mRNA_8641 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|77805
Unique NamemRNA_8641
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A835YYI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI6_9STRA)

HSP 1 Score: 446 bits (1148), Expect = 2.470e-156
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1
Query:   46 MSMLTLAAGFQVPAPSHVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKRRQQ 702
            MSMLTLAAGFQVPAPSHVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKRRQQ
Sbjct:    1 MSMLTLAAGFQVPAPSHVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKRRQQ 219          
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: D7G2X2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X2_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.700e-52
Identity = 97/217 (44.70%), Postives = 134/217 (61.75%), Query Frame = 1
Query:   85 APSHVHSAS---LAAQTKQDSSDT------VSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKA-----GKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKR 693
            APSH + +    LA + +Q   DT      VS++  T G  K  V GLT+ F   +   E+   + A       LS  +L  GI++++  K YLWTG I+++LY EDC FTDPTLSF GLST+K+NVGSL+ +++  V      L SCEL +++ CV+ RWRM G ++LPW P +DV+GRT F+YD + GNR+  Y E WE+ A EALMQ+  PG R
Sbjct:   19 APSHRYRSRALRLAPRQEQGEGDTDSHSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYA-KNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGTR 234          
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A6S9RDB2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9RDB2_CHRCT)

HSP 1 Score: 184 bits (466), Expect = 5.210e-50
Identity = 88/198 (44.44%), Postives = 129/198 (65.15%), Query Frame = 1
Query:  118 AQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAIS-PAKEEEVVVKAGK-----LSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKR 693
            A+ ++      +D+ GT    +G+VS LT   NA+S    +E   ++A       L+P +L  G+++D+V ++YLWTG ID NLY  DC+FTDPTLSF+GLST+++N+ +L+PL++ALV +  VDL S      E  ++A WRM G I LPW P +D+ G T FTYDP +GNR+ +Y E+W++ A  AL QL+ PG R
Sbjct:  298 AEPERTGGTPAADFQGTSPFVQGVVSSLTALVNAVSGKTMDEPAALEADSELRPPLTPSELLEGVRDDYVARKYLWTGDIDPNLYDSDCVFTDPTLSFKGLSTFQRNIANLKPLLDALVRDPVVDLYSISSTVDETQIKATWRMKGEIALPWAPVIDLTGSTVFTYDPLKGNRITEYTESWDISAASALGQLLRPGAR 495          
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A061RRB7_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RRB7_9CHLO)

HSP 1 Score: 173 bits (438), Expect = 2.620e-48
Identity = 84/185 (45.41%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  151 SDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGK-----LSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGK 690
            S +  T  + K IVSGLT A N  S +  E V     +     +SP+QL  G+++DF +  YLW+G ID NLY  DC FTDPTLSF+GL T+++N+ +L+P ++ LV     +L+  +L E    VRARWRM G I+LPW P +++ GRTRF Y+P +G RV +YFE W++   EAL+QL+ P +
Sbjct:   78 SSHNSTNFVVKSIVSGLTKAINWTSGSPPERVDYSTEEDTRAPVSPQQLLWGVEKDFTENGYLWSGAIDTNLYCRDCTFTDPTLSFKGLETFERNLRNLQPWIDRLVRNEVCELIDIQLLEDSNEVRARWRMKGDIQLPWGPQINLTGRTRFCYNPDKGGRVEEYFEEWDISGAEALLQLLRPAR 262          
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A7S1DMA4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMA4_HEMAN)

HSP 1 Score: 167 bits (422), Expect = 6.540e-46
Identity = 85/190 (44.74%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  127 KQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVV---KAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPE-FGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTP 684
            ++D++ T S    + G+ K IVSGLTN  NA+    E+   +   +   +S ++L  GIK D+ ++RYLWTG ID  LY  DC+FTDPTLSF+GL T++ N+ +LRP ++ LV +   V++  C+L   E  V+A WRM G +K+PW P +D+ G T FTY P++GNR+VDY E WE P  + L+QL+ P
Sbjct:   79 EEDTTKTTSYGQSSTGV-KAIVSGLTNLVNAVMQRGEDPSKLDRPQRDDISEQELLEGIKGDY-ERRYLWTGEIDPYLYDYDCVFTDPTLSFKGLKTFQSNLANLRPFIDFLVQDDCSVEMYGCDLVLGEPQVKASWRMVGRLKVPWTPTIDLNGTTVFTYSPSKGNRIVDYQEVWETPPSKVLLQLLVP 266          
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A813FI16_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FI16_POLGL)

HSP 1 Score: 145 bits (367), Expect = 6.000e-38
Identity = 87/197 (44.16%), Postives = 116/197 (58.88%), Query Frame = 1
Query:  139 SDTVSDYAGTGGIA-KGIVSGLTNAFNAIS---PAKEEEVVVKAGK---LSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGV--DLLSCELNEKEKCVRARWRMWGYIK-LPWQPAVDVIGRTRFTYD-----PAEGNRVVDYFETWELPAGEALMQLVTP 684
            S+  S +  + G+A KGIVS LTN  N+ S   P+ EE     A      SP++L   I+ED+  K YLWTG ID + +   C FTDPTLSF G   + KN+ +LRP+V+AL    G   DLL  +L   +  ++ RW M G +  LPW+P +DVIGRT+F Y      P E   V  Y E WE+PAG+AL+QL+TP
Sbjct:   50 SERPSRFEDSEGVASKGIVSSLTNLVNSFSSSGPSLEESSTSPAAASSPASPQELLERIREDYTVKNYLWTGDIDLSAFDRQCQFTDPTLSFTGTDQFVKNLQNLRPIVDALTRPGGCRSDLLDIQLFPDQGYIQTRWNMIGELSALPWKPQIDVIGRTKFWYRADEQAPDERFNVFFYDEEWEIPAGKALLQLITP 246          
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: C1EIW1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EIW1_MICCC)

HSP 1 Score: 144 bits (363), Expect = 1.090e-37
Identity = 84/209 (40.19%), Postives = 117/209 (55.98%), Query Frame = 1
Query:  148 VSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKL------------------SPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVD-LLSCELNEKEK------CVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNR---VVDYFETWELPAGEALMQLVTPGK 690
            +S+Y GT G  KG+VSGLT   NA      +  V  +G                    +P  L   I  +F + +YLWTG I+  +Y   C FTDPTLSF GL T+++N+ +L+P+++ LV +  V+ L SCEL    K       VRARWRM G +++PW+P +D+ G+T FT+    G+R   +  Y E W L AGEA+MQLVTP K
Sbjct:   19 LSNYKGTSGAVKGLVSGLTAVVNAFGVGGGD--VASSGSXXXXXXXXXXXXXXPSTPRNPTALAADIAREFTEAKYLWTGDINPEMYDLYCTFTDPTLSFAGLETFQRNLANLQPVLSRLVRDSDVEQLYSCELAGDGKGXXXXXAVRARWRMTGNLRVPWRPRIDLEGQTTFTFKDYGGDRGCLITAYQEEWGLSAGEAVMQLVTPFK 225          
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A7S2QSX3_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QSX3_9EUKA)

HSP 1 Score: 143 bits (360), Expect = 1.440e-37
Identity = 70/191 (36.65%), Postives = 111/191 (58.12%), Query Frame = 1
Query:  157 YAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKLS-------------PRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGK 690
            Y  T G  K +V GLT+  N I   +       +G+ S             P +L   I+EDF+++ YLWTG +  + Y+ DC+FTDPTLSF+G+ T+++N+ +L P +++LV +  + L S EL E    + A W M G ++LPW+P + + G+T +TY      R+V Y E+W + AG+AL+QL+ P +
Sbjct:   14 YEATSGPVKALVQGLTDLSNTIGLGE----AAMSGENSNTYLDSQPPQAYEPAELRDTIREDFLERNYLWTGALTASAYAPDCVFTDPTLSFKGVKTFERNLNNLSPAIDSLVNDPSIHLYSIELKEPSSQIVAEWEMDGRLRLPWKPRIKLRGQTVYTYSKERAGRIVRYDESWAVSAGQALLQLLKPSE 200          
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A812MSR3_SYMMI (GPI inositol-deacylase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812MSR3_SYMMI)

HSP 1 Score: 150 bits (378), Expect = 1.670e-37
Identity = 80/181 (44.20%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  151 SDYAGTGGIAKGIVSGLTNAFNAI-SPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFG--VDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTP 684
            S Y  +    K IV GLT+  N+  + A   E   +   +SP QL  GI+ DF +++YLW+G ID  LY E C FTDPT+SF+GLS ++ N+ +L+P+V+ALVP+      L   +L E  + V A+W M G + LPW P ++V G+TR+T  P E  R+  YFE W++PAGEAL QL+ P
Sbjct:   28 SSYESSPDWTKSIVGGLTDVVNSFGNGAVAGERSREFDAISPEQLLEGIRADFEERQYLWSGEIDTELYGESCSFTDPTISFQGLSKFESNMRNLKPIVDALVPKETRRCILRDIQLEESGEVV-AKWTMLGKVSLPWSPRINVGGKTRYT--PGEDGRIESYFEKWDIPAGEALGQLLKP 205          
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A812NH40_9DINO (GPI inositol-deacylase n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812NH40_9DINO)

HSP 1 Score: 149 bits (375), Expect = 1.030e-36
Identity = 82/200 (41.00%), Postives = 122/200 (61.00%), Query Frame = 1
Query:   94 HVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAI-SPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFG--VDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTP 684
            HV   +  A+ ++ S ++  D+       K IV GLT+  ++  + A   E   +   +SP QL  GI+ DF +++YLW+G ID  LY E C FTDPT+SF+GLS ++ N+ +L+P+V+ALVP+      L   +L E  + V A+W M G + LPW P ++V G+TR+T  P E  R+  YFE W++PAGEAL QL+ P
Sbjct:   36 HVRGGARRAEPERSSYESSPDW------TKSIVGGLTDVVHSFGNGAVAGERSREFDAISPEQLLEGIRADFEERQYLWSGEIDTELYGESCSFTDPTISFQGLSKFESNMRNLKPIVDALVPKETRRCILRDIQLEESGEVV-AKWTMLGKVSLPWSPRINVGGKTRYT--PGEDGRIESYFEKWDIPAGEALGQLLKP 226          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYI6_9STRA2.470e-156100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G2X2_ECTSI1.700e-5244.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S9RDB2_CHRCT5.210e-5044.44Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A061RRB7_9CHLO2.620e-4845.41Uncharacterized protein n=2 Tax=Tetraselmis sp. GS... [more]
A0A7S1DMA4_HEMAN6.540e-4644.74Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A813FI16_POLGL6.000e-3844.16Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
C1EIW1_MICCC1.090e-3740.19Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S2QSX3_9EUKA1.440e-3736.65Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]
A0A812MSR3_SYMMI1.670e-3744.20GPI inositol-deacylase n=1 Tax=Symbiodinium microa... [more]
A0A812NH40_9DINO1.030e-3641.00GPI inositol-deacylase n=1 Tax=Symbiodinium necroa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_57contigContig_57:701477..704009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|77805|CE77804_37
DescriptionUncharacterized conserved protein (DUF2358)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CINV@1|root,2S3RX@2759|Eukaryota
Evalue9.17e-55
Seed ortholog2880.D7G2X2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-09_004600.1
TranscriptId78127
TrackFilteredModels1
ProteinId77805
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|77805gene_8641Tribonema minus UTEX_B_3156 geneContig_57 701477..704009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|77805Trimin1|77805|CE77804_37Tribonema minus UTEX_B_3156 polypeptideContig_57 701522..703631 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8641_1exon_8641_1Tribonema minus UTEX_B_3156 exonContig_57 701477..701873 +
exon_8641_2exon_8641_2Tribonema minus UTEX_B_3156 exonContig_57 702416..702516 +
exon_8641_3exon_8641_3Tribonema minus UTEX_B_3156 exonContig_57 703425..704009 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_8641UTR5_8641Tribonema minus UTEX_B_3156 five_prime_UTRContig_57 701477..701521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8641CDS_8641Tribonema minus UTEX_B_3156 CDSContig_57 701522..701873 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8641UTR3_8641Tribonema minus UTEX_B_3156 three_prime_UTRContig_57 703632..704009 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8641 ID=mRNA_8641|Name=jgi.p|Trimin1|77805|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1083bp|location=Sequence derived from alignment at Contig_57:701477..704009+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGCACGCCTGTTCATGGCGGCGGCCCACGTTGCTGCTCGTGGCGATGTC
CATGCTGACGTTGGCGGCTGGCTTTCAAGTACCAGCACCGAGTCATGTTC
ACAGTGCCTCGTTAGCAGCCCAAACCAAACAGGACAGCAGCGACACGGTG
TCAGACTACGCGGGCACAGGCGGCATTGCGAAGGGTATCGTGTCTGGCCT
CACGAATGCCTTCAATGCCATATCCCCAGCTAAAGAGGAGGAAGTGGTCG
TGAAAGCAGGGAAGCTCTCACCAAGACAGCTGTTCACCGGCATCAAGGAG
GACTTCGTGGATAAGCGATACCTATGGACAGGACTGATTGACGACAACCT
GTACTCCGAGGACTGCCTATTCACCGACCCTACGTTGTCGTTCAGAGGGC
TCAGCACATGGAAGAAAAATGTGGGCAGCCTGCGGCCACTGGTGAATGCT
CTGGTGCCGGAGTTTGGCGTGGACCTGCTGTCCTGCGAACTCAACGAGAA
GGAAAAGTGCGTGCGCGCGCGCTGGCGCATGTGGGGCTACATCAAGCTCC
CATGGCAGCCGGCGGTGGACGTCATAGGGCGTACTCGTTTCACCTATGAC
CCCGCAGAGGGCAACCGCGTCGTGGACTACTTTGAGACGTGGGAGCTGCC
CGCAGGAGAGGCGCTCATGCAGCTGGTCACGCCGGGCAAGCGGCGCCAGC
AATGATGGTGATGATGCTCAGCTAGTGGCGATGATGCTCGGCAAGAAGCG
CCAGCAACAGTGGCGCTGATGATGCGCTTGTGGCAGAGGGCAAGCGGCAT
CAGCGATGCTGGTTATGATCTGCTGGTCATGTTGGGCAAGCGGCCAGCAG
TGGTATTTATGATCAATGCCGGGCAGGCGGTGCCAGCGATGGTGGTGCTG
ACCAGCTGGTCAACGCCGGGGCAAGAGGCGCCAGATTTTGACATTAGCAA
GAGGGCGCATGGGCTGTGTACTGCGTGTGGCCACAACACCCCCATGTTTT
TGATACGTCCTTGGCAGATTTTGACACAATTTACATGTAGTGCACCTGAC
AGGACGATCACACAGCGGGCAATTACACGGTCG
back to top

protein sequence of jgi.p|Trimin1|77805

>Trimin1|77805|CE77804_37 ID=Trimin1|77805|CE77804_37|Name=jgi.p|Trimin1|77805|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=220bp
MSMLTLAAGFQVPAPSHVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVS
GLTNAFNAISPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDD
NLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELN
EKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWE
LPAGEALMQLVTPGKRRQQ*
back to top

mRNA from alignment at Contig_57:701477..704009+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8641 ID=mRNA_8641|Name=jgi.p|Trimin1|77805|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2533bp|location=Sequence derived from alignment at Contig_57:701477..704009+ (Tribonema minus UTEX_B_3156 )
CGGCACGCCTGTTCATGGCGGCGGCCCACGTTGCTGCTCGTGGCGATGTC CATGCTGACGTTGGCGGCTGGCTTTCAAGTACCAGCACCGAGTCATGTTC ACAGTGCCTCGTTAGCAGCCCAAACCAAACAGGACAGCAGCGACACGGTG TCAGACTACGCGGGCACAGGCGGCATTGCGAAGGGTATCGTGTCTGGCCT CACGAATGCCTTCAATGCCATATCCCCAGCTAAAGAGGAGGAAGTGGTCG TGAAAGCAGGGAAGCTCTCACCAAGACAGCTGTTCACCGGCATCAAGGAG GACTTCGTGGATAAGCGATACCTATGGACAGGACTGATTGACGACAACCT GTACTCCGAGGACTGCCTATTCACCGACCCTACGTTGTCGTTCAGAGGTG AGTATGCCACACACGAACAGGCCATTTCTTCGTCTGTCCTGAAGTTAGTC CAGGCAGCCAGTGTCATCTGATCATCAGCCATTTGCTGTGATGAGAACCG CAACATGATACTGTGAGCTGTTGTCAGGCAAGCGGTGCGCCAGGTTTTTG CCGTATTGGAAACGGCAGCAAAGTATACTTATCTGACCTATTGTATCCCA AGGTTGTCGTACACCGCCTAGTAGCTTGTATAGATCAGTCCTGATTTCAT TGTCAGCTGTTAGCCTACTGAATTCAATGGGGTCGTCACAACTGCATGCT CAGAGTCGTCTTTACGACTCCGCTCAGACTCCACTCCGGCCAGAGTCGCT GTTGGAGTCACACGATGATTGCACAGCCCTCAAGAGCGGAGACGAAGCCG TTAAAGCGCACAGATCACCACCACTCTGCGGAGCGAAGTTGCAGTCACAT TTTGTGATAAGCCATAAAATCATGCAGCTCGTGTCGTCACCACTCTCACC TGAGCACTGACACGTGTCTCTCCTTCTTCTTTCACACAGGGCTCAGCACA TGGAAGAAAAATGTGGGCAGCCTGCGGCCACTGGTGAATGCTCTGGTGCC GGAGTTTGGCGTGGACCTGCTGTCCTGCGAACTCAACGAGGTACGCTTTG TAACTGATGTAACTGTAGCACTCTCTGGGCGGTTGCCTTTATGTATACTT TGATATTTATTTCTGTTGTAATTGTAGCATTTGCGGGTCTGGCTACTTTT CTTCAATCTTACCGGGACAATTGTGAACGGTTGTCACAGCTCATGCTTGC AAGGGCAACTCAGCGGCCACTGATGCTGTGCTGTTGTGTGATATCCTCTG GAGTCTATGGCTCAACCTAGTATTGCAGGCCAAAGCTGGCAGCTGCAGTG GATATTTGGCGCTAATCTCTGTGTCGGATCCCGTATCATGTACTGCAAGT AGGTAGTGTTGTCAATCGCGGCATGACCTTTGCAGAGACAGTGAGACAGA TTTGAGACCTGCGCAGCTCTGGTACTTGAAACTCATGGTTCGGCGAGATG CCGACGATACAGAAAAGAGGGCTTAAAGGTAGTGGATGTGCGCGGCGACC AGTTCTTCAACTTCCATTTGAGGTTTGCTGCTGCTGTCCACTGTATTGTA GACTGTGTATTACTGTGAACTGTGCCATGGAGTCATACATGCATGCCCTC ACACCCATTGCCCGTCTCAGAGTACGCCCGTGAACGACATGCGCCTCGCA GAAGGAAAAGCTGGCGCGTGTGGGGCTACTCACCATGTACATATTTGGGG GTGCAAATACGTCAAACATTGTGTCTCATATTTGACTGCGCCCTCCATGT TGTGGTCTTAACATTCGCCTGCGCTCGCACGCGAGGTCCGCAGAAGGAGA AGTGCGTACGCTCGCACTGACACTGTGGGGCTGCTCACCATTTACACACC TGCAACTGCGAATACGTCAAACATATTATATCACGTATGACGGCACCCTT GTTGTTGTGGTCACAACATTCGCCACCGCTCGCACGCGCGCGCTGCAGAA GGAAAAGTGCGTGCGCGCGCGCTGGCGCATGTGGGGCTACATCAAGCTCC CATGGCAGCCGGCGGTGGACGTCATAGGGCGTACTCGTTTCACCTATGAC CCCGCAGAGGGCAACCGCGTCGTGGACTACTTTGAGACGTGGGAGCTGCC CGCAGGAGAGGCGCTCATGCAGCTGGTCACGCCGGGCAAGCGGCGCCAGC AATGATGGTGATGATGCTCAGCTAGTGGCGATGATGCTCGGCAAGAAGCG CCAGCAACAGTGGCGCTGATGATGCGCTTGTGGCAGAGGGCAAGCGGCAT CAGCGATGCTGGTTATGATCTGCTGGTCATGTTGGGCAAGCGGCCAGCAG TGGTATTTATGATCAATGCCGGGCAGGCGGTGCCAGCGATGGTGGTGCTG ACCAGCTGGTCAACGCCGGGGCAAGAGGCGCCAGATTTTGACATTAGCAA GAGGGCGCATGGGCTGTGTACTGCGTGTGGCCACAACACCCCCATGTTTT TGATACGTCCTTGGCAGATTTTGACACAATTTACATGTAGTGCACCTGAC AGGACGATCACACAGCGGGCAATTACACGGTCG
back to top

Coding sequence (CDS) from alignment at Contig_57:701477..704009+

>mRNA_8641 ID=mRNA_8641|Name=jgi.p|Trimin1|77805|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=660bp|location=Sequence derived from alignment at Contig_57:701477..704009+ (Tribonema minus UTEX_B_3156 )
ATGTCCATGCTGACGTTGGCGGCTGGCTTTCAAGTACCAGCACCGAGTCA
TGTTCACAGTGCCTCGTTAGCAGCCCAAACCAAACAGGACAGCAGCGACA
CGGTGTCAGACTACGCGGGCACAGGCGGCATTGCGAAGGGTATCGTGTCT
GGCCTCACGAATGCCTTCAATGCCATATCCCCAGCTAAAGAGGAGGAAGT
GGTCGTGAAAGCAGGGAAGCTCTCACCAAGACAGCTGTTCACCGGCATCA
AGGAGGACTTCGTGGATAAGCGATACCTATGGACAGGACTGATTGACGAC
AACCTGTACTCCGAGGACTGCCTATTCACCGACCCTACGTTGTCGTTCAG
AGGGCTCAGCACATGGAAGAAAAATGTGGGCAGCCTGCGGCCACTGGTGA
ATGCTCTGGTGCCGGAGTTTGGCGTGGACCTGCTGTCCTGCGAACTCAAC
GAGAAGGAAAAGTGCGTGCGCGCGCGCTGGCGCATGTGGGGCTACATCAA
GCTCCCATGGCAGCCGGCGGTGGACGTCATAGGGCGTACTCGTTTCACCT
ATGACCCCGCAGAGGGCAACCGCGTCGTGGACTACTTTGAGACGTGGGAG
CTGCCCGCAGGAGAGGCGCTCATGCAGCTGGTCACGCCGGGCAAGCGGCG
CCAGCAATGA
back to top