mRNA_8621 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154756
Unique NamemRNA_8621
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: A0A835YPN0_9STRA (NADH dehydrogenase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN0_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.480e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 VAQGLRNAIFKSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            VAQGLRNAIFKSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL
Sbjct:    1 VAQGLRNAIFKSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 99
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BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: D7FPR2_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.600e-30
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 VAQGLRNAIFKSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            +A GL N + KS G    G+ +P   LYR+I +E+PR+LTIYDVDMD A AR  +   FR NGHL+DP V+  +V KGYM+LEET +Q+KQ+THL+RLL
Sbjct:    1 MASGLGNYMMKSVGPSRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQARAAIALYFRNNGHLKDPRVVDALVMKGYMDLEETTMQYKQKTHLLRLL 99
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BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: A0A4D9D5Z3_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Z3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.740e-28
Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:   28 FKSGGGFLGGSTAP---IMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            FK+   ++G    P   ++ LYR+I +E+PRVLTIYD D+ PA AR +V  LFRKN HLQDP ++ ++V KGYMELEET++Q+KQ+THL+RLL
Sbjct:    3 FKAVASYMGKEKTPRNPVVQLYRTISKELPRVLTIYDADLAPAEARAQVQVLFRKNAHLQDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLL 95
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BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: A0A485LSK2_9STRA (Aste57867_25210 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSK2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.050e-22
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   49 LGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            LGGST P + LYR I +++PRVLT+YD+ M+PA AR  V   FRKN  ++DP V+ ++++K  MELEET++Q+KQ+ HL  LL
Sbjct:   10 LGGST-PAVTLYRQITKQVPRVLTLYDISMEPAQARLAVQAFFRKNADVKDPRVVDMLITKAGMELEETLMQWKQKAHLQTLL 91
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BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: A0A7S3GV22_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV22_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.290e-22
Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   70 IMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            +  LYRSI +E+PRVL IYDVDM    A+  +   FRK+GHL+D  VI ++++KGYMELEET++Q+KQ+THL+R+L
Sbjct:   20 VSQLYRSIIKELPRVLIIYDVDMPMKTAKTAIQYHFRKHGHLKDGNVIGMLMAKGYMELEETLMQWKQKTHLLRVL 95
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BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: A0A067CET6_SAPPC (Complex1_LYR_dom domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CET6_SAPPC)

HSP 1 Score: 90.9 bits (224), Expect = 1.480e-21
Identity = 41/79 (51.90%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:   61 TAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            T P + LYR I +++PRVLT+YD++M+P  AR  V   FRKN  ++DP VI +++SK  MELEET++Q+KQ++HL+ LL
Sbjct:    7 TNPAVTLYRHITKQVPRVLTLYDINMEPREARLAVQAFFRKNAEIKDPRVIDMLISKANMELEETLMQWKQKSHLLTLL 85
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BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: A0A024FTL2_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024FTL2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.750e-21
Identity = 39/79 (49.37%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:   61 TAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            ++P + LYR I +++PRVLT+YD+ M+P+ AR  +  LFRKN +++DP V+ ++++K  MELEET+LQ+KQ+ HL+ LL
Sbjct:   15 SSPAVTLYRYIIKQVPRVLTLYDITMEPSEARLAIQALFRKNANIKDPRVVDMLITKANMELEETLLQWKQKVHLLTLL 93
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BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: K3W7P5_GLOUD (Complex1_LYR_dom domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7P5_GLOUD)

HSP 1 Score: 90.5 bits (223), Expect = 3.310e-21
Identity = 40/82 (48.78%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   52 GGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            G +++P + LYR I +++PRVLT+YD+ M+PA AR  V  LFRK+  ++DP V+ ++++K  MELEET++Q+KQ+ HL+ LL
Sbjct:   12 GKTSSPAVTLYRYITKQVPRVLTLYDISMEPAEARLAVQALFRKHADVKDPRVVDMLITKANMELEETLMQWKQKVHLLTLL 93
[Close]
BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: A0A1V9YKZ4_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKZ4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.500e-21
Identity = 41/79 (51.90%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:   61 TAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            T P + LYR I +++PRVLT+YD++M+P  AR  V   FRKN  ++DP VI +++SK  MELEET++Q+KQ+ HL+ LL
Sbjct:   13 TNPAVTLYRHITKQVPRVLTLYDINMEPREARLAVQAFFRKNAEIKDPRVIDMLISKANMELEETLMQWKQKAHLVTLL 91
[Close]
BLAST of jgi.p|Trimin1|154756 vs. uniprot
Match: A0A6S8YN63_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YN63_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.150e-21
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   67 PIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMR 291
            P   LYRSI +E+PRV+TIYD+D+    AR  + + FRKN HL+D  V+ +++  GYM+LEET+LQ KQR+HL+R
Sbjct:   18 PSARLYRSIVKELPRVMTIYDIDVPLPEARNSIRDHFRKNAHLKDDRVVSMLIETGYMDLEETLLQHKQRSHLIR 92
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154756 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPN0_9STRA1.480e-63100.00NADH dehydrogenase (Fragment) n=1 Tax=Tribonema mi... [more]
D7FPR2_ECTSI3.600e-3055.56NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
A0A4D9D5Z3_9STRA1.740e-2855.91Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A485LSK2_9STRA3.050e-2253.01Aste57867_25210 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3GV22_9STRA6.290e-2256.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A067CET6_SAPPC1.480e-2151.90Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A024FTL2_9STRA2.750e-2149.37Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
K3W7P5_GLOUD3.310e-2148.78Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A1V9YKZ4_9STRA3.500e-2151.90Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A6S8YN63_9STRA6.150e-2153.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_57contigContig_57:554084..555628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154756|gw1.57.128.1
DescriptionNADH dehydrogenase (Ubiquinone). Source PGD
COG categoryC
Max annot lvl121069|Pythiales
EggNOG OGsKOG3426@1|root,KOG3426@2759|Eukaryota,1MH38@121069|Pythiales
Evalue3.64e-22
Seed ortholog115417.EPrPW00000026840
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-20_001030.1
TranscriptId155078
TrackFilteredModels1
ProteinId154756
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154756gene_8621Tribonema minus UTEX_B_3156 geneContig_57 554084..555628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154756Trimin1|154756|gw1.57.128.1Tribonema minus UTEX_B_3156 polypeptideContig_57 554084..555628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8621_2exon_8621_2Tribonema minus UTEX_B_3156 exonContig_57 554084..554230 -
exon_8621_1exon_8621_1Tribonema minus UTEX_B_3156 exonContig_57 555479..555628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8621CDS_8621Tribonema minus UTEX_B_3156 CDSContig_57 555479..555628 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8621 ID=mRNA_8621|Name=jgi.p|Trimin1|154756|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_57:554084..555628- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGGCGCAGGGCTTGCGAAATGCGATTTTCAAGAGTGGTGGCGGTTTCTT
GGGAGGCAGCACGGCCCCCATCATGGACCTCTACCGCAGCATCTGCAGGG
AAATTCCACGGGTGTTGACTATCTACGATGTCGACATGGACCCTGCAGTG
GCGCGGCGCAAGGTCAACGAGCTGTTCCGCAAGAACGGGCACTTGCAGGA
CCCTGAGGTCATCAAGATCGTCGTGAGCAAGGGGTACATGGAGCTGGAGG
AGACGGTGCTGCAGTTCAAGCAACGGACGCATCTCATGCGGCTTCTC
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protein sequence of jgi.p|Trimin1|154756

>Trimin1|154756|gw1.57.128.1 ID=Trimin1|154756|gw1.57.128.1|Name=jgi.p|Trimin1|154756|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=99bp
VAQGLRNAIFKSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAV
ARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL
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mRNA from alignment at Contig_57:554084..555628-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8621 ID=mRNA_8621|Name=jgi.p|Trimin1|154756|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1545bp|location=Sequence derived from alignment at Contig_57:554084..555628- (Tribonema minus UTEX_B_3156 )
GTGGCGCAGGGCTTGCGAAATGCGATTTTCAAGAGTGGTGGCGGTTTCTT
GGGAGGCAGCACGGCCCCCATCATGGACCTCTACCGCAGCATCTGCAGGG
AAATTCCACGGGTGTTGACTATCTACGATGTCGACATGGACCCTGCAGTG
GTGAGCCCCACCATCTTGTGCTCGTTGTATGCTTGCAGCACTGCTGGCCT
AGACTAATGCGGTCTCACACGAAAAACTTGCTGCAAAAATGTGAATTTGT
ACATTTCAGACAAATTCACATTTTTGCAGCAATTTGCACAAAGGTGCCAT
GACATATATCAGGTAACTGGTTAAGTTTGTGTGCTGCAGGTGGCCTTGTA
CCTCTACAGCGATCGACCCAAGTTCAGCAGCGTTTAGTGCTGCTCAGCCC
GCGCTTGTACCTCTACAGTGATCGACCCACGTTCAGCAGCGTTGAGTGCT
GCTCAGCCCGCGGGCCCGATGAACAGCACATAGCTGCTCTTGCTGTTCAT
TCATTCGCTTAAATGCGAGCGTGGCAGCGACAAAAAGCCAAAGATGCCTT
GCCAGAGGGACCTGGGGGCTCGCGCTCAGGGTTAGGACCACTTGAACTTC
TCATACATGATTGCCCACGGCCCAGAGCACGCATGAGCCAGTGGGCAGAG
GCAGCTGACGTTCCGTTTTATGGCGGACGCGTATGAACTTCTGATGCATG
ATTGTGCACAGCCCCCAAGCATGCACAAGCCAGGGGGCAGAGGCAGCTGA
CGTCCCGTTCGTGGAGGCATATGGCACGTGTATAGGTTTGAGATCAACCG
TTTCATGGTACACCCTAATAATCAATTGCAGGCAGTAATTTGTGGCTTTA
TCGTCAGTCTGGTCTGGTCATCTGAGCCATCACGCTGACTGCGACTCCAT
CAACAAGTGATGCCGCTTCGGCTCGGAATTGCAGCTCTAGTGGCAGACAT
TTGAAGTAGTTGCTTGAACAACTGAACAGCAGCGTTACGGGGTTGCCTGA
GCATGTCATCAAGGGGCGCCAGTCCTATGACAACTCACGTTTGTAACGGC
CATTGTGGACTCAGTGCTGCTGAGGCATTTACAGCATCAGGCGCACAACC
TGCAGTACGAGGGCAGGCACATACATTATTCATCTGGTTTATGCATGGGG
ATGGAAGCACAGTTGTGGATGTCCGCTTTCGCTCACACGGTGGTGGCATA
CACACTGTAGGCGTTCACAGTGTTATCACAAGGCGTCCTGCAGTGATCTG
GTTGCTCTCTCTGGCACCCTGCGCGCGAGCGATGCTCATTGCGGTATACT
CTACCTGCCGCTGCTGCTGCTGCGCATTGTGCGATACCCTACCTACCCCC
CCTGCTGATGATGCTCACTGTGCCATACCATACCTACCGTTATGCTAGGC
GCGGCGCAAGGTCAACGAGCTGTTCCGCAAGAACGGGCACTTGCAGGACC
CTGAGGTCATCAAGATCGTCGTGAGCAAGGGGTACATGGAGCTGGAGGAG
ACGGTGCTGCAGTTCAAGCAACGGACGCATCTCATGCGGCTTCTC
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Coding sequence (CDS) from alignment at Contig_57:554084..555628-

>mRNA_8621 ID=mRNA_8621|Name=jgi.p|Trimin1|154756|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=297bp|location=Sequence derived from alignment at Contig_57:554084..555628- (Tribonema minus UTEX_B_3156 )
GTGGCGCAGGGCTTGCGAAATGCGATTTTCAAGAGTGGTGGCGGTTTCTT
GGGAGGCAGCACGGCCCCCATCATGGACCTCTACCGCAGCATCTGCAGGG
AAATTCCACGGGTGTTGACTATCTACGATGTCGACATGGACCCTGCAGTG
GCGCGGCGCAAGGTCAACGAGCTGTTCCGCAAGAACGGGCACTTGCAGGA
CCCTGAGGTCATCAAGATCGTCGTGAGCAAGGGGTACATGGAGCTGGAGG
AGACGGTGCTGCAGTTCAAGCAACGGACGCATCTCATGCGGCTTCTC
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