mRNA_8628 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350156
Unique NamemRNA_8628
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350156 vs. uniprot
Match: A0A835YK52_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK52_9STRA)

HSP 1 Score: 188 bits (477), Expect = 5.230e-59
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 1 
Query:    1 MSGSESEGGPAWKRFSSCSGXXXXXXXXXXXXXXXXXXGQESGVAEADAAEGRVVAEWLASTLATVPDSRGMLKRAVALPESCLRTLLLNADEMILERTRAAEREAECEPFDALASATEELEPDARD 381
            MSGSESEGGPAWKRFSSCSG XXXXXXXXXXXXXXXXXGQE GVAEADAAEGRVVAEWLASTLATVPDSRGMLKRA+ALP+SCLRTLLLNADEMILERTRAAEREAE  PFDALA+ATEELEPDARD
Sbjct:    1 MSGSESEGGPAWKRFSSCSGGXXXXXXXXXXXXXXXXXGQEDGVAEADAAEGRVVAEWLASTLATVPDSRGMLKRAIALPDSCLRTLLLNADEMILERTRAAEREAEFGPFDALANATEELEPDARD 127
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350156 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YK52_9STRA5.230e-5994.49Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_57contigContig_57:608631..609994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350156|estExt_Genemark1.C_Ctg_570081
Hectar predicted targeting categoryother localisation
TranscriptId350478
TrackFilteredModels1
ProteinId350156
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350156gene_8628Tribonema minus UTEX_B_3156 geneContig_57 608631..609994 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8628_1exon_8628_1Tribonema minus UTEX_B_3156 exonContig_57 608631..608677 +
exon_8628_2exon_8628_2Tribonema minus UTEX_B_3156 exonContig_57 609033..609401 +
exon_8628_3exon_8628_3Tribonema minus UTEX_B_3156 exonContig_57 609949..609994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8628CDS_8628Tribonema minus UTEX_B_3156 CDSContig_57 608631..608677 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8628UTR3_8628Tribonema minus UTEX_B_3156 three_prime_UTRContig_57 609370..609401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350156Trimin1|350156|estExt_Genemark1.C_Ctg_570081Tribonema minus UTEX_B_3156 polypeptideContig_57 608631..609369 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8628 ID=mRNA_8628|Name=jgi.p|Trimin1|350156|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_57:608631..609994+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGGAGCGAGAGTGAGGGTGGGCCTGCCTGGAAGCGGTTCAGCAG
CTGCAGTGGTGGCGGCGGCAGCAGCGGCGGCAGTGCCAGCAGCAGCAGGG
ACTCCAGCAGCAGCGGACAGGAGAGTGGCGTGGCTGAGGCCGATGCTGCG
GAAGGGCGTGTAGTCGCCGAGTGGCTGGCCTCAACGCTGGCAACAGTGCC
GGATTCTCGTGGCATGCTCAAACGAGCGGTTGCTCTCCCTGAGAGCTGCC
TCCGCACGTTGCTGCTGAACGCGGATGAGATGATCTTGGAGAGGACTAGG
GCTGCGGAGCGGGAGGCGGAGTGCGAGCCCTTCGATGCCTTAGCGAGCGC
CACCGAAGAGCTGGAGCCAGATGCGCGGGATTAGAGCACAAGGATGACGG
CAGCGACGCTTGTCAGCGGGCTATCTGTCGCACATTTGCCGGACGGCTCG
TGGAGCTCGCCC
back to top

protein sequence of jgi.p|Trimin1|350156

>Trimin1|350156|estExt_Genemark1.C_Ctg_570081 ID=Trimin1|350156|estExt_Genemark1.C_Ctg_570081|Name=jgi.p|Trimin1|350156|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
MSGSESEGGPAWKRFSSCSGGGGSSGGSASSSRDSSSSGQESGVAEADAA
EGRVVAEWLASTLATVPDSRGMLKRAVALPESCLRTLLLNADEMILERTR
AAEREAECEPFDALASATEELEPDARD*
back to top

mRNA from alignment at Contig_57:608631..609994+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8628 ID=mRNA_8628|Name=jgi.p|Trimin1|350156|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1364bp|location=Sequence derived from alignment at Contig_57:608631..609994+ (Tribonema minus UTEX_B_3156 )
ATGAGCGGGAGCGAGAGTGAGGGTGGGCCTGCCTGGAAGCGGTTCAGGTC
CACACCTGGAGTCAGCAAATGGGTCGGCAAGGATTGCCACTTGTGCAAGG
AGCCGATACCATTCGGCGTAAAGCCCAAAAGCAGCAAGCAGGGCAACGGA
AAGCCCTTATTGCACACCTTGCACCGAGCAGGAGTGGTCCGAGTCCGAGC
GAGAGCAGAAGCAGCTTGCGCCGCCAAAGAAGTCGCCATGCGTCTTTGAC
AGCAGCTGCCCTCTGCCGGCCTTATGGGGGTTCCCAGGAGACCAACACCC
AGTGCTGTGCAAGGAGCATAGGCACCAGGCCCCAGGCATTCAGTTTTGGA
AAAGTGGGAACACGGCGGAGGGTGCTGGTGCAAGTGTGGCTGGGCTTTGC
AGCAGCTGCAGTGGTGGCGGCGGCAGCAGCGGCGGCAGTGCCAGCAGCAG
CAGGGACTCCAGCAGCAGCGGACAGGAGAGTGGCGTGGCTGAGGCCGATG
CTGCGGAAGGGCGTGTAGTCGCCGAGTGGCTGGCCTCAACGCTGGCAACA
GTGCCGGATTCTCGTGGCATGCTCAAACGAGCGGTTGCTCTCCCTGAGAG
CTGCCTCCGCACGTTGCTGCTGAACGCGGATGAGATGATCTTGGAGAGGA
CTAGGGCTGCGGAGCGGGAGGCGGAGTGCGAGCCCTTCGATGCCTTAGCG
AGCGCCACCGAAGAGCTGGAGCCAGATGCGCGGGATTAGAGCACAAGGAT
GACGGCAGCGACGCTTGTCAGGTAAGAGAAGCAGGATGCTTGATGCAGCC
GCATGGGATGGTCTGGTTGGTTTTGAGTTTTTGCCACATGCTTTTGCCGC
TTCTGATCAATCTGAAGATCATGCTCAACAAATTCCACGGGCAGCAAAAT
GGTGATGCTGACGATGGATGTCGTGGTCAGAAAGGTGCCTGCATTGGGCA
TGTTTTGGTTGTGACAGGTGTGCGCAGCGTCAGACACGTCAGTGTCCCTG
CTACTTACGTATGAGGCTACCCCGTGTGCCTAATCGCGCAGCGTGGCTCT
TGCCGCTTGACTGCCATCACACCGCGCCCTGCGTCGCACGGCCGCCGGAT
GGCCGCGCGCATGATTGTCACAATCACACCCAACCCAACGCTGAGCTTAT
GCGCGCCGCGCTGTGCCGGCTGTTTGCCATTGCCGCAGACGGCAATGTGT
CGCACATGTTGTGCAGCGTGCACACGCATCGCTGCCACAATCCCCGCGCG
CGTTGTCATCACACCCAACCCAAGGCTCACGTCATGCACACTGTGTCGGC
TGTTTGCCACTGGCGCAGCGGGCTATCTGTCGCACATTTGCCGGACGGCT
CGTGGAGCTCGCCC
back to top

Coding sequence (CDS) from alignment at Contig_57:608631..609994+

>mRNA_8628 ID=mRNA_8628|Name=jgi.p|Trimin1|350156|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_57:608631..609994+ (Tribonema minus UTEX_B_3156 )
ATGAGCGGGAGCGAGAGTGAGGGTGGGCCTGCCTGGAAGCGGTTCAGCAG
CTGCAGTGGTGGCGGCGGCAGCAGCGGCGGCAGTGCCAGCAGCAGCAGGG
ACTCCAGCAGCAGCGGACAGGAGAGTGGCGTGGCTGAGGCCGATGCTGCG
GAAGGGCGTGTAGTCGCCGAGTGGCTGGCCTCAACGCTGGCAACAGTGCC
GGATTCTCGTGGCATGCTCAAACGAGCGGTTGCTCTCCCTGAGAGCTGCC
TCCGCACGTTGCTGCTGAACGCGGATGAGATGATCTTGGAGAGGACTAGG
GCTGCGGAGCGGGAGGCGGAGTGCGAGCCCTTCGATGCCTTAGCGAGCGC
CACCGAAGAGCTGGAGCCAGATGCGCGGGATTAG
back to top