mRNA_8641 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A835YYI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI6_9STRA) HSP 1 Score: 446 bits (1148), Expect = 2.470e-156 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1
Query: 46 MSMLTLAAGFQVPAPSHVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKRRQQ 702
MSMLTLAAGFQVPAPSHVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKRRQQ
Sbjct: 1 MSMLTLAAGFQVPAPSHVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKRRQQ 219
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: D7G2X2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X2_ECTSI) HSP 1 Score: 183 bits (464), Expect = 1.700e-52 Identity = 97/217 (44.70%), Postives = 134/217 (61.75%), Query Frame = 1
Query: 85 APSHVHSAS---LAAQTKQDSSDT------VSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKA-----GKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKR 693
APSH + + LA + +Q DT VS++ T G K V GLT+ F + E+ + A LS +L GI++++ K YLWTG I+++LY EDC FTDPTLSF GLST+K+NVGSL+ +++ V L SCEL +++ CV+ RWRM G ++LPW P +DV+GRT F+YD + GNR+ Y E WE+ A EALMQ+ PG R
Sbjct: 19 APSHRYRSRALRLAPRQEQGEGDTDSHSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYA-KNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGTR 234
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A6S9RDB2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9RDB2_CHRCT) HSP 1 Score: 184 bits (466), Expect = 5.210e-50 Identity = 88/198 (44.44%), Postives = 129/198 (65.15%), Query Frame = 1
Query: 118 AQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAIS-PAKEEEVVVKAGK-----LSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKR 693
A+ ++ +D+ GT +G+VS LT NA+S +E ++A L+P +L G+++D+V ++YLWTG ID NLY DC+FTDPTLSF+GLST+++N+ +L+PL++ALV + VDL S E ++A WRM G I LPW P +D+ G T FTYDP +GNR+ +Y E+W++ A AL QL+ PG R
Sbjct: 298 AEPERTGGTPAADFQGTSPFVQGVVSSLTALVNAVSGKTMDEPAALEADSELRPPLTPSELLEGVRDDYVARKYLWTGDIDPNLYDSDCVFTDPTLSFKGLSTFQRNIANLKPLLDALVRDPVVDLYSISSTVDETQIKATWRMKGEIALPWAPVIDLTGSTVFTYDPLKGNRITEYTESWDISAASALGQLLRPGAR 495
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A061RRB7_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RRB7_9CHLO) HSP 1 Score: 173 bits (438), Expect = 2.620e-48 Identity = 84/185 (45.41%), Postives = 119/185 (64.32%), Query Frame = 1
Query: 151 SDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGK-----LSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGK 690
S + T + K IVSGLT A N S + E V + +SP+QL G+++DF + YLW+G ID NLY DC FTDPTLSF+GL T+++N+ +L+P ++ LV +L+ +L E VRARWRM G I+LPW P +++ GRTRF Y+P +G RV +YFE W++ EAL+QL+ P +
Sbjct: 78 SSHNSTNFVVKSIVSGLTKAINWTSGSPPERVDYSTEEDTRAPVSPQQLLWGVEKDFTENGYLWSGAIDTNLYCRDCTFTDPTLSFKGLETFERNLRNLQPWIDRLVRNEVCELIDIQLLEDSNEVRARWRMKGDIQLPWGPQINLTGRTRFCYNPDKGGRVEEYFEEWDISGAEALLQLLRPAR 262
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A7S1DMA4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMA4_HEMAN) HSP 1 Score: 167 bits (422), Expect = 6.540e-46 Identity = 85/190 (44.74%), Postives = 124/190 (65.26%), Query Frame = 1
Query: 127 KQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVV---KAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPE-FGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTP 684
++D++ T S + G+ K IVSGLTN NA+ E+ + + +S ++L GIK D+ ++RYLWTG ID LY DC+FTDPTLSF+GL T++ N+ +LRP ++ LV + V++ C+L E V+A WRM G +K+PW P +D+ G T FTY P++GNR+VDY E WE P + L+QL+ P
Sbjct: 79 EEDTTKTTSYGQSSTGV-KAIVSGLTNLVNAVMQRGEDPSKLDRPQRDDISEQELLEGIKGDY-ERRYLWTGEIDPYLYDYDCVFTDPTLSFKGLKTFQSNLANLRPFIDFLVQDDCSVEMYGCDLVLGEPQVKASWRMVGRLKVPWTPTIDLNGTTVFTYSPSKGNRIVDYQEVWETPPSKVLLQLLVP 266
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A813FI16_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FI16_POLGL) HSP 1 Score: 145 bits (367), Expect = 6.000e-38 Identity = 87/197 (44.16%), Postives = 116/197 (58.88%), Query Frame = 1
Query: 139 SDTVSDYAGTGGIA-KGIVSGLTNAFNAIS---PAKEEEVVVKAGK---LSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGV--DLLSCELNEKEKCVRARWRMWGYIK-LPWQPAVDVIGRTRFTYD-----PAEGNRVVDYFETWELPAGEALMQLVTP 684
S+ S + + G+A KGIVS LTN N+ S P+ EE A SP++L I+ED+ K YLWTG ID + + C FTDPTLSF G + KN+ +LRP+V+AL G DLL +L + ++ RW M G + LPW+P +DVIGRT+F Y P E V Y E WE+PAG+AL+QL+TP
Sbjct: 50 SERPSRFEDSEGVASKGIVSSLTNLVNSFSSSGPSLEESSTSPAAASSPASPQELLERIREDYTVKNYLWTGDIDLSAFDRQCQFTDPTLSFTGTDQFVKNLQNLRPIVDALTRPGGCRSDLLDIQLFPDQGYIQTRWNMIGELSALPWKPQIDVIGRTKFWYRADEQAPDERFNVFFYDEEWEIPAGKALLQLITP 246
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: C1EIW1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EIW1_MICCC) HSP 1 Score: 144 bits (363), Expect = 1.090e-37 Identity = 84/209 (40.19%), Postives = 117/209 (55.98%), Query Frame = 1
Query: 148 VSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKL------------------SPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVD-LLSCELNEKEK------CVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNR---VVDYFETWELPAGEALMQLVTPGK 690
+S+Y GT G KG+VSGLT NA + V +G +P L I +F + +YLWTG I+ +Y C FTDPTLSF GL T+++N+ +L+P+++ LV + V+ L SCEL K VRARWRM G +++PW+P +D+ G+T FT+ G+R + Y E W L AGEA+MQLVTP K
Sbjct: 19 LSNYKGTSGAVKGLVSGLTAVVNAFGVGGGD--VASSGSXXXXXXXXXXXXXXPSTPRNPTALAADIAREFTEAKYLWTGDINPEMYDLYCTFTDPTLSFAGLETFQRNLANLQPVLSRLVRDSDVEQLYSCELAGDGKGXXXXXAVRARWRMTGNLRVPWRPRIDLEGQTTFTFKDYGGDRGCLITAYQEEWGLSAGEAVMQLVTPFK 225
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A7S2QSX3_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QSX3_9EUKA) HSP 1 Score: 143 bits (360), Expect = 1.440e-37 Identity = 70/191 (36.65%), Postives = 111/191 (58.12%), Query Frame = 1
Query: 157 YAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAGKLS-------------PRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGK 690
Y T G K +V GLT+ N I + +G+ S P +L I+EDF+++ YLWTG + + Y+ DC+FTDPTLSF+G+ T+++N+ +L P +++LV + + L S EL E + A W M G ++LPW+P + + G+T +TY R+V Y E+W + AG+AL+QL+ P +
Sbjct: 14 YEATSGPVKALVQGLTDLSNTIGLGE----AAMSGENSNTYLDSQPPQAYEPAELRDTIREDFLERNYLWTGALTASAYAPDCVFTDPTLSFKGVKTFERNLNNLSPAIDSLVNDPSIHLYSIELKEPSSQIVAEWEMDGRLRLPWKPRIKLRGQTVYTYSKERAGRIVRYDESWAVSAGQALLQLLKPSE 200
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A812MSR3_SYMMI (GPI inositol-deacylase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812MSR3_SYMMI) HSP 1 Score: 150 bits (378), Expect = 1.670e-37 Identity = 80/181 (44.20%), Postives = 113/181 (62.43%), Query Frame = 1
Query: 151 SDYAGTGGIAKGIVSGLTNAFNAI-SPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFG--VDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTP 684
S Y + K IV GLT+ N+ + A E + +SP QL GI+ DF +++YLW+G ID LY E C FTDPT+SF+GLS ++ N+ +L+P+V+ALVP+ L +L E + V A+W M G + LPW P ++V G+TR+T P E R+ YFE W++PAGEAL QL+ P
Sbjct: 28 SSYESSPDWTKSIVGGLTDVVNSFGNGAVAGERSREFDAISPEQLLEGIRADFEERQYLWSGEIDTELYGESCSFTDPTISFQGLSKFESNMRNLKPIVDALVPKETRRCILRDIQLEESGEVV-AKWTMLGKVSLPWSPRINVGGKTRYT--PGEDGRIESYFEKWDIPAGEALGQLLKP 205
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Match: A0A812NH40_9DINO (GPI inositol-deacylase n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812NH40_9DINO) HSP 1 Score: 149 bits (375), Expect = 1.030e-36 Identity = 82/200 (41.00%), Postives = 122/200 (61.00%), Query Frame = 1
Query: 94 HVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAI-SPAKEEEVVVKAGKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFG--VDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTP 684
HV + A+ ++ S ++ D+ K IV GLT+ ++ + A E + +SP QL GI+ DF +++YLW+G ID LY E C FTDPT+SF+GLS ++ N+ +L+P+V+ALVP+ L +L E + V A+W M G + LPW P ++V G+TR+T P E R+ YFE W++PAGEAL QL+ P
Sbjct: 36 HVRGGARRAEPERSSYESSPDW------TKSIVGGLTDVVHSFGNGAVAGERSREFDAISPEQLLEGIRADFEERQYLWSGEIDTELYGESCSFTDPTISFQGLSKFESNMRNLKPIVDALVPKETRRCILRDIQLEESGEVV-AKWTMLGKVSLPWSPRINVGGKTRYT--PGEDGRIESYFEKWDIPAGEALGQLLKP 226 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|77805 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8641 ID=mRNA_8641|Name=jgi.p|Trimin1|77805|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1083bp|location=Sequence derived from alignment at Contig_57:701477..704009+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGGCACGCCTGTTCATGGCGGCGGCCCACGTTGCTGCTCGTGGCGATGTCback to top protein sequence of jgi.p|Trimin1|77805 >Trimin1|77805|CE77804_37 ID=Trimin1|77805|CE77804_37|Name=jgi.p|Trimin1|77805|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=220bp MSMLTLAAGFQVPAPSHVHSASLAAQTKQDSSDTVSDYAGTGGIAKGIVSback to top mRNA from alignment at Contig_57:701477..704009+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8641 ID=mRNA_8641|Name=jgi.p|Trimin1|77805|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2533bp|location=Sequence derived from alignment at Contig_57:701477..704009+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_57:701477..704009+ >mRNA_8641 ID=mRNA_8641|Name=jgi.p|Trimin1|77805|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=660bp|location=Sequence derived from alignment at Contig_57:701477..704009+ (Tribonema minus UTEX_B_3156 )back to top |