mRNA_8828 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|167482
Unique Name	mRNA_8828
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: A0A835YQW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW6_9STRA)

HSP 1 Score: 637 bits (1642), Expect = 3.900e-231
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 1

Query:    1 MYHSTTHGPARVLPSPQCHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPHLDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKAWTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVRPSRVQCVAAPPLSSIARIIQIVYAWGRMCSQPGCAHGQVLLGPQLQRGAP 918
            MYHSTTHGPARVLPSPQCHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPHLDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKAWTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVRPSRVQCVAAPPLSSIARIIQIVYAWGRMCSQPGCAHGQVLLGPQLQRGAP
Sbjct:    1 MYHSTTHGPARVLPSPQCHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPHLDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKAWTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVRPSRVQCVAAPPLSSIARIIQIVYAWGRMCSQPGCAHGQVLLGPQLQRGAP 306

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BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: A0A836CC17_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC17_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.820e-61
Identity = 122/262 (46.56%), Postives = 148/262 (56.49%), Query Frame = 1

Query:   31 RVLPSPQCHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHA-----AEASRDRGGAPHLDPSMMAE-LNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSS-------AWGEFPRALAAALPG--FTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKA-WTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVR 768
            RV    +C A  CTLR  A+ +A RRHYHA+C+HRH  G K GMRFHHHQLEKIRKHQ  HA     A A      +P   P  + E L + G+ELH+   W   AT  L  LV     R S        AW     ALAA        +S  QC+L WR V+N G  VTGV TW + ED RL  LV  F   WS+VA+ +PGREPKQCRERF NVV+P+  R   WTPEED LL  +  +  ++FA  A+     SYN+V+
Sbjct:    8 RVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVK 269

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BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: A0A835YVJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ8_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.240e-55
Identity = 100/204 (49.02%), Postives = 120/204 (58.82%), Query Frame = 1

Query:   52 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPHLDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKAW 663
            C AE CTLR++   +ARRRHYHA CEHRHS GPK GM  HHHQLEK+RKHQS H  +  R    A   D    A L   G E + P AW   AT+ L  LV        + W +  R L AA  G   S QQCLLHWR+ +N G  V   R WS  ED RL ++V++ G +W AVA+LLPGR+ KQCRE + NVV P    + W
Sbjct:  139 CDAEQCTLREETRRIARRRHYHALCEHRHSAGPKAGMPLHHHQLEKVRKHQSTHEVQCCRTLASALQTDADTAAALARAGAEAYRPGAWSAAATQALAALVXXXXXXXXAQWTDVARQLTAAT-GLRASAQQCLLHWRIAVNKGETVAASRAWSVTEDDRLVAVVSVMGVRWPAVARLLPGRDLKQCREHYTNVVLPGGKPRPW 341

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BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 3.070e-53
Identity = 110/259 (42.47%), Postives = 148/259 (57.14%), Query Frame = 1

Query:   52 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPH--LDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMF-----GTKWSAVAQLLPGREPKQCRERFLNVVDPS-KTRKAWTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVRPSRVQCVA-APP 801
            C +  CT RD A+ +A RRHYH+ C H H+ G K GM FHHHQLEK++KHQ +H  EA++    AP+    P     +   G+E + P  W  E TR LD LV   V   + AW     ++A   P  T +  QCLLHWR  +N+ G + G  TW   ED RL  L  +F     G +W+ +A+++PGR  KQCRER+ N VDP  K  K WT EED L++++H    NQFA+ A+    R Y++V+  RVQ    APP
Sbjct:  224 CTSRDCTYRD-AARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKS---APYKRTTPEDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWP----SIARYFP--TKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPVFSSPSTGPRWAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRVQSACEAPP 472

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BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: A0A835ZA42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA42_9STRA)

HSP 1 Score: 182 bits (463), Expect = 4.610e-53
Identity = 106/229 (46.29%), Postives = 135/229 (58.95%), Query Frame = 1

Query:   49 QCHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAH------AAEASRDRGGAPHLDPSMMAE-LNSHGIELHNPEAWPPEATRHLDTLV-----RGPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKA-WTPEEDELLLRV 696
            +C A+ CT+R   + +A RRHYHA C H H++G K GMRFHHHQLEKIRKHQ AH      A  A       P   P  +AE L   G EL++P  W  +A   L  LV     R  VGR   AW +    +AAA+    +S  QC+LHWR V+N G  + GV TW + ED RL +L   F   W+ +A+ +PGR PKQCRERF NV+DP+  ++A W P EDELL+ V
Sbjct:    3 RCEAQDCTMRAAGTRLATRRHYHATCGHVHASGAKAGMRFHHHQLEKIRKHQRAHKRSSVIALTAPAPDSPYPGGLPVEVAEALLRGGAELYDPALWSADAGARLGALVEQQHARRGVGR--VAWDK----VAAAMRAPALSASQCMLHWRDVVNGGAIIMGVGTWCNAEDTRLRALTAHFRQSWATIARFMPGRGPKQCRERFNNVIDPASHKRAPWKPAEDELLMAV 225

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BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.570e-49
Identity = 104/247 (42.11%), Postives = 142/247 (57.49%), Query Frame = 1

Query:   52 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPH--LDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMF-----GTKWSAVAQLLPGREPKQCRERFLNVVDPS-KTRKAWTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVR 768
            C +  CT RD A+ +A RRHYH+ C H H+ G K GM FHHHQLEK++KHQ +H  EA++    AP+    P     +   G+E + P  W  E TR LD LV   V   + AW     ++A   P  T +  QCLLHWR  +N+ G + G  TW   ED RL  L  +F     G +W+ +A+++PGR  KQCRER+ N VDP  K  K WT EED L++++H    NQFA+ A+    R Y++V+
Sbjct:  353 CTSRDCTYRD-AARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKS---APYKRTTPEDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWP----SIARYFP--TKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPVFSSPSTGPRWAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVK 589

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BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: A0A6H5JLY2_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 5.380e-49
Identity = 103/241 (42.74%), Postives = 134/241 (55.60%), Query Frame = 1

Query:   52 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPHLDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVR--GPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKAWTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVR 768
            C +  C  +D  + ++ RRHYHA C+HRH  GPK GM FHHHQLEKI+KHQ AH            H      A LN   +E + P+ W  +    L  LV   GP       WG     + +A  G T +  QC+LHWR  +N    V G  TW  VED R+ SLV +FG +WS VA+ +PGR  KQCRER+LN +DP   R AW+ EEDE LL++  +    FA+ A+    RSYN+V+
Sbjct:  566 CSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTL--------HKKTPAEAVLNEGNVEPYLPQEWTEQEASVLAHLVGMYGPTN-----WG-----IISAGVG-TKTETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSREEDEKLLQLRGQQNKSFAKIAEQIDGRSYNDVK 787

[Close]

BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: D8LCS2_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 7.470e-46
Identity = 102/258 (39.53%), Postives = 132/258 (51.16%), Query Frame = 1

Query:   52 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPHLDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVR--GPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKAWTPE-----------------EDELLLRVHDRVRNQFARTAKYFSDRSYNEVR 768
            C +  C  +D  + ++ RRHYHA C+HRH  GPK GM FHHHQLEKI+KHQ AH            H      A LN   +E + P+ W  +    L  LV   GP       WG     +A      T +  QC+LHWR  +N    V G  TW  VED R+ SLV +FG +WS VA+ +PGR  KQCRER+LN +DP   R AW+ E                 EDE LL++  +    FA+ A+    RSYN+V+
Sbjct:  580 CSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTL--------HKKTPAEAVLNEGNVEPYLPQEWTEQEASVLAHLVGMYGPTN-----WGIISAGVA------TKTETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSREARNKKQRVLCAYVGKGLEDEKLLQLRGQQNKSFAKIAEQIDGRSYNDVK 818

[Close]

BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 6.230e-44
Identity = 101/269 (37.55%), Postives = 139/269 (51.67%), Query Frame = 1

Query:   52 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDR-------GGAPHLDPSMMAE--------------------LNSHGIELHNPEAWPPEATRHLDTLVR--GPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKA-WTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVR 768
            C A+ C  R +    ARRRHYHA C H H  G + GMRF HHQLEK++KHQ AH   A ++          A    P+ +A                     +    +E H+P+ W PE T+ L  LV   GP       W      +A  +PG T +   C+LHWR+ +N    V G  TW+  ED RL+ LV + G KWS +A+ +PGR  KQCRER+LN +DPS  +   WT +E+ LL+R+    +NQ+A   +    RSYN+V+
Sbjct:  130 CTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQVSAKQNTQRSSIGSSAAKPRSPTTVAAAPRNKRVAAATSGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPK------WSN----IADKMPGKTATA--CMLHWRVGVNPDHMVKGSGTWTAEEDERLSKLVEVVGMKWSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQ 386

[Close]

BLAST of jgi.p|Trimin1|167482 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.510e-42
Identity = 101/264 (38.26%), Postives = 138/264 (52.27%), Query Frame = 1

Query:   52 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAH--------------------AAEASRDR--GGAPHLDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVR--GPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKA-WTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVR 768
            C A+ C  R +    ARRRHYHA C H H  G + GMRF HHQLEK++KHQ AH                     A A R++    A +        +    +E H+P+ W PE T+ L  LV   GP       W      +A  +PG T +   C+LHWR+ +N    V G  TW+  ED RL+ LV + G KWS +A+ +PGR  KQCRER+LN +DPS  +   WT +E+ LL+R+    +NQ+A   +    RSYN+V+
Sbjct:  873 CTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQTSSIGSSAAKPRSPTTVATAPRNKRVAAASNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPK------WSN----IADKMPGKTATA--CMLHWRVGVNPNHMVKGSGTWTAEEDERLSKLVEVVGMKWSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVK 1124

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|167482 vs. uniprot

BLAST of jgi.p|Trimin1|167482 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YQW6_9STRA	3.900e-231	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CC17_9STRA	1.820e-61	46.56	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A835YVJ8_9STRA	1.240e-55	49.02	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5KQ17_9PHAE	3.070e-53	42.47	MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
A0A835ZA42_9STRA	4.610e-53	46.29	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LH85_ECTSI	1.570e-49	42.11	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JLY2_9PHAE	5.380e-49	42.74	MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D8LCS2_ECTSI	7.470e-46	39.53	Myb-like DNA-binding domain containing protein n=1...	[more]
D7FJZ9_ECTSI	6.230e-44	37.55	Putative c-myb-like transcription factor n=1 Tax=E...	[more]
A0A6H5JMK3_9PHAE	1.510e-42	38.26	MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_51	contig	Contig_51:672893..674828 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|167482\|e_gw1.51.74.1
BRITE	ko00000,ko00001,ko03000
KEGG Pathway	ko04151,ko05166,map04151,map05166
KEGG ko	ko:K09420
Description	RNA polymerase II transcription regulator recruiting activity
COG category	ADK
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG5147@1\|root,KOG0048@2759\|Eukaryota
Evalue	2.57e-50
Seed ortholog	2880.D8LH85
Hectar predicted targeting category	other localisation
TranscriptId	167804
Track	FilteredModels1
ProteinId	167482

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|167482	gene_8828	Tribonema minus UTEX_B_3156	gene	Contig_51 672893..674828 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|167482	Trimin1\|167482\|e_gw1.51.74.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_51 672893..674828 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8828_4	exon_8828_4	Tribonema minus UTEX_B_3156	exon	Contig_51 672893..673180 -
exon_8828_3	exon_8828_3	Tribonema minus UTEX_B_3156	exon	Contig_51 673528..673707 -
exon_8828_2	exon_8828_2	Tribonema minus UTEX_B_3156	exon	Contig_51 674057..674329 -
exon_8828_1	exon_8828_1	Tribonema minus UTEX_B_3156	exon	Contig_51 674649..674828 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8828	CDS_8828	Tribonema minus UTEX_B_3156	CDS	Contig_51 674649..674828 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_51:672893..674828-
coding sequence from alignment at Contig_51:672893..674828-

spliced messenger RNA

>mRNA_8828 ID=mRNA_8828|Name=jgi.p|Trimin1|167482|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=921bp|location=Sequence derived from alignment at Contig_51:672893..674828- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCACTCGACGACTCACGGTCCCGCCCGCGTCCTGCCCTCGCCGCA
GTGCCACGCGGAGATGTGCACGCTGCGCGACGACGCATCCCTGGTGGCGC
GGCGGCGGCACTACCACGCGCGCTGCGAGCACCGCCACAGCACCGGCCCC
AAGACGGGCATGCGCTTCCACCACCACCAGCTCGAGAAGATCCGCAAGCA
CCAGTCGGCGCACGCCGCGGAGGCGAGCCGCGACCGCGGCGGCGCGCCGC
ACCTCGACCCCTCCATGATGGCAGAGCTCAACAGCCACGGCATCGAGCTC
CACAACCCCGAGGCGTGGCCGCCCGAGGCGACGCGCCACCTGGACACGCT
CGTGCGCGGCCCCGTCGGGCGCCCCAGCTCGGCGTGGGGCGAGTTCCCGC
GCGCGCTTGCGGCGGCGCTGCCGGGCTTCACCGTCAGCCCGCAGCAGTGC
CTGCTGCACTGGCGCCTCGTCATCAACAACGGCGGCGCCGTCACGGGCGT
GCGCACGTGGAGCGACGTGGAGGACGCGCGGCTCAACTCGCTTGTCAACA
TGTTCGGCACCAAGTGGAGCGCCGTCGCGCAGCTCCTGCCCGGGCGCGAG
CCCAAGCAGTGCCGCGAGCGCTTCCTCAACGTGGTCGACCCCAGCAAGAC
GCGGAAGGCCTGGACGCCGGAAGAAGACGAGCTGCTGCTGCGCGTGCACG
ACCGCGTCCGCAACCAGTTTGCGCGCACGGCCAAGTACTTCTCGGACCGC
AGCTACAACGAGGTGCGCCCTAGTCGTGTTCAATGTGTTGCGGCGCCTCC
TCTCTCATCCATTGCGCGGATTATACAAATTGTGTATGCCTGGGGAAGGA
TGTGTAGTCAACCAGGTTGCGCACACGGCCAAGTACTTCTCGGACCGCAG
CTACAACGAGGTGCGCCCTAG

protein sequence of jgi.p|Trimin1|167482

>Trimin1|167482|e_gw1.51.74.1 ID=Trimin1|167482|e_gw1.51.74.1|Name=jgi.p|Trimin1|167482|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=307bp
MYHSTTHGPARVLPSPQCHAEMCTLRDDASLVARRRHYHARCEHRHSTGP
KTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPHLDPSMMAELNSHGIEL
HNPEAWPPEATRHLDTLVRGPVGRPSSAWGEFPRALAAALPGFTVSPQQC
LLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGRE
PKQCRERFLNVVDPSKTRKAWTPEEDELLLRVHDRVRNQFARTAKYFSDR
SYNEVRPSRVQCVAAPPLSSIARIIQIVYAWGRMCSQPGCAHGQVLLGPQ
LQRGAP*

mRNA from alignment at Contig_51:672893..674828-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8828 ID=mRNA_8828|Name=jgi.p|Trimin1|167482|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1936bp|location=Sequence derived from alignment at Contig_51:672893..674828- (Tribonema minus UTEX_B_3156 )
ATGTATCACTCGACGACTCACGGTCCCGCCCGCGTCCTGCCCTCGCCGCA
GTGCCACGCGGAGATGTGCACGCTGCGCGACGACGCATCCCTGGTGGCGC
GGCGGCGGCACTACCACGCGCGCTGCGAGCACCGCCACAGCACCGGCCCC
AAGACGGGCATGCGCTTCCACCACCACCAGGTGAGCGGAGCAGTCCATGC
TGCGAACGCGCTGCTGCGGCGCCGCGCTGCTTGTCATGAGTGCGCCATGA
TTCATCATGCGTCGATGCTGTTTTCGTGCTCTGGCATCTCAGCTGCTTGC
AGTGGCTGGCAGCATTGGTGTTTTGTCCACCTTCTTCTGCCACGCGTCAT
GACGTCACAGCGCGCCAGTTACGACGCGTCGGCGTCACCCACACCTGCCA
GCAACGTGCCCCACATATCATGTCATCACACAAGGCGAACCGCCACTCCG
CGTACCTCACATCACCCTTCCCCCCCTCCTCCCCCCCCCCCCCCCCCAGC
TCGAGAAGATCCGCAAGCACCAGTCGGCGCACGCCGCGGAGGCGAGCCGC
GACCGCGGCGGCGCGCCGCACCTCGACCCCTCCATGATGGCAGAGCTCAA
CAGCCACGGCATCGAGCTCCACAACCCCGAGGCGTGGCCGCCCGAGGCGA
CGCGCCACCTGGACACGCTCGTGCGCGGCCCCGTCGGGCGCCCCAGCTCG
GCGTGGGGCGAGTTCCCGCGCGCGCTTGCGGCGGCGCTGCCGGGCTTCAC
CGTCAGCCCGCAGCAGTGCCTGGTGAGAGCGCGCGCGTGCGCGTGCGCGT
GATTTGCCCGTAGCGTTGTTGGTGAACGGTGCGTGTGCCGCGGCGTGCGG
CGCGTCGGTCCAGGGGCGACGGCGCGCGCATGCTGCCGAGTGCGCAGCAG
CGTGGACAGCATACATAGCATGTGATGCGTGAGTTTAGAGCGCAGCGCTC
AGCAATTTCCCGCTTACCCGAGCGGTCGTACCTACAGGTCACCAGACTCT
GCCCGCGCGTTTGTTTCATTGCATGGGACTCGCCCGCGCAGCCAGCCGCC
CCTCCGCTCGCGACACGCCGCTGACCCGCCTCCCCCTCTCTCGTGAACCC
CCGCGCCGCCGCCGCCCGCAGCTGCACTGGCGCCTCGTCATCAACAACGG
CGGCGCCGTCACGGGCGTGCGCACGTGGAGCGACGTGGAGGACGCGCGGC
TCAACTCGCTTGTCAACATGTTCGGCACCAAGTGGAGCGCCGTCGCGCAG
CTCCTGCCCGGGCGCGAGCCCAAGCAGTGCCGCGAGCGCTTCCTCAACGT
GGTGAGTGCGAACGGCGCGCACGGGCGTTGGCGATGTGCGCCAGCATTGC
GCCGCGACGCGTCAGCCATGCGATGGCGCAGAGCACGTGCACAGCGTTTG
CAGCACCGCTGACTCGGACGGTTTGCGCTTGTGAGCTCTCAGGCGTCCTC
TTAAACAGAGGCCATGTGCGATGTGATCGCAGCCCGTCAGCAACGCAGTG
TGCGGCACTGGCGTCAGCGCGCTGCCCTCAGGGATTGCACCGCGTGCACT
GCAGCGCCACTTCAAATCTTCAACTCTGAGGTTCCGCCACTCAGACGCAG
ACCTGTCTCACGTGCCCCCGCTGCGTCGGGCCGCCGCCGCCGCCGCAGGT
CGACCCCAGCAAGACGCGGAAGGCCTGGACGCCGGAAGAAGACGAGCTGC
TGCTGCGCGTGCACGACCGCGTCCGCAACCAGTTTGCGCGCACGGCCAAG
TACTTCTCGGACCGCAGCTACAACGAGGTGCGCCCTAGTCGTGTTCAATG
TGTTGCGGCGCCTCCTCTCTCATCCATTGCGCGGATTATACAAATTGTGT
ATGCCTGGGGAAGGATGTGTAGTCAACCAGGTTGCGCACACGGCCAAGTA
CTTCTCGGACCGCAGCTACAACGAGGTGCGCCCTAG

Coding sequence (CDS) from alignment at Contig_51:672893..674828-

>mRNA_8828 ID=mRNA_8828|Name=jgi.p|Trimin1|167482|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=921bp|location=Sequence derived from alignment at Contig_51:672893..674828- (Tribonema minus UTEX_B_3156 )
ATGTATCACTCGACGACTCACGGTCCCGCCCGCGTCCTGCCCTCGCCGCA
GTGCCACGCGGAGATGTGCACGCTGCGCGACGACGCATCCCTGGTGGCGC
GGCGGCGGCACTACCACGCGCGCTGCGAGCACCGCCACAGCACCGGCCCC
AAGACGGGCATGCGCTTCCACCACCACCAGCTCGAGAAGATCCGCAAGCA
CCAGTCGGCGCACGCCGCGGAGGCGAGCCGCGACCGCGGCGGCGCGCCGC
ACCTCGACCCCTCCATGATGGCAGAGCTCAACAGCCACGGCATCGAGCTC
CACAACCCCGAGGCGTGGCCGCCCGAGGCGACGCGCCACCTGGACACGCT
CGTGCGCGGCCCCGTCGGGCGCCCCAGCTCGGCGTGGGGCGAGTTCCCGC
GCGCGCTTGCGGCGGCGCTGCCGGGCTTCACCGTCAGCCCGCAGCAGTGC
CTGCTGCACTGGCGCCTCGTCATCAACAACGGCGGCGCCGTCACGGGCGT
GCGCACGTGGAGCGACGTGGAGGACGCGCGGCTCAACTCGCTTGTCAACA
TGTTCGGCACCAAGTGGAGCGCCGTCGCGCAGCTCCTGCCCGGGCGCGAG
CCCAAGCAGTGCCGCGAGCGCTTCCTCAACGTGGTCGACCCCAGCAAGAC
GCGGAAGGCCTGGACGCCGGAAGAAGACGAGCTGCTGCTGCGCGTGCACG
ACCGCGTCCGCAACCAGTTTGCGCGCACGGCCAAGTACTTCTCGGACCGC
AGCTACAACGAGGTGCGCCCTAGTCGTGTTCAATGTGTTGCGGCGCCTCC
TCTCTCATCCATTGCGCGGATTATACAAATTGTGTATGCCTGGGGAAGGA
TGTGTAGTCAACCAGGTTGCGCACACGGCCAAGTACTTCTCGGACCGCAG
CTACAACGAGGTGCGCCCTAG