mRNA_8668 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: A0A835YMV1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV1_9STRA) HSP 1 Score: 1247 bits (3226), Expect = 0.000e+0 Identity = 798/798 (100.00%), Postives = 798/798 (100.00%), Query Frame = 1
Query: 1 MTTPVNVEAAVKAYLRSQGYEDAARAMEEQADKIKSNQARHTGTVSAQPGTEAARRFALSYGFTSPEKLSESVLFSGVLEGKPSRLVELYGMLEAFIAGSLDAYKTELRSVAFPVFAHFYLDLVLRGADKEAKQLMSTWAAEHSLHYEDEANVQPEPEPELQLFTKLYTDKPREVRRTILSGTPKFNAEALVSAGLDVAKVRALSAVTTPEHAAASDLARRLRAHPFRVSLSRTAGALLDAWLARAPSLLPLAAAINTRAALRIEDRPPRQHFEPALCGPAGDTVLWPALPGAHVAAAKRRRGDAEITGQGQRDLALLLDSEWYAEYLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYRSGPQQGAEGSGSEPPPVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNAAYLATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVGXDDGIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLCKFVHMCVHDAQVSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIWDFKVTAHQPASDSAAAAAAAPIVGAPHDKAQSAASACERHTFYTKSTPVYGLRYTDRNLLLAAGPYVDDNETVNSKFPERSPGQRL 2394
MTTPVNVEAAVKAYLRSQGYEDAARAMEEQADKIKSNQARHTGTVSAQPGTEAARRFALSYGFTSPEKLSESVLFSGVLEGKPSRLVELYGMLEAFIAGSLDAYKTELRSVAFPVFAHFYLDLVLRGADKEAKQLMSTWAAEHSLHYEDEANVQPEPEPELQLFTKLYTDKPREVRRTILSGTPKFNAEALVSAGLDVAKVRALSAVTTPEHAAASDLARRLRAHPFRVSLSRTAGALLDAWLARAPSLLPLAAAINTRAALRIEDRPPRQHFEPALCGPAGDTVLWPALPGAHVAAAKRRRGDAEITGQGQRDLALLLDSEWYAEYLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYRSGPQQGAEGSGSEPPPVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNAAYLATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVGXDDGIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLCKFVHMCVHDAQVSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIWDFKVTAHQPASDSAAAAAAAPIVGAPHDKAQSAASACERHTFYTKSTPVYGLRYTDRNLLLAAGPYVDDNETVNSKFPERSPGQRL
Sbjct: 1 MTTPVNVEAAVKAYLRSQGYEDAARAMEEQADKIKSNQARHTGTVSAQPGTEAARRFALSYGFTSPEKLSESVLFSGVLEGKPSRLVELYGMLEAFIAGSLDAYKTELRSVAFPVFAHFYLDLVLRGADKEAKQLMSTWAAEHSLHYEDEANVQPEPEPELQLFTKLYTDKPREVRRTILSGTPKFNAEALVSAGLDVAKVRALSAVTTPEHAAASDLARRLRAHPFRVSLSRTAGALLDAWLARAPSLLPLAAAINTRAALRIEDRPPRQHFEPALCGPAGDTVLWPALPGAHVAAAKRRRGDAEITGQGQRDLALLLDSEWYAEYLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYRSGPQQGAEGSGSEPPPVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNAAYLATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVGXDDGIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLCKFVHMCVHDAQVSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIWDFKVTAHQPASDSAAAAAAAPIVGAPHDKAQSAASACERHTFYTKSTPVYGLRYTDRNLLLAAGPYVDDNETVNSKFPERSPGQRL 798
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: A0A2P6TUX6_CHLSO (Transcription initiation factor TFIID subunit 5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TUX6_CHLSO) HSP 1 Score: 172 bits (435), Expect = 3.660e-41 Identity = 171/573 (29.84%), Postives = 230/573 (40.14%), Query Frame = 1
Query: 16 NVEAAVKAYLRSQGYEDAARAMEEQADKIKSNQARHTGTVSAQPGTEAARRFALSYGFTSPEKLSESVLFSGVLEGKPSRLVELYGMLEAFIAGSLDAYKTELRSVAFPVFAHFYLDLVLRGADKEAKQLMSTWAAEHSLHYEDEANVQPEPEPELQLFTKLYTDKPREVRRTILSGTPKFNAEALVSAGLDVAKVRALSAVTTPEHAAASDLARRLRAHPFRVSLSRTAGALLDAWLARAPSLLPLAAAINTRAALRIEDRPPRQHFEPA---------------------------LCGPAGDTVLWPALPGAHVAAAKRRRGDAEITGQGQRDLALLLDSEWYAEYLRNVVLQPLDPRAAVASAAEA-LRKAAA---PSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYRSGPQQGAEGSGSEPPPVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPL--GYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNAAY 1635
+V+ V YLR + +++A + +E ++ +A TG + AQ G E + E +LF+ EG P+ LV+ + A++ SLD YK EL V FP FAH YL+LV GA EA+ LM EH + D I +G +AL L+ +++ E AAS A LR F + L R + LL L + P L + +N + D P E A L G D A A ++ + +A Q + P P A A +AE L K A P A+A P+ T NT SL CV DA+ VA GF D S R+Y + A G+G GH+ P+Y L ++PD+ L + GDG VRLW S E + L Y+GH +W V P +YFAS GADRTAR+WSTDR QPLRLFVGH DV VR+HPN Y
Sbjct: 9 DVDRLVLQYLRKRNFKEAEKVLE-----LEIKEAAPTGEMIAQQWL----------GGRGGEGVEEGLLFATAGEGDPAGLVQAFDRFAAWVDNSLDLYKPELARVLFPAFAHTYLNLVAMGAQAEAQTLMG----EHRQRFMD-----------------------------IAAGGSTSRIQALTD----------LAGISSEEAIAASRTAAALRGQRFAIRLCRASYELLAQHL-QLPKQLVMLGVVNEHIKFEVHDGAPATLAELAEVEEDLTAGAMQADVVTINQRSLELQLLQGSVEDRYAQQKAEEAEEVANQKAQAEALTKKQRXXXXXXXXXXXXXXXXXXXXRMAPKFPLPAPAESAEDYLMKELAQRVPLSAEAL------PSCAFFTFFNTAQSLNCVAFTSDASIVAGGFADSSVRLYDLQARAAAGGAGDWV--TYFSGHSGPVYGLDFSPDNELLFSASGDGTVRLW------------SREVQAN-----LSVYRGHMLPVWDVSACPYFAPFYFASCGADRTARMWSTDRTQPLRLFVGHTSDVDVVRWHPNCHY 497
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: E1ZEQ5_CHLVA (LisH domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZEQ5_CHLVA) HSP 1 Score: 154 bits (388), Expect = 4.970e-35 Identity = 174/599 (29.05%), Postives = 251/599 (41.90%), Query Frame = 1
Query: 16 NVEAAVKAYLRSQGYEDAARAME-EQADKIKSNQARHTGTVSAQPGTEAARRFALSYGFTSPEKLSESVLFSGVLEGKPSRLVELYGMLEAFIAGSLDAYKTELRSVAFPVFAHFYLDLVLRGADKEAKQLMSTWAAEHSLHYEDEA----NVQPEPEPEL--------------------------------QLFTKLYTDKPREVRRTILSGTPKFNAEALV----SAGLDVAKVRALSAVTTPEH--AAASDLA---RRLRAHPFRVSLSRTAGALLDAWLARAPSLLPLAAAINTRAAL---RIEDRPPRQHFEPALCGPAGDTVLWPALPGAHVAAAKRRRGDAEITGQGQRDLAL---LLDSEWYAEYLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYRSGPQQGAEGSGSEPPP--VRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVD----FSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNAAYL 1638
+++ V YLR + +++A + +E E + I P E + L +G E + E +LF+ EG P+ LV+ + L A++ SLD Y EL V FP FAH YL+L+ GA EA+QLM H + D A N++ + +L L T+ + V I++ KF A L +AG +A L + E A +DLA L A + + T L L +A + L AAA + L R + PA+ G D W +++ +AE + +R +AL + P P ++ E + + AD+L P+ T NT SL CV + DAA VA GF D S R+Y + +G+ P GH+ P++ L ++PD++ L + GDG VRLW + + L YKGH+ +W V FSP +YFAS GADRTARLWSTDR QPLRLFVGH DV VR+HPN Y+
Sbjct: 9 DIDRLVLEYLRKRNFKEAEKVLELEMKESI--------------PAGELLVQSWLGWG---GEGVEERLLFATAGEGDPAELVQAFDRLAAWVDNSLDIYNPELSRVLFPAFAHTYLNLINIGAMPEAQQLMGA----HRQRFLDAAVGGSNLRMQELQDLASISSAEAAAASRTASALRSRRLSIRLCRASYDLLTQFLQGPKQLVMLGIVNEHIKFEARMLAGEPAAAGSTLAAFPRLLLLLVVEGRPATLADLAGVEEDLTAGAMQADVVATNQFPLQLRLLQARACLFRAAAASAGMGLQQGRQAEEEADAASSPAIWGSVEDK--WAQQQAEKAEDEAQKQAEAEALTKKKR-IALQRXXXXXXXXXXXXXXXXVAPKFPLPPISDEQEGMLMQELQLRQQVS-ADSL-PSCCFFTFFNTHQSLNCVAFSSDAAAVAGGFADSSVRLYDLQARASGAAAGAAPADWVTYFAGHSGPVFGLDFSPDNQLLFSASGDGSVRLWSMEVRAN-----------------LAVYKGHQLPVWDVATCPYFSP--FYFASCGADRTARLWSTDRVQPLRLFVGHTSDVDVVRWHPNCHYI 562
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: F0Y6S0_AURAN (TFIID_NTD2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6S0_AURAN) HSP 1 Score: 142 bits (357), Expect = 9.600e-32 Identity = 145/470 (30.85%), Postives = 201/470 (42.77%), Query Frame = 1
Query: 295 GSLDAYKTELRSVAFPVFAHFYLDLVLR--------GADKEAKQLMSTWAAEHSLHYEDEANVQPEPEPELQLFTKLYTDKPREVRRTILSGTPKFNAEALVSAGLDVAKVRALSAVTTPEHAAASDLARRLRAHPFRVSLSRTAGALLDAWLARAPSLLPLAAAINTRAALRIEDRPPRQHFEPALCGPAGDTVLWPALPGAHVAAAKRRRG---DAEITGQGQ---RDLALLLDSEWYAEYLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGAS-LVCVDTAPDAARVAAGFEDCSARVYRSGPQQG--AEGSGSEPPPVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPL--GYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNAAYLATA 1647
G+L++ + EL + FPVFA +L +V G + ++ + W A H+ +F AE V AL VT+P AA RLR + V LS A ALL +L + L N + L + P + AL +GD V A A A R G +E G R A D ++ LR+ +PL P A + + AP DA L+PTVL + A+ L C + DA R+A GF D S R++R G A S +E LV H +P+Y+L+W+ +SR+LL+GGGDG LWD R G+ +P L +Y H W V + G+ FA+GG DRTARL++TDR PLR+F GH DV+AV FH NA Y+ +A
Sbjct: 31 GALESVRCELSATLFPVFAQCFLVVVATEAEASGEDGGEPASRAFLERWGASHA---------------------------------------DRFAAE-----------VEALRLVTSPVVAAKDAYCARLRGGRWVVPLSGAAQALLGDFLTSTGNAAVLKV-FNEKVTL--DGTAPGRGEAAALVETSGDEVEAAAAARAGAAPPPARLGVLLGSEALDGGAPAGRAPAPDWDDDYGRGLLRDGSRRPLAPP----PPAGLVGRGRAPLDA-------LKPTVLDARVAGADAARLSCCAASRDATRLAGGFADASLRLWRVDELAGDDAGSSDAEAATTALVAHDRPVYALAWSSESRYLLSGGGDGCCVLWDADAPG-----RGGPGASGAP---LCSYAAHVAPCWSVAWCAASGGHVFATGGGDRTARLFATDRADPLRVFAGHWADVSAVCFHANAHYVLSA 428
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI) HSP 1 Score: 131 bits (330), Expect = 5.860e-28 Identity = 129/458 (28.17%), Postives = 180/458 (39.30%), Query Frame = 1
Query: 148 GTEAARRFALSYGFTSPEKLSESVLFSGVLEGKPSRLVELYGMLEAFIAGSLDAYKTELRSVAFPVFAHFYLDLVLRGADKEAKQLMSTWAAEHSLHYEDEANVQPEPEPELQLFTKLYTDKPREVRRTILSGTPKFNAEALVSAGLDVAKVRALSAVTTPEHAAASDLARRLRAHPFRVSLSRTAGALLDAWLARAPSLLPLAAAINTRAALRIEDRPPRQHFEPALCGP--AGDTVLWPAL------------------------PGAHVAAAKRRRG----------------DAEITGQGQRDLALLL------DSEWYAEYLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYRSGPQQGAEGSGSEPPPVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDL 1377
G + R FA G + + +SV+ G+LEG P ++ + Y L F+A S + Y+ EL +V FPVF H YL LV+ EA+ LM W EH ++DE + L VT EHA ASD + + H FRV + LL+A+L LL + +NTR +E+R P + CGP A L P P A A R G + + Q +RD++L L D YLR + L+PLD A + A P LA+ L P V+M T N +L C+ D G + A + ++ VRLVGH++P+Y +SW+PD RFLL+ GGDG VRLWD+
Sbjct: 70 GGDDVRAFARRQGMDAAVRDGDSVMAWGILEGSPEKVEQAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTL--------------------------------------------------LKMVTAREHAEASDYCKLVLTHKFRVKICLATSKLLNAFLVN-KGLLLVMHILNTRVQFVLEERSPLPFAQVVRCGPDDAFPAALRPRSSDXXXXXXXXXXXXXXXXXKATKEPAAPATTAGRGGGRGVQEEDLKWAAAPPMEVALMKQTERDVSLPLKPPPQPDPPENWPYLR-LALRPLDS-AQLKDTLSTPEGGARPF-----LANPLSPHVVMVTFYNAVDTLCCLKPTRD------GMQRNGAAXXXXXXXXXQDSGLADT--VRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDI 461
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: A0A8J2SGI8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGI8_9STRA) HSP 1 Score: 117 bits (294), Expect = 7.980e-24 Identity = 77/187 (41.18%), Postives = 99/187 (52.94%), Query Frame = 1
Query: 1090 DALEPTVLMTTLINTGASLV-CVDTAPDAARVAAGFEDCSARVYRSGPQQGAEGSGSEPPPVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGV------DFSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNA 1629
DAL+PTVL ++ A V CV + D R AGF D + R++R P + + P L H + S+SWA SR+ L+ G DG V LWD ++EG G +P L Y H A W V D G FA+GGADRT RL+STDR +PLR+F GH DVT+V+ HPNA
Sbjct: 252 DALKPTVLGLCIVGGDAQRVSCVQGSDDTTRCIAGFADSTVRIWR--PDAVEDDDKNRRPSKPLAAHVGGVSSVSWAGGSRYALSSGNDGAVVLWDAD-------APNDEGEG-AP---LQRYAAHADACWSVHSPSSSDSLGGGRIFATGGADRTCRLFSTDRTRPLRIFAGHWSDVTSVKIHPNA 425
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: A0A2K3D4K9_CHLRE (TFIID_NTD2 domain-containing protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3D4K9_CHLRE) HSP 1 Score: 118 bits (295), Expect = 1.410e-23 Identity = 75/220 (34.09%), Postives = 102/220 (46.36%), Query Frame = 1
Query: 1093 ALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVY---------------RSGPQQGA-------EGSGSEPPP-------------VRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNAAYLATA 1647
A P+ T +N +L C D +++ AGF D S RVY R G G +G+ + PP + L GHT ++++ ++ D R +L+G DG VR+W + S CL Y GH +W V PLG++FAS GADR ARLW ++R QPLRL VGH DV VR+HPN +ATA
Sbjct: 382 ATPPSCAFFTFVNAKQTLNCSTFNCDGSKIVAGFNDSSVRVYDMPTISQHHALLRRSRRGQVPGGXXXXTNPDGTPAPAPPSADDLEESEPPGTLYLHGHTAAVHAVDFSVDQRLVLSGSSDGTVRVWGAEFGS-----------------CLAVYPGHVFPVWDVAACPLGHWFASAGADRVARLWVSERTQPLRLLVGHNADVDVVRWHPNCCLVATA 584
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: A0A1Y1YRP4_9FUNG (WD40 repeat-like protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YRP4_9FUNG) HSP 1 Score: 114 bits (286), Expect = 1.170e-22 Identity = 130/521 (24.95%), Postives = 209/521 (40.12%), Query Frame = 1
Query: 187 FTSPEKLS--ESVLFSGVLE-GKPSRLVELYGMLEAFIAGSLDAYKTELRSVAFPVFAHFYLDLVLRGADKEAKQLMSTWAAEHS-LHYED----EANVQP---EPEPELQLFTK-----LYTDKPREVRRTILSGTPKFNAEALVSAGLDVAKVRALSAVTTPEHAAASDLARRLRAHPFRVSLSRTAGALLDAWLARAPSLLPLAAAINTRAALRIEDRPPRQHFEPALCGPAGDTVLWPALPGAHVAAAKRRRGDAEITGQGQRDLALLLDSEWYAEYLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYR-SGPQQGAEGSGSEPPPV------------------RLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNAAYLAT 1644
FTS ++ S + +LF E G P + Y L +I SLD YK EL+ V +P++ H +LDLV +G ++A++ ++ ++H H D EA +P E P +Q++ K T+ E+ + L +V+ L++ + V H + + P ++ AL D AL+ D + GP D++ + V K+ + D G + D+ L ++ D +A + S + LRK L P++ M T NT SL CV DA+ VA GF + +V+ G + S P + +L+GH+ P++ LS++ D+++L++ D VRLW + + L++YKGH +W VDF PL WS D PLR+F GH+ DV V+FHPN+ YL T
Sbjct: 51 FTSQDEASVPDYLLFYNEAEQGNPDAYGDSYLSLRRWIENSLDLYKGELKVVLYPIYIHAFLDLVSKGYREQAQEFFKSYKSDHEEFHTPDIQRLEAVTEPQHVEENPLVQIYRKNKYNLKMTNVTFELFISFLQDNKFMLLLRIVNQYLNIQDIETEEGVGITGHK--THQLKAFNQQPVQLGQLPPDPALKD----------------EVERALKENDEKAKAD------GPETDSIA-----SSLVEEYKKVKVDGAQDGPTREDIPL-------------PPIKGFDIQAEIDSIVD-LRKRLK-------LGPGALPSICMYTFHNTSGSLNCVSMTEDASLVAGGFSESYIKVWSLKGEKLKGFRSNFNPAHINDASDLNRLKERQGHEYKKLIGHSGPVFGLSFSHDNKYLVSSSEDSTVRLWSMDTYTN-----------------LVSYKGHNYPVWDVDFGPL---------------WSCDHISPLRIFAGHLSDVDCVKFHPNSKYLVT 489
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: A0A7S1D7F8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7F8_CYCTE) HSP 1 Score: 106 bits (265), Expect = 3.080e-21 Identity = 61/157 (38.85%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 1270 VRLVGHTK--PIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGE---------------RSEEGSG------------DSPAKCLMAYKGH--KCAIWGVDFSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGD-VTAVRFHPNAAYLAT 1644
+ L+GH P++ + W D R LL+ GGDG +RLWD G +G SEEG G D L Y+GH C IW V F+P GYYFAS G+D T R+++TDRP P+R+ GH V VR+HPN Y T
Sbjct: 9 IVLLGHKNGFPVFDVDWNRDGRTLLSAGGDGTIRLWDAS-VKGPFGTVATVTRRVTAAKPEPSSEEGPGMTVPGLKDESTEDVAGAALAVYRGHAPSCPIWSVSFAPSGYYFASAGSDGTGRIFTTDRPAPVRILSGHTSSSVNCVRWHPNCNYALT 164
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Match: A0A8J4YTJ1_9CHEL (Transcription initiation factor TFIID subunit 5 n=4 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4YTJ1_9CHEL) HSP 1 Score: 110 bits (276), Expect = 3.330e-21 Identity = 133/552 (24.09%), Postives = 215/552 (38.95%), Query Frame = 1
Query: 214 SVLFSGVLEGKPSRLVELYGMLEAFIAGSLDAYKTELRSVAFPVFAHFYLDLVLRGADKEAKQLMSTWAAEHSLHYEDEANVQPEPEPELQLFTKLYTDKPREVRRTILSGTPKFNAEALVSAGLDVAKVRALSAVTTPEHAAASDLARRLRAHPFRVSLSRTAGALLDAWLARAPSLLPLAAAINTRAALRIEDRPPRQHFEP-----ALCGPA----GDTVLWPAL---PGAHVAA----------AKRRRGDAEITGQGQRD-----LALLLDSEWYA------EYLRNVV-LQPLDPRAAVASAAEALRKAAAPSDADAALADALE---------PTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVY----------RSGPQQGAEGSGSEPPPVRLV------------GHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLG-WSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPL--------------GYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAVRFHPNA 1629
+VL + EG P + Y L+ FI +LD YK EL + +PVF H YL+LV + +A + M ++AE +++D+ ++ LS V EH ++L + F + +SR + A L L + L I L I + R + A+CG A T ++ L P H+ K+ + D ++ + + D L L E ++ EY+ V L+ D LR+ A D A+ ++L+ P++ T+IN ++ + DA+ +AAGF + +V+ R + ++ VR+V GH+ P+Y++S++ + LL+ D +RLW L W++ L+ YKGH +W V F+ G YFA+ G DRTAR WSTD QPLRLF+GH+ D+ + FHPN+
Sbjct: 90 NVLSTYKSEGNPDIYDDTYTNLKKFIESALDTYKHELAMIVYPVFVHMYLELVYNEHEAQAFRFMEKFSAEQESYHQDD--------------------------------------------------IKRLSTVKKKEHMKGTELIDNFKTSQFTIRMSRDSCAFLKKHLQEKKQNV-LLNIIQEHLYLDIYEGITRSKQQVDATAGAMCGEAIRQANKTKVYYGLLKEPELHIPIDDEEDGVEPKKKKAKKDPMLSKKSKNDPNAPSLTRLPLPELFSATPENKEYMVVVFNLKSADDFLNKTEQKRDLRRDADKLDKVNAMRESLKRVKLGSNNLPSISFYTVINAHQTVTSISICEDASFLAAGFSNSFIKVWSLTQDKLKKMRVSQELSQIDKEADDVLVRMVSDKGNADCRCLYGHSGPVYAISFSHNKTSLLSCSEDSTIRLWSLQTWTN------------------LVCYKGHNYPVWDVKFNNFFQNELCWYFIYSLQGNYFATCGHDRTARFWSTDHHQPLRLFIGHISDIDCIEFHPNS 572 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350341 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8668 ID=mRNA_8668|Name=jgi.p|Trimin1|350341|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2467bp|location=Sequence derived from alignment at Contig_61:123232..132798+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACAACTCCTGTGAATGTCGAGGCTGCTGTGAAGGCGTACCTACGCTCback to top protein sequence of jgi.p|Trimin1|350341 >Trimin1|350341|estExt_Genemark1.C_Ctg_610014 ID=Trimin1|350341|estExt_Genemark1.C_Ctg_610014|Name=jgi.p|Trimin1|350341|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=799bp MTTPVNVEAAVKAYLRSQGYEDAARAMEEQADKIKSNQARHTGTVSAQPGback to top mRNA from alignment at Contig_61:123232..132798+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8668 ID=mRNA_8668|Name=jgi.p|Trimin1|350341|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9567bp|location=Sequence derived from alignment at Contig_61:123232..132798+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_61:123232..132798+ >mRNA_8668 ID=mRNA_8668|Name=jgi.p|Trimin1|350341|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2397bp|location=Sequence derived from alignment at Contig_61:123232..132798+ (Tribonema minus UTEX_B_3156 )back to top |