465348+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCGCGGACCGGGGGCCATGGCATTCGCCACCGAAAGGTGCTGCG
TGACAACATCCTCGGAGTCACGAATGCTGCCATCCGGCGCCTCTGTCGCC
GGGGCGGCGTCAAGCGCATATCAAAACTTGTGTACGAGGAGACTCGCGGC
GTCCTCAAAGTGTTTCTGGAAGGCATCGTGCGCGACGCCGTCACTTACAC
GGAGCACGCGCGACGCAAGACCGTCACTTCGCTCGACGTGGTACTCGCGC
TTAAACGGCGCGGCCGGCCTCTGTACGGGTTCGGC
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