mRNA_8800 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A835YZN2_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN2_9STRA) HSP 1 Score: 588 bits (1515), Expect = 2.610e-211 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1
Query: 1 MAPGGAGRLVRAGVQELAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANPPAPQGPQAYTVMGISGLLPRLGLPALSGPVPTTRRRGQFVDGE 891
MAPGGAGRLVRAGVQELAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANPPAPQGPQAYTVMGISGLLPRLGLPALSGPVPTTRRRGQFVDGE
Sbjct: 1 MAPGGAGRLVRAGVQELAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANPPAPQGPQAYTVMGISGLLPRLGLPALSGPVPTTRRRGQFVDGE 297
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7S2G2K6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2K6_9STRA) HSP 1 Score: 200 bits (508), Expect = 8.140e-58 Identity = 108/259 (41.70%), Postives = 153/259 (59.07%), Query Frame = 1
Query: 49 LAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANP-----PAPQGPQAYTVMGISG 810
L P+ P+LITFDA GTL+QLA P G+ R+ L+K G RLP PD+F A+ + +A A PC+GC +++ WW VV D + PS+++DP+ LFDEL++E FTG + +EL D L+KL EW+E G GP LG+++N DERLP +L LGI + FD ++TS++ G E P R IFD+AL + G+ A+H G+D + D+ GA AAGW + + P PA +TV+G G
Sbjct: 83 LPPPITQKPQLITFDATGTLIQLAEPVGMHYRQVLMKHTGI--RLPRPDIFTD---AFKEVYDAKCQASPCFGCSDSISAQDWWASVVRDTYTKVGV-----PSDIIDPLFPLLFDELYHEVFTGTDGWELNADTMMVLDKLKEWQETGDGPRLGVISNFDERLPKLLEALGIADYFDIIITSKECGMEKPCRQIFDIALTRLGIYERDAAVHVGNDYDTDVKGATAAGWNALYVKEPAYTNLPAQTTDTPFTVVGDLG 331
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7S2STH1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STH1_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.040e-49 Identity = 105/250 (42.00%), Postives = 147/250 (58.80%), Query Frame = 1
Query: 34 AGVQELAVPLPP---APKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWRE--AGTGPL-LGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANPP 765
A VQ+ P PP P+++TFDA GTL+QL P G+ RE+LL+A G RLP PD F A A+ + A + PC+GCG + S WWY VV D ++T P +++DP++ E+FD L+ F G E +EL A L+ L E +E A PL LG+++N DERL +L NLGI FD VLTS++ E P IFD+AL + G+ + + A+H GD ++D+ GAA AGW + + PP
Sbjct: 85 ASVQKAWTPGPPKILTPRVVTFDATGTLMQLTEPVGMHYREALLQASGL--RLPSPDHFDA---AFKEVYKAQSEEFPCFGCGAAMPSRDWWYPVVRDTYLKTGV-----PEKILDPLLPEIFDSLYDNVFAGSEGWELNEQAIYVLDTLIELKESRAEDDPLYLGVISNFDERLHKLLDNLGIAHYFDIVLTSKECCVEKPNSPIFDMALSRLGIYDRSRAVHIGDTFDKDVAGAARAGWNAIFVRAPP 324
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7S2PCP1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCP1_9STRA) HSP 1 Score: 168 bits (425), Expect = 3.840e-45 Identity = 108/292 (36.99%), Postives = 158/292 (54.11%), Query Frame = 1
Query: 64 PPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYD--ALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIA-----NPPAPQGPQA--------YTVMGISGLLPRLGLPALSGPVPTTR---RRGQFVD 885
P P+LITFDA TL+QL S G+ R L +A + +RLP P +F + A+++A PC+GCG G+TS +WW ALVE ++ M P+ + + + L+ + F EA+EL+P L + WRE G GP L +++N DERL ++L +G+ + FDFVLTSR+IGSE P R+ F+VA+ +AG+ + + +H GD + D+ GA+ AGW S I + P P + V+ I GL P L +PTTR RG F+D
Sbjct: 86 PNVPQLITFDATDTLIQLKSEVGMTYRLILHEATRFRSRLPTPAVFTS---AFNQAFTETNEKYPCFGCGLGMTSREWWAECTKRTYALVEHIDYERGLRDRMDGPLGDAVAEVLYNQVFASTEAWELKPGVLDALSRFKMWREEG-GPQLAVLSNFDERLHSILDQVGVADAFDFVLTSREIGSEKPNRSAFEVAMSRAGVADPSLCMHVGDGFDSDVVGASNAGWHSVWIPPINGDDVPTNIDPDLMFSMCGDLFAVLDIFGLDPHFRL------IPTTRFVDERGNFMD 367
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7S1C225_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C225_9STRA) HSP 1 Score: 167 bits (424), Expect = 1.100e-44 Identity = 106/233 (45.49%), Postives = 137/233 (58.80%), Query Frame = 1
Query: 76 KLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDA------------LVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGW 738
KLITFDA GTL+++ + G+ RE+L +A GY+ RLP PDLF A A+ +A AA PCYG G+T +WW VV D LVE LE+ + V E +F +L+ E FTG EA+EL PDA RTL +LA WRE G GP +GIV+N+D RL +L LGI E FDFVLT+ GS P +F +AL +A + + A H G+D +D AA AGW
Sbjct: 129 KLITFDAVGTLIRMTTSVGMFYREALNQAFGYV-RLPRPDLFTA---AFREAHRQQNAAYPCYGKNDGMTGEEWWRTVVRDTYRNMYDLFDDADLVEELESED-------GEVFEAVFQQLYNEDFTGEEAWELLPDAYRTLRRLALWREQG-GPRIGIVSNSDARLSRILYALGIEEYFDFVLTAEGTGSAKPDGDMFRIALREAQVEDPRLAAHVGNDFGKDCRCAAEAGW 349
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A7R9U3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3B9_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.940e-42 Identity = 103/249 (41.37%), Postives = 142/249 (57.03%), Query Frame = 1
Query: 67 PAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVV---YDALVETL-----EAHNIPPSEMVDPVMEELFDELFYETFT-GPEA--YELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLT-------NAAEALHCGDDLERDIGGAAAAGWQSCLIAN 759
P PKLITFDA GTL+QL S G+I R++LL+ H RLP PD+F A+ +A + A PC+GCG+G+ S WW V+ YD++ + E E + VME LF +L++ F GP +ELRP L+ L G G LG+++N D+RLP +L +LGI + FDFVLTSR+ G E P++ +FD+A + GL+ E LH GD L D+ GA AGWQS I++
Sbjct: 276 PRPKLITFDATGTLMQLRSHIGVIYRDTLLE-HATTLRLPRPDVFSI---AFKEAYASQCKAMPCFGCGSGIASFDWWRPVMQGTYDSVFSSFGVTDEEVAEAGGMESKEEVMEMLFQDLYFNIFAKGPPEGMWELRPGVEAVLQNLRSAESCG-GLRLGVLSNFDDRLPGILESLGIAKYFDFVLTSREAGQEKPSQVMFDLARNALGLSADGSGPIETRECLHAGDTLGTDVRGALDAGWQSAFISD 519
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A8J5XU42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU42_DIALT) HSP 1 Score: 133 bits (334), Expect = 1.630e-32 Identity = 103/297 (34.68%), Postives = 156/297 (52.53%), Query Frame = 1
Query: 49 LAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAA-----------YDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWR-EAGTGPL-LGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNA----AEALHCGDDLERDIGGAAAAGWQSCLIANPPA--PQGPQAYTVMGIS--------GLLPRL-GLPALSGPVP 855
LAV P+L+TFDA GTL+++ P G I R++L+ + DL A AA + +A A AA PC+G G+ ++S WW VV +A V + + +EM P+ LF L YE+F +EL +A +++LA WR + G L +G+++N D+RLP +L +LG+ FDFVLTSR+ G E P R+IF+ A ++AGL +H GD D+ GA+ AGW++ +A+ A P+A+ M + G +PR+ G PA + P
Sbjct: 2 LAVVAATRPRLVTFDATGTLMRVQRPVGAIYRDALISSLSASKLARTADLSAAELAACNVDPVAIGRAFGRAYAAQCAAHPCFGAGS-LSSRDWWSSVVREAFVGAGVSEAVVRAEM--PL---LFPTL-YESFASTATWELLDASAGVVQQLARWRAQLPPGELTIGVISNFDDRLPALLNSLGLGRYFDFVLTSREHGDEKPCRSIFERASERAGLATVDVSPRTCVHVGDTFGTDVLGASRAGWRAVFVASDDALGELMPEAFVAMAETEHERIPSLGFVPRIVGAPAATALPP 291
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A812QRQ7_SYMMI (Hdhd3 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812QRQ7_SYMMI) HSP 1 Score: 130 bits (327), Expect = 9.430e-32 Identity = 86/231 (37.23%), Postives = 127/231 (54.98%), Query Frame = 1
Query: 73 PKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQ----PCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLI 753
P+LI+ D+ GTL+++ P G + ++L + PD+ Q S A + A + Q P +G G G +WW VV T+ I S++ + E +FD+L+ F G EA+EL P R+LE L EW A +LG+++N D+RL +L NLGIL+ FDFVLTS + +E P+ IF AL+ AGL + ALHCGD +RD+ GA + W + L+
Sbjct: 48 PRLISLDSTGTLMRVRRPIGDLYADALHRVR--------PDV-QVSAAEMTRVFPAIFSRQSSLSPSFGAG-GCGCREWWRAVVEG----TMGGAGIAVSDLGES-FEAVFDDLYGHVFCGQEAWELLPRTVRSLESLREWC-AANDCVLGVMSNMDDRLSVILQNLGILDKFDFVLTSYEARAEKPSAIIFTKALEVAGLAPTSHALHCGDSYKRDLIGATSVNWMAVLV 262
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A1Q9ERX8_SYMMI (Haloacid dehalogenase-like hydrolase domain-containing protein 3 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9ERX8_SYMMI) HSP 1 Score: 130 bits (327), Expect = 9.040e-30 Identity = 86/231 (37.23%), Postives = 127/231 (54.98%), Query Frame = 1
Query: 73 PKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQ----PCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLI 753
P+LI+ D+ GTL+++ P G + ++L + PD+ Q S A + A + Q P +G G G +WW VV T+ I S++ + E +FD+L+ F G EA+EL P R+LE L EW A +LG+++N D+RL +L NLGIL+ FDFVLTS + +E P+ IF AL+ AGL + ALHCGD +RD+ GA + W + L+
Sbjct: 545 PRLISLDSTGTLMRVRRPIGDLYADALHRVR--------PDV-QVSAAEMTRVFPAIFSRQSSLSPSFGAG-GCGCREWWRAVVEG----TMGGAGIAVSDLGES-FEAVFDDLYGHVFCGQEAWELLPRTVRSLESLREWC-AANDCVLGVMSNMDDRLSVILQNLGILDKFDFVLTSYEARAEKPSAIIFTKALEVAGLAPTSHALHCGDSYKRDLIGATSVNWMAVLV 759
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A812J2P4_9DINO (HDHD3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812J2P4_9DINO) HSP 1 Score: 127 bits (318), Expect = 1.500e-28 Identity = 85/231 (36.80%), Postives = 125/231 (54.11%), Query Frame = 1
Query: 73 PKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQ----PCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLI 753
P+LIT D+ GTL+++ P G + ++L + PD+ Q S + +A A + Q P +G G +WW VV T+ I S + D + +FD+L+ + F+G A+EL P+ R+LE L W A L G+++N D RL +L NLGIL+ FDFVLTS +E P+ IF AL+ AGL ++ALHCGD +RD+ GA A W + L+
Sbjct: 701 PRLITLDSTGTLMRVRKPIGDLYVDALRRVR--------PDI-QVSASEMTRAFPIAFSRQSSLSPSFGAD-GPGCREWWRAVVEG----TMAGAGITVSNL-DESFDAIFDDLYGKVFSGKAAWELLPNTLRSLESLRTWCSANDCRL-GVMSNMDSRLSLILQNLGILQNFDFVLTSYDARAEKPSPIIFHKALEAAGLAPTSQALHCGDSFKRDLLGATAVNWMAALV 915
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Match: A0A835YS88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS88_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 7.050e-22 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3
Query: 3 AAAVIPFPTCLQRRRSRDVDGRCGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRDGRLSXXXXXXXXXXVTGLPAAAGQLAKWSR 290
AAAVIPFPTCLQRRRSRDVDGRCGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRDGRLSXXXXXXXXXXVTGLPAAAGQLAKWSR
Sbjct: 1 AAAVIPFPTCLQRRRSRDVDGRCGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRDGRLSXXXXXXXXXXVTGLPAAAGQLAKWSR 96 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|349894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8800 ID=mRNA_8800|Name=jgi.p|Trimin1|349894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1027bp|location=Sequence derived from alignment at Contig_51:490077..493364- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGCCGGGCGGCGCGGGGAGGCTGGTGAGGGCTGGCGTGCAGGAGTTback to top protein sequence of jgi.p|Trimin1|349894 >Trimin1|349894|estExt_Genemark1.C_Ctg_510041 ID=Trimin1|349894|estExt_Genemark1.C_Ctg_510041|Name=jgi.p|Trimin1|349894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=298bp MAPGGAGRLVRAGVQELAVPLPPAPKLITFDAEGTLLQLASPKGLILRESback to top mRNA from alignment at Contig_51:490077..493364- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8800 ID=mRNA_8800|Name=jgi.p|Trimin1|349894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3288bp|location=Sequence derived from alignment at Contig_51:490077..493364- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_51:490077..493364- >mRNA_8800 ID=mRNA_8800|Name=jgi.p|Trimin1|349894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=894bp|location=Sequence derived from alignment at Contig_51:490077..493364- (Tribonema minus UTEX_B_3156 )back to top |