mRNA_8721 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350368
Unique NamemRNA_8721
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350368 vs. uniprot
Match: A0A836CAV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV8_9STRA)

HSP 1 Score: 260 bits (665), Expect = 9.340e-88
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 
Query:    1 MVAFRLLFAAVWLMLTCSRVSCTSSRHNQRKTQDNDARTGSTAALTRAPPPTYDSLRRLFAGYSIHTWENGGYGYHRPIGHIGYPLERWAPIVGSTGDREQSMKAVLRGSPKGDRGGIGYRGSVK 375
            MVAFRLLFAAVWLMLTCSRVSCTSSRHNQRKTQDNDARTGSTAALTRAPPPTYDSLRRLFAGYSIHTWENGGYGYHRPIGHIGYPLERWAPIVGSTGDREQSMKAVLRGSPKGDRGGIGYRGSVK
Sbjct:    1 MVAFRLLFAAVWLMLTCSRVSCTSSRHNQRKTQDNDARTGSTAALTRAPPPTYDSLRRLFAGYSIHTWENGGYGYHRPIGHIGYPLERWAPIVGSTGDREQSMKAVLRGSPKGDRGGIGYRGSVK 125
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350368 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CAV8_9STRA9.340e-88100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_61contigContig_61:507402..509649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350368|estExt_Genemark1.C_Ctg_610057
Hectar predicted targeting categorysignal peptide
TranscriptId350690
TrackFilteredModels1
ProteinId350368
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350368gene_8721Tribonema minus UTEX_B_3156 geneContig_61 507402..509649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350368Trimin1|350368|estExt_Genemark1.C_Ctg_610057Tribonema minus UTEX_B_3156 polypeptideContig_61 507476..509649 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8721_4exon_8721_4Tribonema minus UTEX_B_3156 exonContig_61 507402..507541 -
exon_8721_3exon_8721_3Tribonema minus UTEX_B_3156 exonContig_61 507883..507904 -
exon_8721_2exon_8721_2Tribonema minus UTEX_B_3156 exonContig_61 508740..508952 -
exon_8721_1exon_8721_1Tribonema minus UTEX_B_3156 exonContig_61 509573..509649 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8721UTR3_8721Tribonema minus UTEX_B_3156 three_prime_UTRContig_61 507402..507475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8721CDS_8721Tribonema minus UTEX_B_3156 CDSContig_61 509573..509649 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8721 ID=mRNA_8721|Name=jgi.p|Trimin1|350368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=452bp|location=Sequence derived from alignment at Contig_61:507402..509649- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCTTTCAGGCTGCTGTTCGCGGCGGTGTGGTTGATGCTGACTTG
CTCGCGGGTCAGCTGCACGAGCAGCAGGCACAATCAGCGCAAGACCCAAG
ACAACGACGCACGCACTGGCAGCACTGCCGCACTCACACGCGCGCCGCCG
CCTACCTACGATTCACTCAGGCGCCTGTTTGCCGGCTACAGCATACATAC
CTGGGAGAACGGCGGTTACGGCTATCACAGGCCCATCGGCCACATTGGCT
ACCCCCTCGAGCGGTGGGCGCCTATAGTCGGTAGCACGGGGGACCGAGAG
CAGTCCATGAAGGCTGTGCTGAGGGGCAGCCCGAAGGGGGATCGAGGGGG
AATCGGGTACAGGGGAAGCGTAAAGTGATGCCAAGGCTGAACACACGACG
CCACCAGAACCCTACAAGATACCTACCCCCTTGGTAAAGCGCCCCGATAA
GC
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protein sequence of jgi.p|Trimin1|350368

>Trimin1|350368|estExt_Genemark1.C_Ctg_610057 ID=Trimin1|350368|estExt_Genemark1.C_Ctg_610057|Name=jgi.p|Trimin1|350368|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
MVAFRLLFAAVWLMLTCSRVSCTSSRHNQRKTQDNDARTGSTAALTRAPP
PTYDSLRRLFAGYSIHTWENGGYGYHRPIGHIGYPLERWAPIVGSTGDRE
QSMKAVLRGSPKGDRGGIGYRGSVK*
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mRNA from alignment at Contig_61:507402..509649-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8721 ID=mRNA_8721|Name=jgi.p|Trimin1|350368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2248bp|location=Sequence derived from alignment at Contig_61:507402..509649- (Tribonema minus UTEX_B_3156 )
ATGGTTGCTTTCAGGCTGCTGTTCGCGGCGGTGTGGTTGATGCTGACTTG
CTCGCGGGTCAGCTGCACGAGCAGCAGGTGAGAGTGAGTTGCACACGATG
GAGGAATGCCTCTGATCTAGTGCGCACTATCACAAGCGCGGATAATGTCT
TAAGAGTATGGGATCTGCCACGGTGTTTGCAGTACTGAGGCAAACATCAT
GCTAACTCAGCTCACTATACAGCAGGGACATGTTGAACTACAACGACACC
TACTGCTTTGGAAAATGTGAATGGAAGCCGCGCACACATTTGATTGTATA
AGCCATCAACGATGCTGTGGTGCGGAGCTAGCGCAAATGGCCCTGTCACG
ATAATCCCTAGTGCGCTCTGCTCTCAGGCGCTCAGGCCAGTTGGGCAGGC
GTGCATCTAAGTTTGCTCCTCGTATAGGCTTAGTCTGATGCGCATGCCTG
CTTTCGCTGCCTGCGTTGCCCCATCAGGGGTAACGGCAAGAAAATAGTTG
ACACTCTCCACGCGCGTTAGCTTCTCTAATGGTTTGTCTCAGCAGCTACG
ACCTAGGCTCTTCAAGCCTAGGACATCAAGCAGCGTCATTGAAACTTCTT
ACAGCGGAAGTTTTCGCTCTGCTGCTGGAATCAGACAAAGCGCCTCTGCT
TATCGTCACAGCAACGGCACTAACACTGCGCATTCCTGCTCGCGCAGGCA
CAATCAGCGCAAGACCCAAGACAACGACGCACGCACTGGCAGCACTGCCG
CACTCACACGCGCGCCGCCGCCTACCTACGATTCACTCAGGCGCCTGTTT
GCCGGCTACAGCATACATACCTGGGAGAACGGCGGTTACGGCTATCACAG
GCCCATCGGCCACATTGGCTACCCCCTCGAGCGGTGGGCGCCTATAGTCG
GTAGCACGGGGTACGGTGTGCCCGGGGCTTGGGCATGGGTGCCAGTGCGG
CCTGTCCCTTAATAAGGCTCTAAACTTAGTAAACTTCCTGGTGTGACTCT
CCACGCTGCAATGTGACGCAGCAGCATGAATCAAGCTGAGCCTGGGGCTT
AGTCATCGTGCAGAGTCGTTCAGCAATTGGATACGACGGATGAGCGTGCA
CAGTCGCAGGTGTGAGCGCTGCCTTTGTGGGGTATATATCTTGACACACA
GATGACAGTGTAGCCTCACTGTATGCTTTTCAGCCGAATTCACGCGCCAA
AGAGGTGGTCTCTCCCGAGGACTTGTCAACACAGGCCAATAAGAACAATG
CCACTGGACTAGTTGGGTACTTGATGCTGCGCGCAATGCACTCAAGGATC
CATAGATCCATATAACATGTTGCTCTGTCAACCTTGGTGTGCTTTGTCCG
TCGTTGCATACCCAGCCTCAGCGCAACAATTGCATGCCCCAGCCTAGCGC
ACGACAAAGCTGTCAGTAATACTTCAACTTGTCTTGTCGAGTGACGAAGT
TAAGCAAAGCGACAGCGATTCAGAATGGGTCCCTGTTTAGTCAGCCGCCA
CAGCAAGTGTATCTGCATAGCAAGTGTCTCTGCACAGCAAGTGCCTCTGC
ACTGCGTGGCAACGGTTTTGATGGGCAATTGCCTGGCTTGGACAAAGGCT
TCTTGCCACTATGCCCTCGCTGGGCCGTTGTGCTTGCAGTGTGCAACATG
TGGTGATACAGTGATATGATATACTGTAGCACCACCGTATACGCTGTGTA
TGAAGGCATTTTCAGGAAGGACTTCGCCGCCCCTGATCTCTGCAGGGACC
GAGAGCAGTCCATGAAGGTGGTGCAATGTACAAGACAGGCAACACCAGCG
CAGCCCCAGGCGCGAACGGAAAATACATTGTCATTATGGATCTGTGTGCG
CGCGCATCTCTGTGTGTGTGCTGAGCACTGTGCTCGCTTTACCCCTCGGC
GCGGCAGGAGGGCGGCCGTGTTGCACACCAAGTTGTGTCACCAACGCCCG
CCGTCTCTTGCAATGCCCACACCGTCATGTGTCTCCCAACTGTATCGTAC
GTGTGTAGTAGTAGGAAATCCGCGCGCTGCTGCCAACTGTAAAAACATAC
AACTTCAACTTGATTCTCTCTCCGCGGGGGGGCGGGGGCGGCGTCGCGCG
CTTCGCAGGCTGTGCTGAGGGGCAGCCCGAAGGGGGATCGAGGGGGAATC
GGGTACAGGGGAAGCGTAAAGTGATGCCAAGGCTGAACACACGACGCCAC
CAGAACCCTACAAGATACCTACCCCCTTGGTAAAGCGCCCCGATAAGC
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Coding sequence (CDS) from alignment at Contig_61:507402..509649-

>mRNA_8721 ID=mRNA_8721|Name=jgi.p|Trimin1|350368|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_61:507402..509649- (Tribonema minus UTEX_B_3156 )
ATGGTTGCTTTCAGGCTGCTGTTCGCGGCGGTGTGGTTGATGCTGACTTG
CTCGCGGGTCAGCTGCACGAGCAGCAGGCACAATCAGCGCAAGACCCAAG
ACAACGACGCACGCACTGGCAGCACTGCCGCACTCACACGCGCGCCGCCG
CCTACCTACGATTCACTCAGGCGCCTGTTTGCCGGCTACAGCATACATAC
CTGGGAGAACGGCGGTTACGGCTATCACAGGCCCATCGGCCACATTGGCT
ACCCCCTCGAGCGGTGGGCGCCTATAGTCGGTAGCACGGGGGACCGAGAG
CAGTCCATGAAGGCTGTGCTGAGGGGCAGCCCGAAGGGGGATCGAGGGGG
AATCGGGTACAGGGGAAGCGTAAAGTGA
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