mRNA_8739 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350379
Unique NamemRNA_8739
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: A0A836CBN8_9STRA (Riboflavin biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN8_9STRA)

HSP 1 Score: 500 bits (1287), Expect = 4.140e-178
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
Query:  148 MAANGGAASSRPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPEDGCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 891
            MAANGGAASSRPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPEDGCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP
Sbjct:    1 MAANGGAASSRPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPEDGCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 248          
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: D7FMH2_ECTSI (RibD_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH2_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 5.870e-79
Identity = 142/269 (52.79%), Postives = 175/269 (65.06%), Query Frame = 1
Query:  163 GAASSRPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQ-QQPLRVVLDRNLRIPEADQCQ----LLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPED---------------------GCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 891
            G     P VTLKLA+D+ GAVDD SE PKRFTS  SLDAVHR+RRD  AV+VGV TVVRD+PSLTVRRVPL  GQ +QP RVVLDR LR+  A   Q    +L DGH ++++F +      +ARAAEL   V      + D P +T  D                     G  L  V+  L +RGI H++VEGGP +AR FLS++LVDRAII++AP++F +PVPS I    LR AGLEL+G T+WG DE ECW++PGL WP GGVG+WP
Sbjct:  141 GRGRGMPSVTLKLAMDRNGAVDDMSEGPKRFTSPASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNGGQTRQPTRVVLDRTLRLTGAQAGQNPRAILRDGH-SSLVFYSAGCEDTEARAAELKADVKRSRTAVSDSPGETEPDTSHQKLAPVDFVGMPVQRPGAGVDLSGVLGALLERGIDHVLVEGGPSVARGFLSERLVDRAIIIRAPMEFVRPVPSDIATDTLRRAGLELVGCTKWGDDEAECWTRPGLGWPGGGVGSWP 408          
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: I2CPJ6_NANGC (Riboflavin biosynthesis protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ6_NANGC)

HSP 1 Score: 234 bits (597), Expect = 4.120e-73
Identity = 133/242 (54.96%), Postives = 166/242 (68.60%), Query Frame = 1
Query:  178 RPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDI--PTDTPEDGCPLLTVVRFLGQRGI-SHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQ-QPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 891
            RP VT+KLAVD++GAVDD +  P RFT   SLDAVHRLRR++ AVVVGVETVVRD+PSLTVRRVPL   Q+QP+RVVLDR+LRIP +    LL+D H T V +   P   +  RAA++MLS    PV+ID I  P   PED  PLL V+  L   G+  HIMVEGGP  A+ FL    VDRA+I +A ++F+  P+PSG+D +VL+ AGL  LG+   G D V CWS+P L WP   + +WP
Sbjct:   20 RPRVTVKLAVDRKGAVDDATLKPGRFTCEASLDAVHRLRRESEAVVVGVETVVRDDPSLTVRRVPLRPDQRQPIRVVLDRSLRIPYSST--LLNDRHRTLVYYVQGPWRHM--RAADIMLSKFVAPVLIDCINEPELRPEDPAPLLEVLGRLYDMGVREHIMVEGGPRTAKAFLDAACVDRAVIFEAAMEFKGDPIPSGVDENVLKKAGLMYLGSYPSGVDMVHCWSRPDLPWPAQELSDWP 257          
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: A0A6U6BWZ9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U6BWZ9_GUITH)

HSP 1 Score: 218 bits (555), Expect = 4.800e-66
Identity = 120/240 (50.00%), Postives = 164/240 (68.33%), Query Frame = 1
Query:  181 PLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPED-GCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQ-PVPSGIDHSVLRSAGLELLGTTQ-WGPDEVECWSKPGLEWPNGGVGNWP 891
            P+VTLK+A+D+ GAVDD     KRFTS +SLDAVHRLRR + AV+VG+ TVVRD+PSLTVRRVPLL+G++QPLR V+D +L+I EA  C+++ DG+ T +  +++    V  R  +L +S L     +  IPT T +     L +++  L   G+  +M+EGGP   ++FL  +LVDRAI++ AP+KF Q PVPS IDH VL++AGL LLG  Q WG D V  WSK  L+WP+  +  WP
Sbjct:   78 PIVTLKIALDENGAVDDLGITSKRFTSEQSLDAVHRLRRCSDAVLVGIGTVVRDDPSLTVRRVPLLEGREQPLRAVIDPSLKI-EA-HCKVMRDGYKTVIFHSDSDE--VDKRRIQL-ISELEATNQVSFIPTPTNQHRSLDLTSILGELSNLGVKELMLEGGPATVKRFLQQKLVDRAIVIVAPIKFDQLPVPSLIDHHVLKAAGLALLGEHQDWGKDSVSLWSKAQLQWPSPVISEWP 312          
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: A0A832V5V4_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=2 Tax=Archaea TaxID=2157 RepID=A0A832V5V4_9ARCH)

HSP 1 Score: 192 bits (489), Expect = 2.280e-55
Identity = 108/237 (45.57%), Postives = 144/237 (60.76%), Query Frame = 1
Query:  181 PLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPEDGCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 891
            PLVTLK+A+D+ GAVDDR+E   RFTS ESLDAVHRLR+D  A++VGV TV+RDNPSLTVRR+ L +G+Q PLRVVLDR L+ P  D   +++D H T +         V+ R  ++        V +  + +     G  L  ++  LG RG   +++EGGP  AR+FL+ + VDR +++KA V F QP P  +      +AGL+ L    WG D V  WSK GL WP   V  WP
Sbjct:  156 PLVTLKVAIDKNGAVDDRAEDSFRFTSQESLDAVHRLRKDVDAIIVGVGTVLRDNPSLTVRRIELGEGKQ-PLRVVLDRELKTP-IDSI-IVNDDHDTLIFH-------VEGREEKIAALNSRNNVEVHKLQSARNHSGVDLHLLLSLLGDRGYQEVLLEGGPETARRFLAAETVDRVVLIKADVDFSQPFPLSLGDEDFSAAGLQRLSDVHWGVDTVSRWSKAGLGWP---VDGWP 379          
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: A0A2E0K0L6_9EURY (Riboflavin biosynthesis protein RibD n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E0K0L6_9EURY)

HSP 1 Score: 191 bits (484), Expect = 8.390e-55
Identity = 109/238 (45.80%), Postives = 146/238 (61.34%), Query Frame = 1
Query:  178 RPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPEDGCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 891
            RPLVTLK A+D  G VD   E+P RFTS ESLDAVHRLRR   A++VGV T++RDNPSL VRRVP+ +G+Q PLR+VLDRNLRIP  D+ ++L+DG  T ++ T      V      ++ S +G               G  L+ ++  LG RGI  ++VEGGP + +QF+ + LVDRAI++++     +   SGI  S L  AGL L+  T WG D V+ WS+  L WP   +  WP
Sbjct:  155 RPLVTLKAAMDANGVVD--GESPGRFTSEESLDAVHRLRRHCDAILVGVNTIIRDNPSLNVRRVPIGEGKQ-PLRIVLDRNLRIP--DEVEVLTDGGETILVHTQLTDRGV------MLPSGMG---------------GVDLVALLEHLGDRGIQELLVEGGPIVWKQFIDEGLVDRAIVIQSQTLLGEGPASGISDSKLNDAGLNLIEQTTWGDDSVQFWSRTELPWP---MDLWP 363          
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: A0A842P3K4_9EURY (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A842P3K4_9EURY)

HSP 1 Score: 189 bits (481), Expect = 2.600e-54
Identity = 103/237 (43.46%), Postives = 144/237 (60.76%), Query Frame = 1
Query:  181 PLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPEDGCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 891
            PLVTLK+AVD  GAVDDR+E   RFTS ESL+AVHRLR+D  A++VG+ T++RDNPSLTVRR+ +  G+Q PLRV+LDR L+ P      +++DGH T +L        V+ R  E+        V +  + +     G  L  ++  LG RG   +++EGGP  AR+F++  LVDR II++   +F Q  P  +     R+AGL  LG ++WG D V+ WS+  L WP     +WP
Sbjct:  144 PLVTLKIAVDSNGAVDDRAEDSFRFTSEESLNAVHRLRKDVDAIIVGIGTIIRDNPSLTVRRIEMGLGKQ-PLRVILDRELKTPL--DSTIVNDGHNTLILH-------VEGREGEIAALDSRETVEVQKLQSARSHSGVDLHLLLSLLGDRGFQEVLLEGGPETARRFIAAGLVDRLIIIQTKAQFSQGFPLSLGDDDFRNAGLVRLGDSEWGGDSVQRWSREDLNWP---AEDWP 367          
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: A0A7C7HSY4_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=4 Tax=Archaea TaxID=2157 RepID=A0A7C7HSY4_9ARCH)

HSP 1 Score: 189 bits (479), Expect = 6.640e-54
Identity = 109/238 (45.80%), Postives = 143/238 (60.08%), Query Frame = 1
Query:  178 RPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPEDGCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 891
            RPLVTLK+A D+ GAVDD + A KRFTS +SLDAVHRLRRD  A+++GVET+VRDNPSLTVRR+ L  G+Q P+R++LDR LR P      +L+D H T +L T      + A ++   + V+ L        +    +G  L  V+  LG R    IMVEGG   AR+FL+  L+DRAII++   +F  P+  GI+   L    L +     WG D V+ WSK  LEWP     NWP
Sbjct:  153 RPLVTLKIATDRNGAVDDLALASKRFTSPDSLDAVHRLRRDCDAIIIGVETIVRDNPSLTVRRIELGHGRQ-PVRIILDRALRTPL--DSTVLADEHQTMILHTEGEYENITALSSRENVEVVCL-------KSADSHNGVDLNRVLALLGDREFQEIMVEGGAETARRFLAAGLIDRAIIIRTEDEFTTPLTLGIESDHLIDKDLAIYREVDWGGDRVQLWSKEKLEWP---CPNWP 377          
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: A0A7S2LDW0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LDW0_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.890e-53
Identity = 107/242 (44.21%), Postives = 150/242 (61.98%), Query Frame = 1
Query:  187 VTLKLAVDQQ---GAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPEDGCPLLT---VVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPN-GGVGNWP 891
            VTLK+A D     G  D      +RFTS ESLD VHRLRRD+ AV+VG  TV  D+ SL+VRRV L +GQ+QP+RV+LD +L +   +   + +DG  T V ++ +               V+ +P+   D   D   D  P L+   +V+ L  RG++HIMVEGGP  AR FL   +VDRAI+V+APV+FQ+PVP+ +D   +++AGL ++GTT+ G D VE W++ GLEWPN   + +WP
Sbjct:   63 VTLKMAFDSSPVWGVADLSETKSERFTSPESLDMVHRLRRDSSAVLVGRGTVEFDDCSLSVRRVELGEGQEQPVRVILDPSLSLVGGEYA-IFNDGLRTIVYYSQSAAQNKDVPLPSSDDCVIFVPLAQSD---DEKNDKIPSLSPSEIVQDLATRGLTHIMVEGGPATARAFLHSGVVDRAILVRAPVEFQEPVPAQMDEDTMKTAGLNMIGTTEMGGDVVEYWTREGLEWPNPDDLSSWP 300          
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Match: A0A7S2UU33_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU33_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.100e-52
Identity = 100/206 (48.54%), Postives = 129/206 (62.62%), Query Frame = 1
Query:  337 RDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLF----------TNTPGTFVK----ARAAELMLSVLGLPVMIDDIPTDTP---EDGCPLLTVV-RFLGQRGI---SHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 891
            RDNPSLTVRRVPL + Q+ P+RVVLD  L I E ++  +L DG+PT V F          TNT G   +     +AA LML  LG PV   ++P D     +DG  +L  +   LG  G+   S +M+EGGP  A++FLS   + RAII+KA V+F+ PVPSGID  VL+SAGLE +GTT++GPD   CW K G EWP GG+ +WP
Sbjct:    1 RDNPSLTVRRVPLDEDQRPPVRVVLDGRLSIAENEEVNVLKDGNPTIVFFSEMPTQAEQPTNTQGETYEFTRYGQAANLMLGCLGAPVAFKELPLDRSNSFKDGNFMLDAMWNELGAMGMARNSRVMLEGGPETAKKFLSQGQITRAIIIKADVEFKDPVPSGIDEEVLKSAGLEFVGTTKYGPDTAYCWKKAGTEWPQGGIESWP 206          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350379 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBN8_9STRA4.140e-178100.00Riboflavin biosynthesis protein n=1 Tax=Tribonema ... [more]
D7FMH2_ECTSI5.870e-7952.79RibD_C domain-containing protein n=1 Tax=Ectocarpu... [more]
I2CPJ6_NANGC4.120e-7354.96Riboflavin biosynthesis protein n=1 Tax=Nannochlor... [more]
A0A6U6BWZ9_GUITH4.800e-6650.00Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A832V5V4_9ARCH2.280e-5545.57Bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
A0A2E0K0L6_9EURY8.390e-5545.80Riboflavin biosynthesis protein RibD n=1 Tax=Eurya... [more]
A0A842P3K4_9EURY2.600e-5443.46Bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
A0A7C7HSY4_9ARCH6.640e-5445.80Bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
A0A7S2LDW0_9STRA1.890e-5344.21Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2UU33_9STRA2.100e-5248.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_61contigContig_61:618540..620511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350379|estExt_Genemark1.C_Ctg_610074
DescriptionRibD C-terminal domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CYVK@1|root,2S6R1@2759|Eukaryota
Evalue1.17e-80
Seed ortholog2880.D7FMH2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBacterial bifunctional deaminase-reductase, C-terminal
Ec32 orthologEc-23_000290.1
TranscriptId350701
TrackFilteredModels1
ProteinId350379
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350379gene_8739Tribonema minus UTEX_B_3156 geneContig_61 618540..620511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350379Trimin1|350379|estExt_Genemark1.C_Ctg_610074Tribonema minus UTEX_B_3156 polypeptideContig_61 618540..620364 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8739_2exon_8739_2Tribonema minus UTEX_B_3156 exonContig_61 618540..618842 -
exon_8739_1exon_8739_1Tribonema minus UTEX_B_3156 exonContig_61 619921..620511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8739CDS_8739Tribonema minus UTEX_B_3156 CDSContig_61 619921..620364 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_8739UTR5_8739Tribonema minus UTEX_B_3156 five_prime_UTRContig_61 620365..620511 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8739 ID=mRNA_8739|Name=jgi.p|Trimin1|350379|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=894bp|location=Sequence derived from alignment at Contig_61:618540..620511- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAAAGTGGCAGTGTTCCGTACTGCTTCTACTAGCGCTCTCAGCCGCCTC
AGCCCTCGTGCCTGGTTCTGCCTGGACCGGCGGCAGCCACAGAATACTGG
CAACTGCAGCACCTCAACATCATCAGCACGCAAGGCGAGCTCTGCACATG
GCCGCCAATGGCGGTGCGGCATCTTCTCGCCCACTGGTCACATTGAAGCT
GGCAGTGGATCAGCAAGGAGCCGTAGACGACAGGAGCGAGGCACCGAAGC
GCTTCACCAGCAGCGAATCGCTTGACGCTGTTCACAGATTGCGCAGGGAC
GCTGGAGCAGTGGTAGTTGGAGTGGAGACCGTAGTGAGAGACAATCCCAG
CCTTACGGTCAGGCGAGTGCCGCTGCTGGACGGACAGCAGCAGCCGCTCA
GGGTTGTTTTGGATCGCAACCTGCGGATCCCTGAGGCTGATCAGTGCCAG
CTGCTTAGCGATGGGCACCCCACAGCGGTGCTGTTCACAAATACCCCAGG
GACATTTGTGAAGGCGAGGGCTGCTGAGCTGATGCTGAGCGTGCTGGGGT
TGCCTGTCATGATCGACGACATTCCTACGGACACACCTGAGGACGGGTGC
CCGCTGCTGACAGTCGTCAGGTTTCTGGGCCAGCGCGGCATCTCACACAT
CATGGTCGAAGGCGGGCCCTGCATCGCGCGCCAGTTCCTCAGCGATCAAC
TGGTGGACAGGGCCATCATCGTCAAAGCGCCGGTAAAGTTCCAGCAGCCC
GTTCCCAGCGGAATAGACCATTCCGTTCTGCGCAGCGCAGGACTGGAGCT
GCTGGGTACCACGCAGTGGGGGCCGGATGAGGTGGAGTGCTGGTCGAAAC
CGGGGTTGGAATGGCCCAATGGAGGGGTGGGAAACTGGCCATAA
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protein sequence of jgi.p|Trimin1|350379

>Trimin1|350379|estExt_Genemark1.C_Ctg_610074 ID=Trimin1|350379|estExt_Genemark1.C_Ctg_610074|Name=jgi.p|Trimin1|350379|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp
MAANGGAASSRPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRR
DAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQC
QLLSDGHPTAVLFTNTPGTFVKARAAELMLSVLGLPVMIDDIPTDTPEDG
CPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQ
PVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP*
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mRNA from alignment at Contig_61:618540..620511-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8739 ID=mRNA_8739|Name=jgi.p|Trimin1|350379|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1972bp|location=Sequence derived from alignment at Contig_61:618540..620511- (Tribonema minus UTEX_B_3156 )
AGAAAGTGGCAGTGTTCCGTACTGCTTCTACTAGCGCTCTCAGCCGCCTC AGCCCTCGTGCCTGGTTCTGCCTGGACCGGCGGCAGCCACAGAATACTGG CAACTGCAGCACCTCAACATCATCAGCACGCAAGGCGAGCTCTGCACATG GCCGCCAATGGCGGTGCGGCATCTTCTCGCCCACTGGTCACATTGAAGCT GGCAGTGGATCAGCAAGGAGCCGTAGACGACAGGAGCGAGGCACCGAAGC GCTTCACCAGCAGCGAATCGCTTGACGCTGTTCACAGATTGCGCAGGGAC GCTGGAGCAGTGGTAGTTGGAGTGGAGACCGTAGTGAGAGACAATCCCAG CCTTACGGTCAGGCGAGTGCCGCTGCTGGACGGACAGCAGCAGCCGCTCA GGGTTGTTTTGGATCGCAACCTGCGGATCCCTGAGGCTGATCAGTGCCAG CTGCTTAGCGATGGGCACCCCACAGCGGTGCTGTTCACAAATACCCCAGG GACATTTGTGAAGGCGAGGGCTGCTGAGCTGATGCTGAGCGTGCTGGGGT TGCCTGTCATGATCGACGACATTCCTACGGACACACCTGAGGTGAGTTGA CTTGATGACAAATGGGTACACCAAAAGTCGGAATTGCAGCAGGACACGAA AGCGTACAAATGCATGCACGGTACAGACATGCGGTGTTTTGACAGGCTTG CAGGTGTATCATTCAGTGTATTGAGCTGCGCGAGCATTGCGACTTGCCTG GAAGTTTGAAGCCACTGTGCTTGTCCTTTTGTATATTGTGAACATCAACA ATGTGTATAGCGCATGTAATACCACTACCACTACAGCTTTGTGTGCATGC AGGCAATTAGCGCGTTGTAATTGCTCTGAGGTAGGCGGCAATGGCTCTTG ACTTGCAATCCACTTGGATATCTTCAACCTGTCAATCCATGTCCTGGCAA CCACAACAGTATGCCTGCTGCCACCAGTAGTGTAACTGCCAGGCTTATTC TTAGTTTGTTGCAATTCGTACTGCTCTAACCACCATGTGTTGAAGCAACG TTCCTCTCATGATTGTCAGAGAAGCCCTCCGCTTAACACTGCTGTCATCA AACATGTTTTTGAAGTGACTCTCCTAGCTTCGTGTACTTCAACACGAACG TGGAGACGCGATCTGCACCGGCGTGCCCTTCTGCATTTATGGCAAAATGC TGGTGCCGCATTGCATGCTGCGCCCTCTTTGACTGGCGTTACCAAGACAG ATTGCTGTAGCTTACTTGTCGGCATTGATTGCTGTGTTCCTTGCTTAACT CGAGGGGCAGATGAATGGGGCGGTGGTTCCGTTGTAAAATGCACGGCATA TCGTGTTGGCCCAAGCAGTGGAGGGGGAGGTTTACCGTTGTTGACAAAGC GATGGCATCCCTGATGAACGTCTACTCGCTTTGGTGTTGGCATCGTACGC TTTGACATTGTTTGCTGCTGCCCAAAACAGCGTGCGGTGCCTGCTGCCAG CTGCGATTGCCTGCGGCAGCACGATATCTTCTGCGACCTGGTGGCAGTAA TTTTTTGCCCCCCCCCCCCCCCCCACACACACACACACACGCACAAATAC CTACAGTACATGCATCATGAAACCAATTCACGGCATGAACCTCTTCACCG CCTGTTGCGCGCAACGCAGGACGGGTGCCCGCTGCTGACAGTCGTCAGGT TTCTGGGCCAGCGCGGCATCTCACACATCATGGTCGAAGGCGGGCCCTGC ATCGCGCGCCAGTTCCTCAGCGATCAACTGGTGGACAGGGCCATCATCGT CAAAGCGCCGGTAAAGTTCCAGCAGCCCGTTCCCAGCGGAATAGACCATT CCGTTCTGCGCAGCGCAGGACTGGAGCTGCTGGGTACCACGCAGTGGGGG CCGGATGAGGTGGAGTGCTGGTCGAAACCGGGGTTGGAATGGCCCAATGG AGGGGTGGGAAACTGGCCATAA
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Coding sequence (CDS) from alignment at Contig_61:618540..620511-

>mRNA_8739 ID=mRNA_8739|Name=jgi.p|Trimin1|350379|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_61:618540..620511- (Tribonema minus UTEX_B_3156 )
ATGGCCGCCAATGGCGGTGCGGCATCTTCTCGCCCACTGGTCACATTGAA
GCTGGCAGTGGATCAGCAAGGAGCCGTAGACGACAGGAGCGAGGCACCGA
AGCGCTTCACCAGCAGCGAATCGCTTGACGCTGTTCACAGATTGCGCAGG
GACGCTGGAGCAGTGGTAGTTGGAGTGGAGACCGTAGTGAGAGACAATCC
CAGCCTTACGGTCAGGCGAGTGCCGCTGCTGGACGGACAGCAGCAGCCGC
TCAGGGTTGTTTTGGATCGCAACCTGCGGATCCCTGAGGCTGATCAGTGC
CAGCTGCTTAGCGATGGGCACCCCACAGCGGTGCTGTTCACAAATACCCC
AGGGACATTTGTGAAGGCGAGGGCTGCTGAGCTGATGCTGAGCGTGCTGG
GGTTGCCTGTCATGATCGACGACATTCCTACGGACACACCTGAGGACGGG
TGCCCGCTGCTGACAGTCGTCAGGTTTCTGGGCCAGCGCGGCATCTCACA
CATCATGGTCGAAGGCGGGCCCTGCATCGCGCGCCAGTTCCTCAGCGATC
AACTGGTGGACAGGGCCATCATCGTCAAAGCGCCGGTAAAGTTCCAGCAG
CCCGTTCCCAGCGGAATAGACCATTCCGTTCTGCGCAGCGCAGGACTGGA
GCTGCTGGGTACCACGCAGTGGGGGCCGGATGAGGTGGAGTGCTGGTCGA
AACCGGGGTTGGAATGGCCCAATGGAGGGGTGGGAAACTGGCCATAA
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