mRNA_8697 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168980
Unique NamemRNA_8697
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: A0A835YNB4_9STRA (AAR2 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB4_9STRA)

HSP 1 Score: 273 bits (698), Expect = 9.220e-93
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 
Query:    1 TVTPRNSLVHLFSPPQLSPLILNFALKVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQVRPKRLVLLHLRMA 417
            TVTPRNSLVHLFSPPQLSPLILNFALKVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQVRPKRLVLLHLRMA
Sbjct:    1 TVTPRNSLVHLFSPPQLSPLILNFALKVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQVRPKRLVLLHLRMA 139
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: A0A6H5JER9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.490e-27
Identity = 55/114 (48.25%), Postives = 81/114 (71.05%), Query Frame = 1 
Query:   40 PPQLSPLILNFALKVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQVR 381
            P  ++ L ++ +  ++  +   F GSW +LLGE+QLSF+LF+ +SSL  +R WQAL+A LCRC  A++++   F A+IR+LHA LKLVPEDFF  ELS++NFL   L+A+ Q +
Sbjct:  234 PEDVTKLNMDGSEALRMWIAADFGGSWVELLGELQLSFVLFVSLSSLGGFRHWQALSALLCRCGDALKTDPALFTAFIRMLHAHLKLVPEDFFDVELSKDNFLVPCLSALLQAQ 347
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: D8LCU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU7_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.440e-26
Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:  106 FHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQ 375
            F GSW +LLGE+QLSF+LF+ +SSL  +R WQAL+A LCRC  A++++   F A+IR+LHA LKLVPEDFF  ELS++NFL   L+A+ Q
Sbjct:  261 FGGSWVELLGELQLSFVLFVSLSSLGGFRHWQALSALLCRCGDALKTDPALFTAFIRMLHAHLKLVPEDFFDVELSKDNFLVPCLSALLQ 350
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: M4BIW4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIW4_HYAAE)

HSP 1 Score: 105 bits (261), Expect = 6.510e-24
Identity = 47/100 (47.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   79 KVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQV 378
            +++EL+  ++ G W  LLGE+QLSF+LFL +SSLAA+ QW+ L A L  CE A+ ++ P FVA++R+   QLK +PEDFF  E +R NFL   L ++ ++
Sbjct:  230 RLEELIEEQYGGDWKSLLGELQLSFLLFLQLSSLAAFEQWKELVALLSSCERALSAHLPLFVAFVRLFQTQLKQIPEDFFQDETTRRNFLSPCLVSLLEL 329
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: F0W3U1_9STRA (Uncharacterized protein AlNc14C14G1606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3U1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.070e-23
Identity = 47/99 (47.47%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   82 VQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQV 378
            ++E+V + F G+  +LLGE+QLSF++FL +SS AA+ QW+ +   LC CE+A++S+   F+A+ +VL+AQL+ +PEDFF +EL+ ENFLQ  L + F++
Sbjct:  238 LKEIVEQSFDGNGLELLGELQLSFVIFLQLSSFAAFNQWRDILTLLCSCESALKSHSSLFLAFCKVLYAQLEKIPEDFFTSELTDENFLQVILASFFEL 336
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: A0A2P4YDQ9_9STRA (A1 cistron-splicing factor n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDQ9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.690e-22
Identity = 44/100 (44.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   79 KVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQV 378
            +++EL+   F G W +L+GE+QLSF++FL +SSLAA  QW+   A LC CE A+ S+ P F+A+I++   QL+ +P+DFF  E + ENFL   L+++ ++
Sbjct:  222 RLEELIETEFGGKWKELIGELQLSFLVFLQLSSLAALEQWKQFIALLCSCERALASHVPLFLAFIKLFRTQLEQIPQDFFQDETTSENFLSPCLSSLLEL 321
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: A0A6A4G461_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A4G461_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.750e-22
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:   79 KVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQV 378
            +++EL+   F G W +L+GE+QLSF++FL +SSLAA  QW+   A LC CE A+ ++ P F+A+I++   QL  +PEDFF  E + ENFL   L ++ ++
Sbjct:  233 RLEELIETEFGGDWKELIGELQLSFLIFLQLSSLAALEQWKQFIALLCSCERALSTHVPLFLAFIKLFRTQLNQIPEDFFQDETTSENFLGPCLLSLLEL 332
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: A0A3M6VTV8_9STRA (MI domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTV8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.820e-22
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:   79 KVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQV 378
            +++EL+  +F G W  L+GE+QLSF++FL +SSLAA  QW+   A LC CE  + S  P F+A+I++L  QLK +PEDFF  E + ENFL   L ++ ++
Sbjct:  228 RLEELIETQFGGDWKRLIGELQLSFLVFLQLSSLAALEQWKQFIALLCSCERTLASRVPLFLAFIKLLITQLKQIPEDFFQDETTSENFLSPCLLSLLEL 327
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: W2QDE7_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QDE7_PHYPN)

HSP 1 Score: 98.6 bits (244), Expect = 1.510e-21
Identity = 44/100 (44.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   79 KVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQV 378
            +V+EL+   F G W +L+GE+QLSF++FL +SSLAA  QW+   A +C CE A+ S+   F+A+I++   QL+ +PEDFF  E + ENFL+  L ++ ++
Sbjct:  226 RVEELIETEFGGDWKELIGELQLSFLVFLQLSSLAALEQWKQFIALMCSCERALSSHVWLFLAFIKLFRTQLEQIPEDFFQDETTSENFLRPCLLSLLEL 325
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BLAST of jgi.p|Trimin1|168980 vs. uniprot
Match: A0A0W8DY34_PHYNI (AAR2 protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DY34_PHYNI)

HSP 1 Score: 98.6 bits (244), Expect = 1.650e-21
Identity = 44/100 (44.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   79 KVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQV 378
            +V+EL+   F G W +L+GE+QLSF++FL +SSLAA  QW+   A +C CE A+ S+   F+A+I++   QL+ +PEDFF  E + ENFL+  L ++ ++
Sbjct:  232 RVEELIETEFGGDWKELIGELQLSFLVFLQLSSLAALEQWKQFIALMCSCERALSSHVWLFLAFIKLFRTQLEQIPEDFFQDETTSENFLRPCLLSLLEL 331
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168980 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNB4_9STRA9.220e-93100.00AAR2 protein-domain-containing protein n=1 Tax=Tri... [more]
A0A6H5JER9_9PHAE1.490e-2748.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCU7_ECTSI2.440e-2658.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M4BIW4_HYAAE6.510e-2447.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
F0W3U1_9STRA1.070e-2347.47Uncharacterized protein AlNc14C14G1606 n=1 Tax=Alb... [more]
A0A2P4YDQ9_9STRA1.690e-2244.00A1 cistron-splicing factor n=1 Tax=Phytophthora pa... [more]
A0A6A4G461_9STRA4.750e-2244.00Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A3M6VTV8_9STRA6.820e-2246.00MI domain-containing protein n=2 Tax=Peronospora e... [more]
W2QDE7_PHYPN1.510e-2144.00Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
A0A0W8DY34_PHYNI1.650e-2144.00AAR2 protein n=1 Tax=Phytophthora nicotianae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_61contigContig_61:378643..379062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168980|e_gw1.61.20.1
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko03041
KEGG ModuleM00151,M00152,M00428
KEGG Pathwayko00190,ko01100,ko02020,ko03013,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05416,map00190,map01100,map02020,map03013,map04260,map04714,map04932,map05010,map05012,map05016,map05416
KEGG koko:K00411,ko:K03260,ko:K13205
EC1.10.2.2
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1990904
Descriptionspliceosomal tri-snRNP complex assembly
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3937@1|root,KOG3937@2759|Eukaryota
Evalue4e-27
Seed ortholog2880.D8LCU7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006950.1
TranscriptId169302
TrackFilteredModels1
ProteinId168980
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168980gene_8697Tribonema minus UTEX_B_3156 geneContig_61 378643..379062 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8697_1exon_8697_1Tribonema minus UTEX_B_3156 exonContig_61 378643..379062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8697CDS_8697Tribonema minus UTEX_B_3156 CDSContig_61 378643..379062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168980Trimin1|168980|e_gw1.61.20.1Tribonema minus UTEX_B_3156 polypeptideContig_61 378643..379062 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8697 ID=mRNA_8697|Name=jgi.p|Trimin1|168980|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_61:378643..379062- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACGGTCACCCCCCGCAACAGCCTCGTGCACCTGTTTTCCCCTCCTCAACT
CTCACCTTTGATCTTGAACTTTGCCCTCAAGGTTCAAGAGCTGGTGACGC
GCCGCTTCCACGGCTCCTGGCACGACCTCCTCGGCGAAGTTCAACTCTCC
TTCATCCTCTTCCTCTACATCAGCAGCCTGGCGGCGTACCGCCAGTGGCA
GGCGCTGACGGCAGCGCTCTGCAGATGCGAAACCGCCGTGGAGAGCAACG
GACCGTTCTTTGTCGCGTACATCCGGGTGCTGCACGCGCAGCTCAAGCTC
GTGCCCGAGGACTTCTTTGCGACGGAGCTCTCGCGCGAGAACTTCCTGCA
GTCTTCGCTGACGGCCATGTTCCAGGTGCGGCCCAAACGCCTGGTCTTGT
TACACTTGCGTATGGCTTGA
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protein sequence of jgi.p|Trimin1|168980

>Trimin1|168980|e_gw1.61.20.1 ID=Trimin1|168980|e_gw1.61.20.1|Name=jgi.p|Trimin1|168980|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
TVTPRNSLVHLFSPPQLSPLILNFALKVQELVTRRFHGSWHDLLGEVQLS
FILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKL
VPEDFFATELSRENFLQSSLTAMFQVRPKRLVLLHLRMA*
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mRNA from alignment at Contig_61:378643..379062-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8697 ID=mRNA_8697|Name=jgi.p|Trimin1|168980|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_61:378643..379062- (Tribonema minus UTEX_B_3156 )
ACGGTCACCCCCCGCAACAGCCTCGTGCACCTGTTTTCCCCTCCTCAACT
CTCACCTTTGATCTTGAACTTTGCCCTCAAGGTTCAAGAGCTGGTGACGC
GCCGCTTCCACGGCTCCTGGCACGACCTCCTCGGCGAAGTTCAACTCTCC
TTCATCCTCTTCCTCTACATCAGCAGCCTGGCGGCGTACCGCCAGTGGCA
GGCGCTGACGGCAGCGCTCTGCAGATGCGAAACCGCCGTGGAGAGCAACG
GACCGTTCTTTGTCGCGTACATCCGGGTGCTGCACGCGCAGCTCAAGCTC
GTGCCCGAGGACTTCTTTGCGACGGAGCTCTCGCGCGAGAACTTCCTGCA
GTCTTCGCTGACGGCCATGTTCCAGGTGCGGCCCAAACGCCTGGTCTTGT
TACACTTGCGTATGGCTTGA
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Coding sequence (CDS) from alignment at Contig_61:378643..379062-

>mRNA_8697 ID=mRNA_8697|Name=jgi.p|Trimin1|168980|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_61:378643..379062- (Tribonema minus UTEX_B_3156 )
ACGGTCACCCCCCGCAACAGCCTCGTGCACCTGTTTTCCCCTCCTCAACT
CTCACCTTTGATCTTGAACTTTGCCCTCAAGGTTCAAGAGCTGGTGACGC
GCCGCTTCCACGGCTCCTGGCACGACCTCCTCGGCGAAGTTCAACTCTCC
TTCATCCTCTTCCTCTACATCAGCAGCCTGGCGGCGTACCGCCAGTGGCA
GGCGCTGACGGCAGCGCTCTGCAGATGCGAAACCGCCGTGGAGAGCAACG
GACCGTTCTTTGTCGCGTACATCCGGGTGCTGCACGCGCAGCTCAAGCTC
GTGCCCGAGGACTTCTTTGCGACGGAGCTCTCGCGCGAGAACTTCCTGCA
GTCTTCGCTGACGGCCATGTTCCAGGTGCGGCCCAAACGCCTGGTCTTGT
TACACTTGCGTATGGCTTGA
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