mRNA_8893 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167343
Unique NamemRNA_8893
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167343 vs. uniprot
Match: A0A835YZU3_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZU3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.580e-6
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 NALCGALPATVGALRQLRLLDLQDNQL 81
            NALCGALPATVGALRQLRLLDLQDNQL
Sbjct:    1 NALCGALPATVGALRQLRLLDLQDNQL 27
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167343 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YZU3_9STRA2.580e-6100.00Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_50contigContig_50:243058..243660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167343|e_gw1.50.150.1
Hectar predicted targeting categoryother localisation
TranscriptId167665
TrackFilteredModels1
ProteinId167343
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167343gene_8893Tribonema minus UTEX_B_3156 geneContig_50 243058..243660 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8893_1exon_8893_1Tribonema minus UTEX_B_3156 exonContig_50 243058..243660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8893CDS_8893Tribonema minus UTEX_B_3156 CDSContig_50 243058..243660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167343Trimin1|167343|e_gw1.50.150.1Tribonema minus UTEX_B_3156 polypeptideContig_50 243058..243660 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8893 ID=mRNA_8893|Name=jgi.p|Trimin1|167343|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=603bp|location=Sequence derived from alignment at Contig_50:243058..243660+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AACGCTCTCTGCGGCGCCCTGCCGGCCACAGTCGGCGCGCTGCGCCAGCT
GCGCCTGCTGGACCTCCAAGACAACCAGCTCAGCGGGCCGCTGCCCGACG
CGCTCGGCCAACTTCAACTCTTGCAGTGGCTCAACCTTGCGGGCAACATG
CTCACCGGCCCCATCCCCCCCTCCATAGGCCGCATGTCCTCGCTCGTGAG
CCTGGACCTCAGCCGCAACCGCCTCGAGGGCCCGCTCCCGCCCGAGATCG
GCGCGCTGCCGCTGCTGCAGTCGCTGTACCTGGGCAGCAACCGCCTCTCC
GGGGCGCTGCCGCCGGCGCTCGGGCGCGCGCGCAGCCTCATCTTCCTCGT
CCTCTCCAACAACGCCTTCAGCGGGTGCGTGCCGGCGGAGCTCGGCGCGC
TCGACTGCCTGCAGGACCTGCGCCTCGACCACAACGCGTTTGACGGCGCC
GTCCCCGAGGAACTCGCGGGGCTCAAGGCGCTCAAGACGCTGCGCGTGGA
GGACAATCAGCTGAGCGGTGCTGTGCCGCGCGAGCTGCGCAAGGCGCTGG
GGATGGGCCCGGAGCCGGTTGTGCCCACGGGATGTCGCTGCGTGATCGCG
TAG
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protein sequence of jgi.p|Trimin1|167343

>Trimin1|167343|e_gw1.50.150.1 ID=Trimin1|167343|e_gw1.50.150.1|Name=jgi.p|Trimin1|167343|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=201bp
NALCGALPATVGALRQLRLLDLQDNQLSGPLPDALGQLQLLQWLNLAGNM
LTGPIPPSIGRMSSLVSLDLSRNRLEGPLPPEIGALPLLQSLYLGSNRLS
GALPPALGRARSLIFLVLSNNAFSGCVPAELGALDCLQDLRLDHNAFDGA
VPEELAGLKALKTLRVEDNQLSGAVPRELRKALGMGPEPVVPTGCRCVIA
*
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mRNA from alignment at Contig_50:243058..243660+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8893 ID=mRNA_8893|Name=jgi.p|Trimin1|167343|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=603bp|location=Sequence derived from alignment at Contig_50:243058..243660+ (Tribonema minus UTEX_B_3156 )
AACGCTCTCTGCGGCGCCCTGCCGGCCACAGTCGGCGCGCTGCGCCAGCT
GCGCCTGCTGGACCTCCAAGACAACCAGCTCAGCGGGCCGCTGCCCGACG
CGCTCGGCCAACTTCAACTCTTGCAGTGGCTCAACCTTGCGGGCAACATG
CTCACCGGCCCCATCCCCCCCTCCATAGGCCGCATGTCCTCGCTCGTGAG
CCTGGACCTCAGCCGCAACCGCCTCGAGGGCCCGCTCCCGCCCGAGATCG
GCGCGCTGCCGCTGCTGCAGTCGCTGTACCTGGGCAGCAACCGCCTCTCC
GGGGCGCTGCCGCCGGCGCTCGGGCGCGCGCGCAGCCTCATCTTCCTCGT
CCTCTCCAACAACGCCTTCAGCGGGTGCGTGCCGGCGGAGCTCGGCGCGC
TCGACTGCCTGCAGGACCTGCGCCTCGACCACAACGCGTTTGACGGCGCC
GTCCCCGAGGAACTCGCGGGGCTCAAGGCGCTCAAGACGCTGCGCGTGGA
GGACAATCAGCTGAGCGGTGCTGTGCCGCGCGAGCTGCGCAAGGCGCTGG
GGATGGGCCCGGAGCCGGTTGTGCCCACGGGATGTCGCTGCGTGATCGCG
TAG
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Coding sequence (CDS) from alignment at Contig_50:243058..243660+

>mRNA_8893 ID=mRNA_8893|Name=jgi.p|Trimin1|167343|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=603bp|location=Sequence derived from alignment at Contig_50:243058..243660+ (Tribonema minus UTEX_B_3156 )
AACGCTCTCTGCGGCGCCCTGCCGGCCACAGTCGGCGCGCTGCGCCAGCT
GCGCCTGCTGGACCTCCAAGACAACCAGCTCAGCGGGCCGCTGCCCGACG
CGCTCGGCCAACTTCAACTCTTGCAGTGGCTCAACCTTGCGGGCAACATG
CTCACCGGCCCCATCCCCCCCTCCATAGGCCGCATGTCCTCGCTCGTGAG
CCTGGACCTCAGCCGCAACCGCCTCGAGGGCCCGCTCCCGCCCGAGATCG
GCGCGCTGCCGCTGCTGCAGTCGCTGTACCTGGGCAGCAACCGCCTCTCC
GGGGCGCTGCCGCCGGCGCTCGGGCGCGCGCGCAGCCTCATCTTCCTCGT
CCTCTCCAACAACGCCTTCAGCGGGTGCGTGCCGGCGGAGCTCGGCGCGC
TCGACTGCCTGCAGGACCTGCGCCTCGACCACAACGCGTTTGACGGCGCC
GTCCCCGAGGAACTCGCGGGGCTCAAGGCGCTCAAGACGCTGCGCGTGGA
GGACAATCAGCTGAGCGGTGCTGTGCCGCGCGAGCTGCGCAAGGCGCTGG
GGATGGGCCCGGAGCCGGTTGTGCCCACGGGATGTCGCTGCGTGATCGCG
TAG
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